FvH4_6g50530

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002313
Physical Location & Seq
Reverse (-)
37588242 .. 37589648
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50530.t1

Sequence Viewer

Length: 1407 bp
ATGGGTTCAATTTCAGACTCTCCATCCCCGCAACGCCGCCATGTTGTTCTATTCCCTTTCATGTCCAAAGGCCATACCATCCCTCTCCTCCACCTCTCCCGCCTCCTCCTCTCTCGAAACCTCGCCGTTACCGTCTTCACTACCCCCGCCAACCGCCCCTTCATCGACCAATTCCTCTCCTCCTCCACCGCCTCCGTCGTAGACCTCCCTTTCCCTCAAAACATCCACCCCGAAATCCCCTCCGGCGTCGAGAGCACTGACAAGCTCTCCTCCGTCTCCGAACGCCTCTTCTACCCCTTCACGCTCGCCACAAAACACATGCAAGATGACTTCGAGAAAGCCCTAAGCTCTCTCCCACGTGTCAGCTTCATGGTCTCCGACTCCTTCCTCTGGTGGACCCTCGACTCCGCCGTCAAGTTTAACTTCCCGCGGCTCGCCTTCTACGGCTTCAACAACTACTCCGGCTGCGTCTTCAAAACCGTCGCTGAGGATCGCCTTCTCCACGGCGCGGAGTCGGACAACGAGTTGATAACGCTGACTCGGTTTCCTTGGATCAAAATTACAAAACAGGACTTCGATTCTTCTTTCGGAAAGCATAGTCCGGAAGGATCGGAGTTTTTCATGAACGTCATGGGAGCCGTCGTTAAGAGCTTCGGCCTCGTCACTAACAGCTTCTACGAGCTCGAACCGGTCTTCGTCGACTACTGGAACACCGAGTGTACCCCCAAGTCATGGAATGTGGGACCACTCTGCCAGCTGAAACCTAAACCACAGTGCCACGATCCTAAGCCGGTCTGGATAGAATGGCTAGACAAGAAGAAGGTGGAAGGGAAGCGTGTTTTGTACGTGGCGTTCGGAACGCAAGCGGTGATCTCCTCGGAGCAAGTTGAGGAGATAGCAAAGGCGCTGGAGAAGTCGGAGCTGAATTTTCTGTGGGTGATAAGGAAGAAAGAGAGCTTCACTTGGTGGGACTCTGAGTTCGATGAAAGGGTGAGAGGGAGAGGAATGGTGGTGAGCGAGTGGGTTGATCAGACGGATATACTAAACCACGAGAGCGTGGAGGGTTTTGTGAGTCATTGTGGGTGGAACTCGGCAATGGAGGCTATTTGTGCCGGAGTGCCGATTCTCGCGTGGCCGATGATGGCGGAGCAGCCGCTTAATGCGAGGATGGTGGTGGAGGAGATAAAGGTTGGTTTGAGAGTAGAGACGTGTGACGGATCGGTTAGGGGGTTTGTGAAGGCGGAGGGGCTTGAGAAGATGGTGAAGAAGTTGATGGAGGAGGAGGAAGGGGAGGTGGTGAGGAAGAAGGTGAAGGAGTTGTCTGAGGTAGCGAGGAGGGCGGTGGAGGAGGGCGGGTCGTCGTGGCAGACGTTGCAGTCGCTCATTGATGAGGCATGCAGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

469

Amino Acids

53.08

Weight (kDa)

5.47

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 259 - 394 3.2e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 410, 1375
AccB7I CCANNNNNTGG 1 cut(s) 732
AccI GTMKAC 2 cut(s) 201, 699
AccII CGCG 3 cut(s) 430, 509, 1130
AccIII TCCGGA 1 cut(s) 601
AclWI GGATC 5 cut(s) 498, 560, 616, 776, 1225
AcoI YGGCCR 1 cut(s) 1133
AcsI RAATTY 1 cut(s) 925
AcvI CACGTG 1 cut(s) 359
AcyI GRCGYC 1 cut(s) 246
AdeI CACNNNGTG 2 cut(s) 717, 966
AfaI GTAC 2 cut(s) 721, 845
AfiI CCNNNNNNNGG 3 cut(s) 390, 508, 732
AflIII ACRYGT 2 cut(s) 358, 1208
AgeI ACCGGT 1 cut(s) 688
AgsI TTSAA 3 cut(s) 9, 451, 475
AjiI CACGTC 1 cut(s) 1209
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AloI GAACNNNNNNTCC 2 cut(s) 962, 994
AluBI AGCT 9 cut(s) 265, 348, 366, 651, 672, 682, 757, 922, 957
AluI AGCT 9 cut(s) 265, 348, 366, 651, 672, 682, 757, 922, 957
Alw21I GWGCWC 2 cut(s) 257, 684
Alw26I GTCTC 3 cut(s) 280, 379, 1199
AlwI GGATC 5 cut(s) 498, 560, 616, 776, 1225
Aor13HI TCCGGA 1 cut(s) 601
AoxI GGCC 3 cut(s) 70, 655, 1133
ApeKI GCWGC 2 cut(s) 465, 1150
ApoI RAATTY 1 cut(s) 925
ArsI GACNNNNNNTTYG 2 cut(s) 962, 994
AsiGI ACCGGT 1 cut(s) 688
AspLEI GCGC 2 cut(s) 509, 907
AspS9I GGNCC 2 cut(s) 396, 743
AsuHPI GGTGA 7 cut(s) 880, 949, 1003, 1024, 1273, 1309, 1321
AvaII GGWCC 2 cut(s) 396, 743
BanII GRGCYC 1 cut(s) 684
BauI CACGAG 1 cut(s) 1049
BbrPI CACGTG 1 cut(s) 359
BbsI GAAGAC 3 cut(s) 127, 463, 685
Bbv12I GWGCWC 2 cut(s) 257, 684
BbvCI CCTCAGC 1 cut(s) 486
BbvI GCAGC 2 cut(s) 452, 1162
BccI CCATC 6 cut(s) 31, 86, 1135, 1162, 1252, 1267
BceAI ACGGC 5 cut(s) 110, 395, 460, 520, 623
BclI TGATCA 1 cut(s) 1027
BcoDI GTCTC 3 cut(s) 280, 379, 1199
BfaI CTAG 1 cut(s) 809
BfoI RGCGCY 1 cut(s) 908
BisI GCNGC 5 cut(s) 37, 431, 466, 1151, 1154
BlsI GCNGC 5 cut(s) 38, 432, 467, 1152, 1155
Bme18I GGWCC 2 cut(s) 396, 743
BmgBI CACGTC 1 cut(s) 1209
BmgT120I GGNCC 2 cut(s) 396, 743
BmiI GGNNCC 3 cut(s) 398, 637, 744
BpiI GAAGAC 3 cut(s) 127, 463, 685
BpmI CTGGAG 1 cut(s) 929
Bpu10I CCTNAGC 3 cut(s) 344, 486, 786
BpuEI CTTGAG 1 cut(s) 1271
BsaAI YACGTR 2 cut(s) 359, 847
BsaHI GRCGYC 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 379
BsaJI CCNNGG 4 cut(s) 428, 502, 548, 876
BsaWI WCCGGW 2 cut(s) 601, 688
BsaXI ACNNNNNCTCC 8 cut(s) 251, 281, 443, 473, 627, 657, 1340, 1370
Bsc4I CCNNNNNNNGG 3 cut(s) 390, 508, 732
Bse118I RCCGGY 2 cut(s) 688, 790
Bse1I ACTGG 1 cut(s) 710
Bse3DI GCAATG 1 cut(s) 1101
BseAI TCCGGA 1 cut(s) 601
BseDI CCNNGG 4 cut(s) 428, 502, 548, 876
BseGI GGATG 4 cut(s) 23, 78, 222, 1173
BseLI CCNNNNNNNGG 3 cut(s) 390, 508, 732
BseMI GCAATG 1 cut(s) 1101
BseMII CTCAG 3 cut(s) 477, 966, 1314
BseNI ACTGG 1 cut(s) 710
BseXI GCAGC 2 cut(s) 452, 1162
Bsh1236I CGCG 3 cut(s) 430, 509, 1130
BshFI GGCC 3 cut(s) 72, 657, 1135
BshTI ACCGGT 1 cut(s) 688
BsiHKAI GWGCWC 2 cut(s) 257, 684
BsiSI CCGG 6 cut(s) 243, 462, 602, 689, 791, 1113
BslFI GGGAC 2 cut(s) 756, 983
BslI CCNNNNNNNGG 3 cut(s) 390, 508, 732
BsmAI GTCTC 3 cut(s) 280, 379, 1199
BsmBI CGTCTC 2 cut(s) 280, 1199
BsmFI GGGAC 2 cut(s) 756, 983
BsnI GGCC 3 cut(s) 72, 657, 1135
Bso31I GGTCTC 1 cut(s) 379
Bsp1286I GDGCHC 2 cut(s) 257, 684
Bsp13I TCCGGA 1 cut(s) 601
Bsp143I GATC 7 cut(s) 490, 552, 608, 781, 870, 1027, 1217
BspANI GGCC 3 cut(s) 72, 657, 1135
BspCNI CTCAG 3 cut(s) 478, 967, 1315
BspEI TCCGGA 1 cut(s) 601
BspFNI CGCG 3 cut(s) 430, 509, 1130
BspHI TCATGA 1 cut(s) 621
BspLI GGNNCC 3 cut(s) 398, 637, 744
BspPI GGATC 5 cut(s) 498, 560, 616, 776, 1225
BspTNI GGTCTC 1 cut(s) 379
BsrDI GCAATG 1 cut(s) 1101
BsrFI RCCGGY 2 cut(s) 688, 790
BsrI ACTGG 1 cut(s) 710
BssAI RCCGGY 2 cut(s) 688, 790
BssECI CCNNGG 4 cut(s) 428, 502, 548, 876
BssMI GATC 7 cut(s) 490, 552, 608, 781, 870, 1027, 1217
BssNI GRCGYC 1 cut(s) 246
BssSI CACGAG 1 cut(s) 1049
BssT1I CCWWGG 1 cut(s) 548
Bst2BI CACGAG 1 cut(s) 1049
Bst4CI ACNGT 3 cut(s) 133, 481, 774
Bst6I CTCTTC 1 cut(s) 293
BstACI GRCGYC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 1372
BstBAI YACGTR 2 cut(s) 359, 847
BstC8I GCNNGC 5 cut(s) 306, 435, 755, 864, 1396
BstDEI CTNAG 5 cut(s) 344, 486, 786, 975, 1323
BstDSI CCRYGG 2 cut(s) 428, 502
BstF5I GGATG 4 cut(s) 23, 78, 222, 1173
BstFNI CGCG 3 cut(s) 430, 509, 1130
BstH2I RGCGCY 1 cut(s) 908
BstHHI GCGC 2 cut(s) 509, 907
BstKTI GATC 7 cut(s) 493, 555, 611, 784, 873, 1030, 1220
BstMAI GTCTC 3 cut(s) 280, 379, 1199
BstMBI GATC 7 cut(s) 490, 552, 608, 781, 870, 1027, 1217
BstMWI GCNNNNNNNGC 5 cut(s) 252, 1100, 1109, 1337, 1372
BstNSI RCATGY 2 cut(s) 322, 1398
BstUI CGCG 3 cut(s) 430, 509, 1130
BstV1I GCAGC 2 cut(s) 452, 1162
BstV2I GAAGAC 3 cut(s) 127, 463, 685
BsuRI GGCC 3 cut(s) 72, 657, 1135
BtgI CCRYGG 2 cut(s) 428, 502
BtrI CACGTC 1 cut(s) 1209
BtsCI GGATG 4 cut(s) 23, 78, 222, 1173
BtsIMutI CAGTG 2 cut(s) 255, 779
Cac8I GCNNGC 5 cut(s) 306, 435, 755, 864, 1396
CciI TCATGA 1 cut(s) 621
CfoI GCGC 2 cut(s) 509, 907
Cfr10I RCCGGY 2 cut(s) 688, 790
Cfr13I GGNCC 2 cut(s) 396, 743
Cfr42I CCGCGG 1 cut(s) 431
CseI GACGC 2 cut(s) 235, 457
Csp6I GTAC 2 cut(s) 720, 844
CspAI ACCGGT 1 cut(s) 688
CviAII CATG 8 cut(s) 41, 61, 319, 370, 622, 631, 732, 1395
CviQI GTAC 2 cut(s) 720, 844
DdeI CTNAG 5 cut(s) 344, 486, 786, 975, 1323
DpnI GATC 7 cut(s) 492, 554, 610, 783, 872, 1029, 1219
DpnII GATC 7 cut(s) 490, 552, 608, 781, 870, 1027, 1217
DraIII CACNNNGTG 2 cut(s) 717, 966
DrdI GACNNNNNNGTC 2 cut(s) 410, 1375
DseDI GACNNNNNNGTC 2 cut(s) 410, 1375
EaeI YGGCCR 1 cut(s) 1133
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
EciI GGCGGA 3 cut(s) 397, 1160, 1256
Ecl136II GAGCTC 1 cut(s) 682
Eco130I CCWWGG 1 cut(s) 548
Eco24I GRGCYC 1 cut(s) 684
Eco31I GGTCTC 1 cut(s) 379
Eco47I GGWCC 2 cut(s) 396, 743
Eco53kI GAGCTC 1 cut(s) 682
Eco72I CACGTG 1 cut(s) 359
EcoICRI GAGCTC 1 cut(s) 682
EcoT14I CCWWGG 1 cut(s) 548
EcoT38I GRGCYC 1 cut(s) 684
ErhI CCWWGG 1 cut(s) 548
Esp3I CGTCTC 2 cut(s) 280, 1199
FaeI CATG 8 cut(s) 44, 64, 322, 373, 625, 634, 735, 1398
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FaqI GGGAC 2 cut(s) 756, 983
FatI CATG 8 cut(s) 40, 60, 318, 369, 621, 630, 731, 1394
FauI CCCGC 5 cut(s) 36, 107, 154, 435, 1346
FbaI TGATCA 1 cut(s) 1027
FblI GTMKAC 2 cut(s) 201, 699
Fnu4HI GCNGC 5 cut(s) 37, 431, 466, 1151, 1154
FokI GGATG 4 cut(s) 10, 65, 209, 1180
FriOI GRGCYC 1 cut(s) 684
Fsp4HI GCNGC 5 cut(s) 37, 431, 466, 1151, 1154
FspBI CTAG 1 cut(s) 809
GlaI GCGC 2 cut(s) 508, 906
GluI GCNGC 5 cut(s) 37, 431, 466, 1151, 1154
GsuI CTGGAG 1 cut(s) 929
HaeII RGCGCY 1 cut(s) 908
HaeIII GGCC 3 cut(s) 72, 657, 1135
HapII CCGG 6 cut(s) 243, 462, 602, 689, 791, 1113
HgaI GACGC 2 cut(s) 235, 457
HhaI GCGC 2 cut(s) 509, 907
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 8 cut(s) 44, 64, 322, 373, 625, 634, 735, 1398
Hin6I GCGC 2 cut(s) 507, 905
HinP1I GCGC 2 cut(s) 507, 905
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HinfI GANTC 9 cut(s) 17, 380, 404, 512, 538, 578, 971, 1072, 1123
HpaII CCGG 6 cut(s) 243, 462, 602, 689, 791, 1113
HphI GGTGA 7 cut(s) 880, 949, 1003, 1024, 1273, 1309, 1321
Hpy166II GTNNAC 4 cut(s) 202, 396, 700, 720
Hpy188III TCNNGA 6 cut(s) 114, 250, 334, 602, 622, 796
Hpy8I GTNNAC 4 cut(s) 202, 396, 700, 720
Hpy99I CGWCG 6 cut(s) 200, 251, 485, 644, 701, 1363
HpyCH4III ACNGT 3 cut(s) 133, 481, 774
HpyCH4IV ACGT 5 cut(s) 358, 627, 846, 1208, 1370
HpyCH4V TGCA 3 cut(s) 322, 1375, 1398
HpyF10VI GCNNNNNNNGC 5 cut(s) 252, 1100, 1109, 1337, 1372
HpyF3I CTNAG 5 cut(s) 344, 486, 786, 975, 1323
HpySE526I ACGT 5 cut(s) 358, 627, 846, 1208, 1370
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 8 cut(s) 44, 64, 322, 373, 625, 634, 735, 1398
HspAI GCGC 2 cut(s) 507, 905
Kpn2I TCCGGA 1 cut(s) 601
Ksp22I TGATCA 1 cut(s) 1027
KspI CCGCGG 1 cut(s) 431
Kzo9I GATC 7 cut(s) 490, 552, 608, 781, 870, 1027, 1217
LmnI GCTCC 4 cut(s) 635, 880, 919, 1147
Lsp1109I GCAGC 2 cut(s) 452, 1162
MaeI CTAG 1 cut(s) 809
MaeII ACGT 5 cut(s) 358, 627, 846, 1208, 1370
MaeIII GTNAC 3 cut(s) 127, 661, 1211
MalI GATC 7 cut(s) 492, 554, 610, 783, 872, 1029, 1219
MboI GATC 7 cut(s) 490, 552, 608, 781, 870, 1027, 1217
MhlI GDGCHC 2 cut(s) 257, 684
MluCI AATT 5 cut(s) 9, 170, 558, 925, 1402
MlyI GAGTC 7 cut(s) 11, 374, 398, 521, 532, 965, 1081
MmeI TCCRAC 3 cut(s) 402, 495, 897
MroI TCCGGA 1 cut(s) 601
MseI TTAA 4 cut(s) 420, 645, 1158, 1405
MspA1I CMGCKG 2 cut(s) 430, 757
MspI CCGG 6 cut(s) 243, 462, 602, 689, 791, 1113
MvnI CGCG 3 cut(s) 430, 509, 1130
MwoI GCNNNNNNNGC 5 cut(s) 252, 1100, 1109, 1337, 1372
NdeII GATC 7 cut(s) 490, 552, 608, 781, 870, 1027, 1217
NlaIII CATG 8 cut(s) 44, 64, 322, 373, 625, 634, 735, 1398
NlaIV GGNNCC 3 cut(s) 398, 637, 744
NmeAIII GCCGAG 1 cut(s) 1070
NmuCI GTSAC 2 cut(s) 661, 1211
NspI RCATGY 2 cut(s) 322, 1398
PaeI GCATGC 1 cut(s) 1398
PagI TCATGA 1 cut(s) 621
PcsI WCGNNNNNNNCGW 3 cut(s) 129, 408, 1367
PfeI GAWTC 2 cut(s) 578, 1123
PflMI CCANNNNNTGG 1 cut(s) 732
PinAI ACCGGT 1 cut(s) 688
PkrI GCNGC 5 cut(s) 38, 432, 467, 1152, 1155
PleI GAGTC 7 cut(s) 11, 374, 398, 520, 532, 965, 1080
PmaCI CACGTG 1 cut(s) 359
PmlI CACGTG 1 cut(s) 359
PpsI GAGTC 7 cut(s) 11, 374, 398, 520, 532, 965, 1080
Ppu21I YACGTR 2 cut(s) 359, 847
Psp124BI GAGCTC 1 cut(s) 684
PspCI CACGTG 1 cut(s) 359
PspN4I GGNNCC 3 cut(s) 398, 637, 744
PspPI GGNCC 2 cut(s) 396, 743
PsrI GAACNNNNNNTAC 2 cut(s) 836, 868
PvuII CAGCTG 1 cut(s) 757
RsaI GTAC 2 cut(s) 721, 845
RsaNI GTAC 2 cut(s) 720, 844
SacI GAGCTC 1 cut(s) 684
SacII CCGCGG 1 cut(s) 431
SalI GTCGAC 1 cut(s) 698
SaqAI TTAA 4 cut(s) 420, 645, 1158, 1405
SatI GCNGC 5 cut(s) 37, 431, 466, 1151, 1154
Sau3AI GATC 7 cut(s) 490, 552, 608, 781, 870, 1027, 1217
Sau96I GGNCC 2 cut(s) 396, 743
SchI GAGTC 7 cut(s) 11, 374, 398, 521, 532, 965, 1081
SduI GDGCHC 2 cut(s) 257, 684
Sfr303I CCGCGG 1 cut(s) 431
SgrBI CCGCGG 1 cut(s) 431
SinI GGWCC 2 cut(s) 396, 743
SmlI CTYRAG 1 cut(s) 1250
SmoI CTYRAG 1 cut(s) 1250
SphI GCATGC 1 cut(s) 1398
Sse9I AATT 5 cut(s) 9, 170, 558, 925, 1402
SspMI CTAG 1 cut(s) 809
SstI GAGCTC 1 cut(s) 684
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 3 cut(s) 133, 481, 774
TaiI ACGT 5 cut(s) 361, 630, 849, 1211, 1373
TaqI TCGA 9 cut(s) 115, 165, 249, 333, 402, 576, 684, 699, 981
TasI AATT 5 cut(s) 9, 170, 558, 925, 1402
TauI GCSGC 3 cut(s) 39, 433, 1156
TfiI GAWTC 2 cut(s) 578, 1123
Tru1I TTAA 4 cut(s) 420, 645, 1158, 1405
Tru9I TTAA 4 cut(s) 420, 645, 1158, 1405
TscAI CASTG 2 cut(s) 262, 779
TseFI GTSAC 2 cut(s) 661, 1211
TseI GCWGC 2 cut(s) 465, 1150
Tsp45I GTSAC 2 cut(s) 661, 1211
TspDTI ATGAA 6 cut(s) 49, 151, 358, 610, 638, 999
TspGWI ACGGA 4 cut(s) 184, 262, 1049, 1230
TspRI CASTG 2 cut(s) 262, 779
Van91I CCANNNNNTGG 1 cut(s) 732
VpaK11BI GGWCC 2 cut(s) 396, 743
XapI RAATTY 1 cut(s) 925
XceI RCATGY 2 cut(s) 322, 1398
XmiI GTMKAC 2 cut(s) 201, 699
XspI CTAG 1 cut(s) 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.