Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002313

Physical Location & Seq

Genomic Coordinates Reverse (-)

79541161 .. 79541933

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G051830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAACGTCGTGGGAGCCGTCGCTAACAGCTTCGGCCTTGTCGCAAACAGCTTCTATGAGCTCGAACCAGTCTTCGTCGACTACCTAAACACCGAGTCTTCGCCCAAGTCATGGAATGTGGGACCACTCTGCCAGCTGAAACCTAAATCAGTACTCCAAGATGACAAGCCTGTCTGGATTGAATGGCTAGACAAGAAGAAGGTTGAAGGGAGCCGTATTTTGTACGTGGCATTTGGAACTCAAGCGGTGATCTCATCGGAGCAGCTTCAAGAGATAGCAAACGCGTTGGAGAAGTCGGACGTCAACTTTCTGTGGGTGATAAGGAAGAAAGAGAGCTATACTTGGTGGGACTCGGAGTTCGAGGAGAGGGTGAGAGGGAGAGGGATGGTGGTCAGCGAGTGGGTTGACCAGACGGAGATACTCAACCACGAGAGCTTATTGCGGGTGGAACTCGGCGATGGAGGCCATTTGCGCAAGAGTGCCGATTCTGGAGTGGCCGATGATGGCGGAGCAGCCAATGAATGCGAGGATGGTGGTGGAGGAGAGATAAAGGTTGGTTTGAGAGTGGAGAAGTGCGACGGGTCTGTTAGGGGATTTGTGAAGGCGGAAGGACCTGAGAAGATGGTGAAGAAGTTGATGGAGGGGGAGGTGGTGAGGAAGAAGGGGAAGGAGGTTGGTGAGGTGGCTAGGAAGGCGGTGGAGGAGGGCGGGACGTTGGGGTCGCTCATTCATAAAGCATGCAGTAAAGAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

251

Amino Acids

27.66

Weight (kDa)

5.18

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16890 AT2G16890 AT2G16890 AT2G16890 AT5G14860
fragaria_vesca	FvH4_6g50530
malus_domestica	MD17G1035900.v1.1 MD17G1036000.v1.1 MD17G1036100.v1.1 MD17G1036200.v1.1 MD17G1036300.v1.1 MD17G1036600.v1.1 MD17G1036700.v1.1
prunus_persica	Prupe.3G282600_v2.0.a1 Prupe.3G282700_v2.0.a1
pyrus_communis	pycom17g03290 pycom17g03300
rosa_chinensis	RchiOBHm_Chr2g0170971 RchiOBHm_Chr2g0171031
rosa_laevigata	RLG00000021996 RLG00000021998
rosa_multiflora	Rmu_sc0000224.1_g000007 Rmu_sc0004478.1_g000011 Rmu_sc0007623.1_g000006 Rmu_sc0015854.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080880
rosa_rugosa	Rorug02G0552800 Rorug02G0553200
rosa_samantha	Rh2AG625500 Rh2AG625600 Rh2AG625700 Rh2AG626700 Rh2BG636200 Rh2BG636600 Rh2CG605000 Rh2CG605100 Rh2CG605500 Rh2DG647900 Rh2DG648300
rosa_wichuraiana	Rw2G051820 Rw2G051830 Rw2G051870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	170, 718
AatII	GACGTC	1 cut(s)	303
Acc16I	TGCGCA	1 cut(s)	473
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	284
AciI	CCGC	6 cut(s)	245, 442, 507, 605, 695, 708
AcoI	YGGCCR	1 cut(s)	495
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	2 cut(s)	153, 224
AfiI	CCNNNNNNNGG	1 cut(s)	111
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	182, 206, 269
AloI	GAACNNNNNNTCC	2 cut(s)	341, 373
AluBI	AGCT	7 cut(s)	30, 51, 61, 136, 265, 336, 435
AluI	AGCT	7 cut(s)	30, 51, 61, 136, 265, 336, 435
Alw21I	GWGCWC	1 cut(s)	63
AoxI	GGCC	3 cut(s)	34, 463, 495
ApeKI	GCWGC	2 cut(s)	262, 512
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
AspLEI	GCGC	1 cut(s)	474
AspS9I	GGNCC	2 cut(s)	122, 611
AsuHPI	GGTGA	6 cut(s)	259, 328, 382, 637, 664, 689
AvaII	GGWCC	2 cut(s)	122, 611
BanII	GRGCYC	1 cut(s)	63
BauI	CACGAG	1 cut(s)	428
BbsI	GAAGAC	2 cut(s)	64, 90
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	274, 524
BccI	CCATC	6 cut(s)	379, 452, 497, 524, 616, 631
BceAI	ACGGC	2 cut(s)	2, 198
BfaI	CTAG	3 cut(s)	188, 687, 754
BisI	GCNGC	2 cut(s)	263, 513
BlsI	GCNGC	2 cut(s)	264, 514
BmcAI	AGTACT	1 cut(s)	153
Bme18I	GGWCC	2 cut(s)	122, 611
BmgT120I	GGNCC	2 cut(s)	122, 611
BmiI	GGNNCC	3 cut(s)	16, 123, 212
BpiI	GAAGAC	2 cut(s)	64, 90
BpmI	CTGGAG	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	68
BseGI	GGATG	2 cut(s)	390, 535
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	3 cut(s)	377, 555, 716
BseXI	GCAGC	2 cut(s)	274, 524
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	3 cut(s)	36, 465, 497
BsiHKAI	GWGCWC	1 cut(s)	63
BslFI	GGGAC	3 cut(s)	135, 362, 724
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmFI	GGGAC	3 cut(s)	135, 362, 724
BsmI	GAATGC	1 cut(s)	527
BsnI	GGCC	3 cut(s)	36, 465, 497
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	249
BspACI	CCGC	6 cut(s)	245, 442, 507, 605, 695, 708
BspANI	GGCC	3 cut(s)	36, 465, 497
BspCNI	CTCAG	1 cut(s)	607
BspFNI	CGCG	1 cut(s)	284
BspLI	GGNNCC	3 cut(s)	16, 123, 212
BsrI	ACTGG	1 cut(s)	68
BssMI	GATC	1 cut(s)	249
BssNI	GRCGYC	1 cut(s)	300
BssSI	CACGAG	1 cut(s)	428
Bst2BI	CACGAG	1 cut(s)	428
BstACI	GRCGYC	1 cut(s)	300
BstBAI	YACGTR	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	134, 739
BstDEI	CTNAG	1 cut(s)	615
BstF5I	GGATG	2 cut(s)	390, 535
BstFNI	CGCG	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	249
BstMWI	GCNNNNNNNGC	3 cut(s)	462, 471, 692
BstNSI	RCATGY	1 cut(s)	741
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	2 cut(s)	274, 524
BstV2I	GAAGAC	2 cut(s)	64, 90
BsuRI	GGCC	3 cut(s)	36, 465, 497
BtgZI	GCGATG	1 cut(s)	471
BtsCI	GGATG	2 cut(s)	390, 535
Cac8I	GCNNGC	2 cut(s)	134, 739
CfoI	GCGC	1 cut(s)	474
Cfr13I	GGNCC	2 cut(s)	122, 611
Csp6I	GTAC	2 cut(s)	152, 223
CviAII	CATG	2 cut(s)	111, 738
CviQI	GTAC	2 cut(s)	152, 223
DdeI	CTNAG	1 cut(s)	615
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
DrdI	GACNNNNNNGTC	2 cut(s)	170, 718
DseDI	GACNNNNNNGTC	2 cut(s)	170, 718
EaeI	YGGCCR	1 cut(s)	495
EciI	GGCGGA	2 cut(s)	522, 620
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	63
Eco47I	GGWCC	2 cut(s)	122, 611
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	611
EcoT38I	GRGCYC	1 cut(s)	63
FaeI	CATG	2 cut(s)	114, 741
FaiI	YATR	5 cut(s)	57, 112, 339, 732, 739
FaqI	GGGAC	3 cut(s)	135, 362, 724
FatI	CATG	2 cut(s)	110, 737
FauI	CCCGC	2 cut(s)	435, 701
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	263, 513
FokI	GGATG	2 cut(s)	397, 542
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	263, 513
FspBI	CTAG	3 cut(s)	188, 687, 754
FspI	TGCGCA	1 cut(s)	473
GlaI	GCGC	1 cut(s)	473
GluI	GCNGC	2 cut(s)	263, 513
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	3 cut(s)	36, 465, 497
HhaI	GCGC	1 cut(s)	474
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	114, 741
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HincII	GTYRAC	3 cut(s)	79, 304, 406
HindII	GTYRAC	3 cut(s)	79, 304, 406
HinfI	GANTC	3 cut(s)	95, 350, 485
HphI	GGTGA	6 cut(s)	259, 328, 382, 637, 664, 689
Hpy166II	GTNNAC	3 cut(s)	79, 304, 406
Hpy188I	TCNGA	3 cut(s)	259, 298, 355
Hpy188III	TCNNGA	3 cut(s)	175, 269, 489
Hpy8I	GTNNAC	3 cut(s)	79, 304, 406
Hpy99I	CGWCG	4 cut(s)	11, 23, 80, 581
HpyAV	CCTTC	7 cut(s)	193, 200, 595, 602, 655, 661, 685
HpyCH4IV	ACGT	4 cut(s)	6, 225, 300, 713
HpyCH4V	TGCA	1 cut(s)	741
HpyF10VI	GCNNNNNNNGC	3 cut(s)	462, 471, 692
HpyF3I	CTNAG	1 cut(s)	615
HpySE526I	ACGT	4 cut(s)	6, 225, 300, 713
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	2 cut(s)	114, 741
HspAI	GCGC	1 cut(s)	472
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	4 cut(s)	14, 210, 259, 509
LpnPI	CCDG	7 cut(s)	81, 146, 160, 183, 422, 474, 627
Lsp1109I	GCAGC	2 cut(s)	274, 524
MaeI	CTAG	3 cut(s)	188, 687, 754
MaeII	ACGT	4 cut(s)	6, 225, 300, 713
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	7 cut(s)	64, 90, 208, 337, 631, 640, 670
MhlI	GDGCHC	1 cut(s)	63
MluI	ACGCGT	1 cut(s)	282
MlyI	GAGTC	2 cut(s)	104, 344
MmeI	TCCRAC	2 cut(s)	267, 276
MspA1I	CMGCKG	1 cut(s)	136
Mva1269I	GAATGC	1 cut(s)	527
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	462, 471, 692
NdeII	GATC	1 cut(s)	249
NlaIII	CATG	2 cut(s)	114, 741
NlaIV	GGNNCC	3 cut(s)	16, 123, 212
NmeAIII	GCCGAG	1 cut(s)	432
NsbI	TGCGCA	1 cut(s)	473
NspI	RCATGY	1 cut(s)	741
PaeI	GCATGC	1 cut(s)	741
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PctI	GAATGC	1 cut(s)	527
PfeI	GAWTC	1 cut(s)	485
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	264, 514
PleI	GAGTC	2 cut(s)	103, 344
PpsI	GAGTC	2 cut(s)	103, 344
Ppu21I	YACGTR	1 cut(s)	226
PpuMI	RGGWCCY	1 cut(s)	611
Psp124BI	GAGCTC	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	611
PspN4I	GGNNCC	3 cut(s)	16, 123, 212
PspPI	GGNCC	2 cut(s)	122, 611
PspPPI	RGGWCCY	1 cut(s)	611
PvuII	CAGCTG	1 cut(s)	136
RsaI	GTAC	2 cut(s)	153, 224
RsaNI	GTAC	2 cut(s)	152, 223
SacI	GAGCTC	1 cut(s)	63
SalI	GTCGAC	1 cut(s)	77
SatI	GCNGC	2 cut(s)	263, 513
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	2 cut(s)	122, 611
ScaI	AGTACT	1 cut(s)	153
SchI	GAGTC	2 cut(s)	104, 344
SduI	GDGCHC	1 cut(s)	63
SinI	GGWCC	2 cut(s)	122, 611
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
SphI	GCATGC	1 cut(s)	741
SsiI	CCGC	6 cut(s)	245, 442, 507, 605, 695, 708
SspMI	CTAG	3 cut(s)	188, 687, 754
SstI	GAGCTC	1 cut(s)	63
TaiI	ACGT	4 cut(s)	9, 228, 303, 716
TaqI	TCGA	3 cut(s)	63, 78, 360
TatI	WGTACW	1 cut(s)	151
TfiI	GAWTC	1 cut(s)	485
TseI	GCWGC	2 cut(s)	262, 512
TspDTI	ATGAA	3 cut(s)	17, 534, 719
TspGWI	ACGGA	1 cut(s)	428
Van91I	CCANNNNNTGG	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	122, 611
XceI	RCATGY	1 cut(s)	741
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	3 cut(s)	188, 687, 754
ZraI	GACGTC	1 cut(s)	301
ZrmI	AGTACT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.