Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002313

Physical Location & Seq

Genomic Coordinates Reverse (-)

78049972 .. 78052604

Gene Structure 2633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG605000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGTGGTCAGCGAGTGGGTTGACCAGACGGAGATACTCAACCAAGAGAGCATGGAGGGCTTTTTGAGTCATTGCGGGTGGAACTCGGCGATGGAGGCCATTTGCGCCGGAGTGCCGATTCTGGCGTGGCCAATGATGGCAGAGCAGCCGCTGAATACGAGGATGGTGGTGGAGGAGATAAAGGTTGGTTTGAGAGTAGAGACGTGCGACGGGTCGGTTAGGGGGTTTGTGAAGACGGAGAGGCTTGAGAAGATGGATGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

88

Amino Acids

9.88

Weight (kDa)

4.47

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	3 - 58	1.2e-11	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16890 AT2G16890 AT2G16890 AT2G16890 AT5G14860
fragaria_vesca	FvH4_6g50530
malus_domestica	MD17G1035900.v1.1 MD17G1036000.v1.1 MD17G1036100.v1.1 MD17G1036200.v1.1 MD17G1036300.v1.1 MD17G1036600.v1.1 MD17G1036700.v1.1
prunus_persica	Prupe.3G282600_v2.0.a1 Prupe.3G282700_v2.0.a1
pyrus_communis	pycom17g03290 pycom17g03300
rosa_chinensis	RchiOBHm_Chr2g0170971 RchiOBHm_Chr2g0171031
rosa_laevigata	RLG00000021996 RLG00000021998
rosa_multiflora	Rmu_sc0000224.1_g000007 Rmu_sc0004478.1_g000011 Rmu_sc0007623.1_g000006 Rmu_sc0015854.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080880
rosa_rugosa	Rorug02G0552800 Rorug02G0553200
rosa_samantha	Rh2AG625500 Rh2AG625600 Rh2AG625700 Rh2AG626700 Rh2BG636200 Rh2BG636600 Rh2CG605000 Rh2CG605100 Rh2CG605500 Rh2DG647900 Rh2DG648300
rosa_wichuraiana	Rw2G051820 Rw2G051830 Rw2G051870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	75, 149
AcoI	YGGCCR	1 cut(s)	128
AjiI	CACGTC	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	151
AoxI	GGCC	2 cut(s)	96, 128
ApeKI	GCWGC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	4 cut(s)	85, 130, 157, 247
BcoDI	GTCTC	1 cut(s)	194
BisI	GCNGC	2 cut(s)	146, 149
BlsI	GCNGC	2 cut(s)	147, 150
BmgBI	CACGTC	1 cut(s)	204
BmsI	GCATC	1 cut(s)	247
BpiI	GAAGAC	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	70
BseGI	GGATG	2 cut(s)	168, 262
BseMI	GCAATG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	157
BshFI	GGCC	2 cut(s)	98, 130
BsiSI	CCGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	194
BsmBI	CGTCTC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	98, 130
BspACI	CCGC	2 cut(s)	75, 149
BspANI	GGCC	2 cut(s)	98, 130
BsrDI	GCAATG	1 cut(s)	70
BstF5I	GGATG	2 cut(s)	168, 262
BstHHI	GCGC	1 cut(s)	107
BstMAI	GTCTC	1 cut(s)	194
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 95, 104
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	239
BsuRI	GGCC	2 cut(s)	98, 130
BtgZI	GCGATG	1 cut(s)	104
BtrI	CACGTC	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	168, 262
CaiI	CAGNNNCTG	1 cut(s)	151
CfoI	GCGC	1 cut(s)	107
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	5 cut(s)	60, 98, 130, 148, 244
CviKI_1	RGCY	5 cut(s)	60, 98, 130, 148, 244
EaeI	YGGCCR	1 cut(s)	128
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	1 cut(s)	55
FaiI	YATR	1 cut(s)	53
FatI	CATG	1 cut(s)	51
FauI	CCCGC	1 cut(s)	68
Fnu4HI	GCNGC	2 cut(s)	146, 149
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	2 cut(s)	146, 149
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	2 cut(s)	146, 149
HaeIII	GGCC	2 cut(s)	98, 130
HapII	CCGG	1 cut(s)	108
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	1 cut(s)	55
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	2 cut(s)	67, 118
HpaII	CCGG	1 cut(s)	108
Hpy166II	GTNNAC	1 cut(s)	22
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 95, 104
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	1 cut(s)	55
HspAI	GCGC	1 cut(s)	105
LpnPI	CCDG	3 cut(s)	38, 107, 121
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	247
MaeII	ACGT	1 cut(s)	203
MboII	GAAGA	2 cut(s)	244, 262
MlsI	TGGCCA	1 cut(s)	130
MluNI	TGGCCA	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	5 cut(s)	49, 88, 153, 166, 234
Mox20I	TGGCCA	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	130
Msp20I	TGGCCA	1 cut(s)	130
MspA1I	CMGCKG	1 cut(s)	151
MspI	CCGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	3 cut(s)	57, 95, 104
NlaIII	CATG	1 cut(s)	55
NmeAIII	GCCGAG	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	147, 150
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PstNI	CAGNNNCTG	1 cut(s)	151
SatI	GCNGC	2 cut(s)	146, 149
SchI	GAGTC	1 cut(s)	76
SetI	ASST	2 cut(s)	186, 206
SfaNI	GCATC	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SsiI	CCGC	2 cut(s)	75, 149
TaiI	ACGT	1 cut(s)	206
TauI	GCSGC	1 cut(s)	151
TfiI	GAWTC	1 cut(s)	118
TseI	GCWGC	1 cut(s)	145
TspGWI	ACGGA	2 cut(s)	44, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.