Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002313

Physical Location & Seq

Genomic Coordinates Reverse (-)

25708137 .. 25709570

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G282600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCAACTCGACTTCGAGAAGACCCTCCAGACGCTTCCACGTGTCAGCTTCTTGGTCTCCGACTCCTTCTTCTGGTGGACCGTCGACTCCGCCGCCAAGTTCGGCTTCCCCAGATTCGTCTTCTACGGTTTCGCTAACTTCCCCATGGCGGTGGGCAAAGTCGTCGCCGAGAACCGGCTCCTGGAGGGGCCCGAGTCGGACACCGAGTTAATCACGGTGACTCAGTTTCCTTGGATCAAAATTACTAAAAGGGACTTCCACGAATCTTTTAGAGACAGTAGCGCTGATGCTGCTCAACACGAAGCCTTTGAGTTCAACATGAGACGTGTGGTGGCAACCGTCCGTAGCTTCGGCATGATCGTCAACAGTTTCTATGAGCTCGAGCCAGTCTTCACCGACTACTGGAACACTGAGTGTGGCCCCAGGGCCTGGTGTGTGAAAGGACAAGATAAATTTCGTATTATATATTTCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

159

Amino Acids

18.46

Weight (kDa)

5.42

Isoelectric Point (pI)

31.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16890 AT2G16890 AT2G16890 AT2G16890 AT5G14860
fragaria_vesca	FvH4_6g50530
malus_domestica	MD17G1035900.v1.1 MD17G1036000.v1.1 MD17G1036100.v1.1 MD17G1036200.v1.1 MD17G1036300.v1.1 MD17G1036600.v1.1 MD17G1036700.v1.1
prunus_persica	Prupe.3G282600_v2.0.a1 Prupe.3G282700_v2.0.a1
pyrus_communis	pycom17g03290 pycom17g03300
rosa_chinensis	RchiOBHm_Chr2g0170971 RchiOBHm_Chr2g0171031
rosa_laevigata	RLG00000021996 RLG00000021998
rosa_multiflora	Rmu_sc0000224.1_g000007 Rmu_sc0004478.1_g000011 Rmu_sc0007623.1_g000006 Rmu_sc0015854.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080880
rosa_rugosa	Rorug02G0552800 Rorug02G0553200
rosa_samantha	Rh2AG625500 Rh2AG625600 Rh2AG625700 Rh2AG626700 Rh2BG636200 Rh2BG636600 Rh2CG605000 Rh2CG605100 Rh2CG605500 Rh2DG647900 Rh2DG648300
rosa_wichuraiana	Rw2G051820 Rw2G051830 Rw2G051870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	429
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	3 cut(s)	90, 93, 149
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	452
AcvI	CACGTG	1 cut(s)	41
AdeI	CACNNNGTG	1 cut(s)	414
AfeI	AGCGCT	1 cut(s)	283
AfiI	CCNNNNNNNGG	6 cut(s)	72, 148, 174, 181, 402, 429
AflIII	ACRYGT	2 cut(s)	40, 325
AgsI	TTSAA	1 cut(s)	316
AjiI	CACGTC	1 cut(s)	326
AjnI	CCWGG	3 cut(s)	180, 422, 428
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	3 cut(s)	48, 348, 379
AluI	AGCT	3 cut(s)	48, 348, 379
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	3 cut(s)	61, 267, 316
AlwI	GGATC	1 cut(s)	242
AlwNI	CAGNNNCTG	1 cut(s)	429
Ama87I	CYCGRG	2 cut(s)	191, 380
Aor51HI	AGCGCT	1 cut(s)	283
AoxI	GGCC	3 cut(s)	188, 418, 426
ApaI	GGGCCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	5 cut(s)	78, 188, 189, 419, 426
AsuHPI	GGTGA	2 cut(s)	229, 385
AvaI	CYCGRG	2 cut(s)	191, 380
AvaII	GGWCC	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	192
BanII	GRGCYC	2 cut(s)	192, 381
BbrPI	CACGTG	1 cut(s)	41
BbsI	GAAGAC	3 cut(s)	26, 112, 382
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	277
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	3 cut(s)	182, 424, 430
BcoDI	GTCTC	3 cut(s)	61, 267, 316
BfoI	RGCGCY	1 cut(s)	285
BisI	GCNGC	2 cut(s)	93, 291
BlsI	GCNGC	2 cut(s)	94, 292
Bme1390I	CCNGG	3 cut(s)	182, 424, 430
Bme18I	GGWCC	1 cut(s)	78
BmeT110I	CYCGRG	2 cut(s)	191, 380
BmgBI	CACGTC	1 cut(s)	326
BmgT120I	GGNCC	5 cut(s)	78, 188, 189, 419, 426
BmiI	GGNNCC	4 cut(s)	179, 189, 190, 421
BmrFI	CCNGG	3 cut(s)	182, 424, 430
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	3 cut(s)	26, 112, 382
BpmI	CTGGAG	2 cut(s)	11, 203
BsaAI	YACGTR	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	4 cut(s)	144, 230, 422, 423
Bsc4I	CCNNNNNNNGG	6 cut(s)	72, 148, 174, 181, 402, 429
Bse118I	RCCGGY	1 cut(s)	174
Bse1I	ACTGG	2 cut(s)	386, 407
BseBI	CCWGG	3 cut(s)	182, 424, 430
BseDI	CCNNGG	4 cut(s)	144, 230, 422, 423
BseLI	CCNNNNNNNGG	6 cut(s)	72, 148, 174, 181, 402, 429
BseMII	CTCAG	2 cut(s)	236, 402
BseNI	ACTGG	2 cut(s)	386, 407
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	277
BshFI	GGCC	3 cut(s)	190, 420, 428
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	2 cut(s)	191, 380
BsiSI	CCGG	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	6 cut(s)	72, 148, 174, 181, 402, 429
BsmAI	GTCTC	3 cut(s)	61, 267, 316
BsmBI	CGTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	3 cut(s)	190, 420, 428
Bso31I	GGTCTC	1 cut(s)	61
BsoBI	CYCGRG	2 cut(s)	191, 380
Bsp120I	GGGCCC	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	192, 381
Bsp143I	GATC	2 cut(s)	234, 357
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	3 cut(s)	90, 93, 149
BspANI	GGCC	3 cut(s)	190, 420, 428
BspCNI	CTCAG	2 cut(s)	235, 403
BspLI	GGNNCC	4 cut(s)	179, 189, 190, 421
BspPI	GGATC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	174
BsrI	ACTGG	2 cut(s)	386, 407
BssAI	RCCGGY	1 cut(s)	174
BssECI	CCNNGG	4 cut(s)	144, 230, 422, 423
BssMI	GATC	2 cut(s)	234, 357
BssT1I	CCWWGG	2 cut(s)	144, 230
Bst2UI	CCWGG	3 cut(s)	182, 424, 430
Bst4CI	ACNGT	6 cut(s)	82, 128, 217, 278, 340, 368
BstBAI	YACGTR	1 cut(s)	41
BstDEI	CTNAG	2 cut(s)	222, 411
BstDSI	CCRYGG	1 cut(s)	144
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	2 cut(s)	237, 360
BstMAI	GTCTC	3 cut(s)	61, 267, 316
BstMBI	GATC	2 cut(s)	234, 357
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	3 cut(s)	182, 424, 430
BstSCI	CCNGG	3 cut(s)	180, 422, 428
BstSLI	GKGCMC	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	3 cut(s)	26, 112, 382
BstXI	CCANNNNNNTGG	1 cut(s)	151
BsuRI	GGCC	3 cut(s)	190, 420, 428
BtgI	CCRYGG	1 cut(s)	144
BtrI	CACGTC	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	408
CaiI	CAGNNNCTG	1 cut(s)	429
CfoI	GCGC	1 cut(s)	284
Cfr10I	RCCGGY	1 cut(s)	174
Cfr13I	GGNCC	5 cut(s)	78, 188, 189, 419, 426
CseI	GACGC	1 cut(s)	40
CviAII	CATG	3 cut(s)	145, 319, 355
DdeI	CTNAG	2 cut(s)	222, 411
DpnI	GATC	2 cut(s)	236, 359
DpnII	GATC	2 cut(s)	234, 357
DraIII	CACNNNGTG	1 cut(s)	414
EciI	GGCGGA	1 cut(s)	79
Ecl136II	GAGCTC	1 cut(s)	379
Eco130I	CCWWGG	2 cut(s)	144, 230
Eco24I	GRGCYC	2 cut(s)	192, 381
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	78
Eco47III	AGCGCT	1 cut(s)	283
Eco53kI	GAGCTC	1 cut(s)	379
Eco72I	CACGTG	1 cut(s)	41
Eco88I	CYCGRG	2 cut(s)	191, 380
EcoICRI	GAGCTC	1 cut(s)	379
EcoO109I	RGGNCCY	2 cut(s)	188, 426
EcoRII	CCWGG	3 cut(s)	180, 422, 428
EcoT14I	CCWWGG	2 cut(s)	144, 230
EcoT38I	GRGCYC	2 cut(s)	192, 381
ErhI	CCWWGG	2 cut(s)	144, 230
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	3 cut(s)	148, 322, 358
FaiI	YATR	6 cut(s)	146, 320, 356, 375, 464, 466
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	3 cut(s)	144, 318, 354
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	93, 291
FriOI	GRGCYC	2 cut(s)	192, 381
Fsp4HI	GCNGC	2 cut(s)	93, 291
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	2 cut(s)	93, 291
GsuI	CTGGAG	2 cut(s)	11, 203
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	190, 420, 428
HapII	CCGG	1 cut(s)	175
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	3 cut(s)	148, 322, 358
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HincII	GTYRAC	2 cut(s)	85, 364
HindII	GTYRAC	2 cut(s)	85, 364
HinfI	GANTC	6 cut(s)	62, 86, 114, 194, 220, 263
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	2 cut(s)	229, 385
Hpy166II	GTNNAC	3 cut(s)	78, 85, 364
Hpy188I	TCNGA	2 cut(s)	61, 199
Hpy188III	TCNNGA	2 cut(s)	16, 28
Hpy8I	GTNNAC	3 cut(s)	78, 85, 364
Hpy99I	CGWCG	2 cut(s)	86, 167
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	6 cut(s)	82, 128, 217, 278, 340, 368
HpyCH4IV	ACGT	2 cut(s)	40, 325
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	2 cut(s)	222, 411
HpySE526I	ACGT	2 cut(s)	40, 325
Hsp92II	CATG	3 cut(s)	148, 322, 358
HspAI	GCGC	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	234, 357
LmnI	GCTCC	1 cut(s)	183
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	277
MaeII	ACGT	2 cut(s)	40, 325
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	236, 359
MboI	GATC	2 cut(s)	234, 357
MboII	GAAGA	4 cut(s)	31, 61, 112, 382
MhlI	GDGCHC	2 cut(s)	192, 381
MluCI	AATT	2 cut(s)	240, 452
MlyI	GAGTC	4 cut(s)	56, 80, 203, 214
MmeI	TCCRAC	2 cut(s)	84, 177
MnlI	CCTC	2 cut(s)	35, 178
MseI	TTAA	2 cut(s)	209, 475
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	3 cut(s)	182, 424, 430
MvaI	CCWGG	3 cut(s)	182, 424, 430
MwoI	GCNNNNNNNGC	1 cut(s)	290
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	234, 357
NlaIII	CATG	3 cut(s)	148, 322, 358
NlaIV	GGNNCC	4 cut(s)	179, 189, 190, 421
NmeAIII	GCCGAG	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	217
PaeR7I	CTCGAG	1 cut(s)	380
PasI	CCCWGGG	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	114, 263
PflMI	CCANNNNNTGG	1 cut(s)	429
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	94, 292
PleI	GAGTC	4 cut(s)	56, 80, 202, 214
PmaCI	CACGTG	1 cut(s)	41
PmlI	CACGTG	1 cut(s)	41
PpsI	GAGTC	4 cut(s)	56, 80, 202, 214
Ppu21I	YACGTR	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	381
Psp6I	CCWGG	3 cut(s)	180, 422, 428
PspCI	CACGTG	1 cut(s)	41
PspGI	CCWGG	3 cut(s)	180, 422, 428
PspN4I	GGNNCC	4 cut(s)	179, 189, 190, 421
PspOMI	GGGCCC	1 cut(s)	188
PspPI	GGNCC	5 cut(s)	78, 188, 189, 419, 426
PspXI	VCTCGAGB	1 cut(s)	380
PstNI	CAGNNNCTG	1 cut(s)	429
RseI	CAYNNNNRTG	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	381
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	209, 475
SatI	GCNGC	2 cut(s)	93, 291
Sau3AI	GATC	2 cut(s)	234, 357
Sau96I	GGNCC	5 cut(s)	78, 188, 189, 419, 426
SchI	GAGTC	4 cut(s)	56, 80, 203, 214
ScrFI	CCNGG	3 cut(s)	182, 424, 430
SduI	GDGCHC	2 cut(s)	192, 381
SetI	ASST	5 cut(s)	43, 50, 328, 350, 381
SfaNI	GCATC	1 cut(s)	277
Sfr274I	CTCGAG	1 cut(s)	380
SinI	GGWCC	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	2 cut(s)	240, 452
SsiI	CCGC	3 cut(s)	90, 93, 149
SstI	GAGCTC	1 cut(s)	381
StyD4I	CCNGG	3 cut(s)	180, 422, 428
StyI	CCWWGG	2 cut(s)	144, 230
TaaI	ACNGT	6 cut(s)	82, 128, 217, 278, 340, 368
TaiI	ACGT	2 cut(s)	43, 328
TaqI	TCGA	4 cut(s)	9, 15, 84, 381
TasI	AATT	2 cut(s)	240, 452
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	2 cut(s)	114, 263
Tru1I	TTAA	2 cut(s)	209, 475
Tru9I	TTAA	2 cut(s)	209, 475
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	217
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	415
Van91I	CCANNNNNTGG	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	1 cut(s)	452
XhoI	CTCGAG	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.