Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000224.1

Orthogroup ID

OG0002313

Physical Location & Seq

Genomic Coordinates Forward (+)

38534 .. 38983

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000224.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgaacgtcgtgggagccgtcgctaacagcttcggccttgtcataatcagcttctctgagctcgaaccagtctttgtcgaccactggaacaccgagtcttggcccaagtcatggaatgtgggaccactctgccagctgaaacataaatcagtactccaagatgacaagtctgtctggattgaatggctaggcaagaagaaggttgaaggcagccgtgttttgtacgtggcatttggaactcaagcggtgatctcatcggagcagtttcaagagatagcaaacgcgttggagaagtcggacgtcaactttctgtgcgtgataaggaagaaagagagccatacttggtgggactcggagttcgaggagagggtgagagggagagggatggtggtcatcgagtgggttgaccagacggagatactcaacacgagagcgtggagtgttttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

149

Amino Acids

17.19

Weight (kDa)

5.41

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16890 AT2G16890 AT2G16890 AT2G16890 AT5G14860
fragaria_vesca	FvH4_6g50530
malus_domestica	MD17G1035900.v1.1 MD17G1036000.v1.1 MD17G1036100.v1.1 MD17G1036200.v1.1 MD17G1036300.v1.1 MD17G1036600.v1.1 MD17G1036700.v1.1
prunus_persica	Prupe.3G282600_v2.0.a1 Prupe.3G282700_v2.0.a1
pyrus_communis	pycom17g03290 pycom17g03300
rosa_chinensis	RchiOBHm_Chr2g0170971 RchiOBHm_Chr2g0171031
rosa_laevigata	RLG00000021996 RLG00000021998
rosa_multiflora	Rmu_sc0000224.1_g000007 Rmu_sc0004478.1_g000011 Rmu_sc0007623.1_g000006 Rmu_sc0015854.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080880
rosa_rugosa	Rorug02G0552800 Rorug02G0553200
rosa_samantha	Rh2AG625500 Rh2AG625600 Rh2AG625700 Rh2AG626700 Rh2BG636200 Rh2BG636600 Rh2CG605000 Rh2CG605100 Rh2CG605500 Rh2DG647900 Rh2DG648300
rosa_wichuraiana	Rw2G051820 Rw2G051830 Rw2G051870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AatII	GACGTC	1 cut(s)	303
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	284
AciI	CCGC	1 cut(s)	245
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	2 cut(s)	153, 224
AfiI	CCNNNNNNNGG	2 cut(s)	99, 111
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	182, 206, 269
AloI	GAACNNNNNNTCC	2 cut(s)	341, 373
AluBI	AGCT	4 cut(s)	30, 51, 61, 136
AluI	AGCT	4 cut(s)	30, 51, 61, 136
Alw21I	GWGCWC	1 cut(s)	63
AoxI	GGCC	2 cut(s)	34, 101
ApeKI	GCWGC	1 cut(s)	210
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
AspS9I	GGNCC	2 cut(s)	102, 122
AsuHPI	GGTGA	2 cut(s)	259, 382
AvaII	GGWCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	63
BauI	CACGAG	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	1 cut(s)	379
BceAI	ACGGC	2 cut(s)	2, 198
BfaI	CTAG	1 cut(s)	188
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
BmcAI	AGTACT	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	2 cut(s)	102, 122
BmiI	GGNNCC	2 cut(s)	16, 123
BpuEI	CTTGAG	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 111
Bse1I	ACTGG	2 cut(s)	68, 89
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	2 cut(s)	99, 111
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	2 cut(s)	68, 89
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	2 cut(s)	36, 103
BsiHKAI	GWGCWC	1 cut(s)	63
BslFI	GGGAC	2 cut(s)	135, 362
BslI	CCNNNNNNNGG	2 cut(s)	99, 111
BsmFI	GGGAC	2 cut(s)	135, 362
BsnI	GGCC	2 cut(s)	36, 103
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	249
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	2 cut(s)	36, 103
BspCNI	CTCAG	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	284
BspLI	GGNNCC	2 cut(s)	16, 123
BsrI	ACTGG	2 cut(s)	68, 89
BssMI	GATC	1 cut(s)	249
BssNI	GRCGYC	1 cut(s)	300
BssSI	CACGAG	1 cut(s)	427
Bst2BI	CACGAG	1 cut(s)	427
BstACI	GRCGYC	1 cut(s)	300
BstBAI	YACGTR	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	390
BstFNI	CGCG	1 cut(s)	284
BstKTI	GATC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	249
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	36, 103
BtsCI	GGATG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	134
Cfr13I	GGNCC	2 cut(s)	102, 122
Csp6I	GTAC	2 cut(s)	152, 223
CviAII	CATG	1 cut(s)	111
CviQI	GTAC	2 cut(s)	152, 223
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	63
FaeI	CATG	1 cut(s)	114
FaiI	YATR	4 cut(s)	44, 112, 144, 339
FaqI	GGGAC	2 cut(s)	135, 362
FatI	CATG	1 cut(s)	110
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	1 cut(s)	397
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	211
FspBI	CTAG	1 cut(s)	188
GluI	GCNGC	1 cut(s)	211
HaeIII	GGCC	2 cut(s)	36, 103
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	114
HincII	GTYRAC	3 cut(s)	79, 304, 406
HindII	GTYRAC	3 cut(s)	79, 304, 406
HinfI	GANTC	2 cut(s)	95, 350
HphI	GGTGA	2 cut(s)	259, 382
Hpy166II	GTNNAC	3 cut(s)	79, 304, 406
Hpy188I	TCNGA	4 cut(s)	58, 259, 298, 355
Hpy188III	TCNNGA	2 cut(s)	175, 269
Hpy8I	GTNNAC	3 cut(s)	79, 304, 406
Hpy99I	CGWCG	2 cut(s)	11, 23
HpyAV	CCTTC	2 cut(s)	193, 200
HpyCH4IV	ACGT	3 cut(s)	6, 225, 300
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	3 cut(s)	6, 225, 300
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	2 cut(s)	14, 259
LpnPI	CCDG	5 cut(s)	70, 81, 146, 160, 422
Lsp1109I	GCAGC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	188
MaeII	ACGT	3 cut(s)	6, 225, 300
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	2 cut(s)	208, 337
MhlI	GDGCHC	1 cut(s)	63
MluI	ACGCGT	1 cut(s)	282
MlyI	GAGTC	2 cut(s)	104, 344
MmeI	TCCRAC	2 cut(s)	267, 276
MnlI	CCTC	4 cut(s)	355, 360, 368, 374
MspA1I	CMGCKG	1 cut(s)	136
MvnI	CGCG	1 cut(s)	284
NdeII	GATC	1 cut(s)	249
NlaIII	CATG	1 cut(s)	114
NlaIV	GGNNCC	2 cut(s)	16, 123
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	212
PleI	GAGTC	2 cut(s)	103, 344
PpsI	GAGTC	2 cut(s)	103, 344
Ppu21I	YACGTR	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	16, 123
PspPI	GGNCC	2 cut(s)	102, 122
PvuII	CAGCTG	1 cut(s)	136
RsaI	GTAC	2 cut(s)	153, 224
RsaNI	GTAC	2 cut(s)	152, 223
SacI	GAGCTC	1 cut(s)	63
SalI	GTCGAC	1 cut(s)	77
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	2 cut(s)	102, 122
ScaI	AGTACT	1 cut(s)	153
SchI	GAGTC	2 cut(s)	104, 344
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	8 cut(s)	9, 32, 53, 63, 138, 204, 228, 303
SinI	GGWCC	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	1 cut(s)	188
SstI	GAGCTC	1 cut(s)	63
TaiI	ACGT	3 cut(s)	9, 228, 303
TaqI	TCGA	4 cut(s)	63, 78, 360, 396
TatI	WGTACW	1 cut(s)	151
TscAI	CASTG	1 cut(s)	89
TseI	GCWGC	1 cut(s)	210
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	89
Van91I	CCANNNNNTGG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	1 cut(s)	188
ZraI	GACGTC	1 cut(s)	301
ZrmI	AGTACT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.