Rh2AG625700

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002313
Physical Location & Seq
Reverse (-)
84954539 .. 84955105
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG625700.1

Sequence Viewer

Length: 567 bp
ATGAACGTCGTGGGAGCCGTCGCTAACAGCTTCGGCCTTGTCGCAAACAGCTTCTATGAGCTCGAACCAGTCTTCGTCGACTACCTAAACACCGAGTCTTCGCCCAAGTCATGGAATGTGGGACCACTCTGCCAGCTGAAACCTAAATCAGTACTCCAAGATGACAAGCCTGTCTGGATTGAATGGCTAGACAAGAAGAAGGTTGAAGGGAGCCGTATTTTGTACGTGGCATTTGGAACTCAAGCGGTGATCTCATCGGAGCAGCTTCAAGAGATAGCAAACGCGTTGGAGAAGTCGGACGTCAACTTTCTGTGGGTGATAAGGAAGAAAGAGAGCTATACTTGGTGGGACTCGGAGTTCGAGGAGAGGGTGAGAGGGAGAGGGATGGTGGTCAGCGAGTGGGTTGACCAGACGGAGATACTCAACCACGAGAGCGTGGAGGGTTTTTTAAGTTATTGCGGGTGGAACTCGGCGATGGAGGCCATTTGCGCCAGAGTGCCGATTCTGGAGTGGCCGATGATGGCGGAGCAGCCAATGAATGCGAGGATGGTGGTGGAGGAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

188

Amino Acids

21.6

Weight (kDa)

4.69

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 73 - 185 1.7e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AatII GACGTC 1 cut(s) 303
AccB7I CCANNNNNTGG 1 cut(s) 111
AccI GTMKAC 1 cut(s) 78
AccII CGCG 1 cut(s) 284
AciI CCGC 3 cut(s) 245, 459, 524
AcoI YGGCCR 1 cut(s) 512
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 2 cut(s) 153, 224
AfiI CCNNNNNNNGG 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 3 cut(s) 182, 206, 269
AloI GAACNNNNNNTCC 2 cut(s) 341, 373
AluBI AGCT 6 cut(s) 30, 51, 61, 136, 265, 336
AluI AGCT 6 cut(s) 30, 51, 61, 136, 265, 336
Alw21I GWGCWC 1 cut(s) 63
AoxI GGCC 3 cut(s) 34, 480, 512
ApeKI GCWGC 2 cut(s) 262, 529
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
AspLEI GCGC 1 cut(s) 491
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 3 cut(s) 259, 328, 382
AvaII GGWCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 63
BauI CACGAG 1 cut(s) 428
BbsI GAAGAC 2 cut(s) 64, 90
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 274, 541
BccI CCATC 4 cut(s) 379, 469, 514, 541
BceAI ACGGC 2 cut(s) 2, 198
BfaI CTAG 1 cut(s) 188
BisI GCNGC 2 cut(s) 263, 530
BlsI GCNGC 2 cut(s) 264, 531
BmcAI AGTACT 1 cut(s) 153
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 3 cut(s) 16, 123, 212
BpiI GAAGAC 2 cut(s) 64, 90
BpmI CTGGAG 1 cut(s) 527
BpuEI CTTGAG 1 cut(s) 225
BsaAI YACGTR 1 cut(s) 226
BsaHI GRCGYC 1 cut(s) 300
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 68
BseGI GGATG 2 cut(s) 390, 552
BseLI CCNNNNNNNGG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 377
BseXI GCAGC 2 cut(s) 274, 541
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 3 cut(s) 36, 482, 514
BsiHKAI GWGCWC 1 cut(s) 63
BslFI GGGAC 2 cut(s) 135, 362
BslI CCNNNNNNNGG 1 cut(s) 111
BsmFI GGGAC 2 cut(s) 135, 362
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 3 cut(s) 36, 482, 514
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 1 cut(s) 249
BspACI CCGC 3 cut(s) 245, 459, 524
BspANI GGCC 3 cut(s) 36, 482, 514
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 3 cut(s) 16, 123, 212
BsrI ACTGG 1 cut(s) 68
BssMI GATC 1 cut(s) 249
BssNI GRCGYC 1 cut(s) 300
BssSI CACGAG 1 cut(s) 428
Bst2BI CACGAG 1 cut(s) 428
BstACI GRCGYC 1 cut(s) 300
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 134
BstF5I GGATG 2 cut(s) 390, 552
BstFNI CGCG 1 cut(s) 284
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 1 cut(s) 252
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 2 cut(s) 479, 488
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 2 cut(s) 274, 541
BstV2I GAAGAC 2 cut(s) 64, 90
BsuRI GGCC 3 cut(s) 36, 482, 514
BtgZI GCGATG 1 cut(s) 488
BtsCI GGATG 2 cut(s) 390, 552
Cac8I GCNNGC 1 cut(s) 134
CfoI GCGC 1 cut(s) 491
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 2 cut(s) 152, 223
CviAII CATG 1 cut(s) 111
CviQI GTAC 2 cut(s) 152, 223
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
EaeI YGGCCR 1 cut(s) 512
EciI GGCGGA 1 cut(s) 539
Ecl136II GAGCTC 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 122
Eco53kI GAGCTC 1 cut(s) 61
EcoICRI GAGCTC 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 63
FaeI CATG 1 cut(s) 114
FaiI YATR 3 cut(s) 57, 112, 339
FaqI GGGAC 2 cut(s) 135, 362
FatI CATG 1 cut(s) 110
FauI CCCGC 1 cut(s) 452
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 2 cut(s) 263, 530
FokI GGATG 2 cut(s) 397, 559
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 263, 530
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 490
GluI GCNGC 2 cut(s) 263, 530
GsuI CTGGAG 1 cut(s) 527
HaeIII GGCC 3 cut(s) 36, 482, 514
HhaI GCGC 1 cut(s) 491
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 1 cut(s) 114
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HincII GTYRAC 3 cut(s) 79, 304, 406
HindII GTYRAC 3 cut(s) 79, 304, 406
HinfI GANTC 3 cut(s) 95, 350, 502
HphI GGTGA 3 cut(s) 259, 328, 382
Hpy166II GTNNAC 3 cut(s) 79, 304, 406
Hpy188I TCNGA 3 cut(s) 259, 298, 355
Hpy188III TCNNGA 3 cut(s) 175, 269, 506
Hpy8I GTNNAC 3 cut(s) 79, 304, 406
Hpy99I CGWCG 3 cut(s) 11, 23, 80
HpyAV CCTTC 2 cut(s) 193, 200
HpyCH4IV ACGT 3 cut(s) 6, 225, 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 479, 488
HpySE526I ACGT 3 cut(s) 6, 225, 300
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 1 cut(s) 114
HspAI GCGC 1 cut(s) 489
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 4 cut(s) 14, 210, 259, 526
LpnPI CCDG 7 cut(s) 81, 146, 160, 183, 422, 491, 505
Lsp1109I GCAGC 2 cut(s) 274, 541
MaeI CTAG 1 cut(s) 188
MaeII ACGT 3 cut(s) 6, 225, 300
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 4 cut(s) 64, 90, 208, 337
MhlI GDGCHC 1 cut(s) 63
MluI ACGCGT 1 cut(s) 282
MlyI GAGTC 2 cut(s) 104, 344
MmeI TCCRAC 2 cut(s) 267, 276
MnlI CCTC 8 cut(s) 355, 360, 368, 374, 433, 472, 537, 550
MseI TTAA 1 cut(s) 449
MspA1I CMGCKG 1 cut(s) 136
Mva1269I GAATGC 1 cut(s) 544
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 479, 488
NdeII GATC 1 cut(s) 249
NlaIII CATG 1 cut(s) 114
NlaIV GGNNCC 3 cut(s) 16, 123, 212
NmeAIII GCCGAG 1 cut(s) 449
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PctI GAATGC 1 cut(s) 544
PfeI GAWTC 1 cut(s) 502
PflMI CCANNNNNTGG 1 cut(s) 111
PkrI GCNGC 2 cut(s) 264, 531
PleI GAGTC 2 cut(s) 103, 344
PpsI GAGTC 2 cut(s) 103, 344
Ppu21I YACGTR 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 63
PspN4I GGNNCC 3 cut(s) 16, 123, 212
PspPI GGNCC 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 136
RsaI GTAC 2 cut(s) 153, 224
RsaNI GTAC 2 cut(s) 152, 223
SacI GAGCTC 1 cut(s) 63
SalI GTCGAC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 449
SatI GCNGC 2 cut(s) 263, 530
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 1 cut(s) 122
ScaI AGTACT 1 cut(s) 153
SchI GAGTC 2 cut(s) 104, 344
SduI GDGCHC 1 cut(s) 63
SinI GGWCC 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
SsiI CCGC 3 cut(s) 245, 459, 524
SspMI CTAG 1 cut(s) 188
SstI GAGCTC 1 cut(s) 63
TaiI ACGT 3 cut(s) 9, 228, 303
TaqI TCGA 3 cut(s) 63, 78, 360
TatI WGTACW 1 cut(s) 151
TfiI GAWTC 1 cut(s) 502
Tru1I TTAA 1 cut(s) 449
Tru9I TTAA 1 cut(s) 449
TseI GCWGC 2 cut(s) 262, 529
TspDTI ATGAA 2 cut(s) 17, 551
TspGWI ACGGA 1 cut(s) 428
Van91I CCANNNNNTGG 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 78
XspI CTAG 1 cut(s) 188
ZraI GACGTC 1 cut(s) 301
ZrmI AGTACT 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.