RchiOBHm_Chr2g0171031

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002313
Physical Location & Seq
Reverse (-)
84737214 .. 84739263
2050 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53850

Sequence Viewer

Length: 1428 bp
ATGGGTTCATATTCCCCTACCAATATTCCATCAGAGCCACCGCAACGCCGCCATGTTGTTCTGTTCCCTTTCATGTCCAAAGGACACACCATCCCACTCCTCCACCTCTCCCGCCTCCTCCTCTCCCGCGGCCTCAACGTAACCGTCTTCACCACCCCGGCCAACCGCCCCTTCATCGACCAATTCCTCTACGGCACCACCGCCGCCTCCGTCGTAGACATCCCTTTCCCTCAAAACATCCACCCCGAAATCCCCGCCGGCGTCGAGAGCACCGACAAGCTCTCCTCCGTCGACGAACGCCTCTTCTACCCCTTCGCGCTCGCCACAAGACACATGCAAGCTGACTTCGAGAAAGCTCTAGGCTCTCTTCCACGTGTCAGCTTCATGGTTTCCGACTCCTTCCTCTGGTGGACGCTAGACTCTGCCACCAAGTTCGGCTTCCCGAGGCTCGCCTTCTACGGCTTCAACAACTACGCCGGCTCCGTGACCAGATTCGTAGCCCAGAATGGCCTCCTCCACGGCCCGGAGTCCGATAACGAGTTAATCACGCTGACTCGGTTTCCTTGGATCAAAATTACCAAAGAGGACTTCGGTTCTTCTTTCAGAAACCATAGTCCTGAAGGCTCGGAGTTTCTCATGAACGTCGTGGGAGCCGTCGTTAACAGCTTCGCCGTTGTCACAAACAGCTTCTATGAGCTCGAACCAGTCTTCGTCGACTGCTGGAACACCGAGTCTTCGCCCAAGTCATGGAATGTGGGACCACTCTGCCAGCTGAAACCTAAATCAGTACTCCAAGATGACAAGCCTGTCTGGATTGAATGGCTAGACAAGAAGAAGGTTGAAGGGAGCCGTGTTTTGTACGTGGCATTTGGAACTCAAGCGGTGATCTCATCGGAGCAGCTTCAAGAGATAGCAAATGCGTTGGAGAAGTCGGACGTCAACTTTCTGTGGGTGATAAGGAAGAAAGAGAGCTATACTTGGTGGGACTCGGAGTTCGAGGAGAGGGTGAGAGGGAGAGGGATGGTGGTCAGCGAGTGGGTTGACCAGACGGAGATACTCAACCACGAGAGCGTGGAGGGTTTTTTGAGTCATTGCGGGTGGAACTCGGCGATGGAGGCCATTTGCGCCGGAATGCCGATTCTGGCGTGGCCGATGATGGCGGAGCAGCCGCTGAATGCGAGGATGGTGGTGGAGGAGATAAAGGTTGGTTTGAGAGTAGAGACGTGCGACGGGTCGGTTAGGGGGTTTGTGAAGGCGGAGAGGCTTGAGAAGATGGTGAAGAAGTTGATGGAGGGGGAGGAGGGGGAGGTGGTGAGGAAGAAGGTGAAGGAGGTTGGTGAGGTGGCGAGGAAGGCTGTGGAGGAGGGCGGGTCCTCGTGGCGGACGTTGGGGTTGCTCATTGATGAGGTATGCAGTAAAGAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

475

Amino Acids

53.58

Weight (kDa)

5.49

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 285 - 398 8.3e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 806
AatII GACGTC 1 cut(s) 939
AccB1I GGYRCC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 747
AccI GTMKAC 3 cut(s) 216, 291, 714
AccII CGCG 2 cut(s) 129, 317
AclWI GGATC 1 cut(s) 575
AcoI YGGCCR 2 cut(s) 159, 1148
AcuI CTGAAG 1 cut(s) 639
AcvI CACGTG 1 cut(s) 374
AcyI GRCGYC 2 cut(s) 261, 936
AfaI GTAC 2 cut(s) 789, 860
AfiI CCNNNNNNNGG 4 cut(s) 405, 523, 747, 1380
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 4 cut(s) 466, 818, 842, 905
AjiI CACGTC 1 cut(s) 1224
AjuI GAANNNNNNNTTGG 6 cut(s) 155, 187, 422, 454, 572, 604
AloI GAACNNNNNNTCC 2 cut(s) 977, 1009
Alw21I GWGCWC 2 cut(s) 272, 699
Alw26I GTCTC 1 cut(s) 1214
AlwI GGATC 1 cut(s) 575
AlwNI CAGNNNCTG 1 cut(s) 1171
Ama87I CYCGRG 1 cut(s) 442
AoxI GGCC 6 cut(s) 130, 159, 508, 520, 1116, 1148
ApeKI GCWGC 2 cut(s) 898, 1165
ArsI GACNNNNNNTTYG 2 cut(s) 977, 1009
AspLEI GCGC 2 cut(s) 319, 1127
AspS9I GGNCC 3 cut(s) 521, 758, 1371
AsuC2I CCSGG 2 cut(s) 158, 524
AsuHPI GGTGA 8 cut(s) 142, 895, 964, 1018, 1288, 1324, 1336, 1349
AvaI CYCGRG 1 cut(s) 442
AvaII GGWCC 2 cut(s) 758, 1371
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 699
BauI CACGAG 2 cut(s) 1064, 1375
BbrPI CACGTG 1 cut(s) 374
BbsI GAAGAC 3 cut(s) 139, 700, 726
Bbv12I GWGCWC 2 cut(s) 272, 699
BbvI GCAGC 2 cut(s) 910, 1177
BccI CCATC 8 cut(s) 37, 98, 1015, 1105, 1150, 1177, 1267, 1282
BceAI ACGGC 6 cut(s) 208, 475, 535, 638, 656, 834
BcnI CCSGG 2 cut(s) 158, 524
BcoDI GTCTC 1 cut(s) 1214
BfaI CTAG 4 cut(s) 359, 416, 824, 1426
BisI GCNGC 6 cut(s) 49, 130, 204, 899, 1166, 1169
BlsI GCNGC 6 cut(s) 50, 131, 205, 900, 1167, 1170
BmcAI AGTACT 1 cut(s) 789
Bme1390I CCNGG 2 cut(s) 158, 524
Bme18I GGWCC 2 cut(s) 758, 1371
BmeT110I CYCGRG 1 cut(s) 442
BmgBI CACGTC 1 cut(s) 1224
BmgT120I GGNCC 3 cut(s) 521, 758, 1371
BmiI GGNNCC 6 cut(s) 196, 481, 652, 759, 848, 1372
BmrFI CCNGG 2 cut(s) 158, 524
BpiI GAAGAC 3 cut(s) 139, 700, 726
BpuEI CTTGAG 2 cut(s) 861, 1286
BpuMI CCSGG 2 cut(s) 158, 524
BsaAI YACGTR 2 cut(s) 374, 862
BsaHI GRCGYC 2 cut(s) 261, 936
BsaJI CCNNGG 5 cut(s) 127, 156, 443, 517, 563
BsaXI ACNNNNNCTCC 8 cut(s) 266, 296, 464, 494, 642, 672, 1355, 1385
Bsc4I CCNNNNNNNGG 4 cut(s) 405, 523, 747, 1380
Bse118I RCCGGY 2 cut(s) 257, 476
Bse1I ACTGG 1 cut(s) 704
Bse3DI GCAATG 1 cut(s) 1090
BseDI CCNNGG 5 cut(s) 127, 156, 443, 517, 563
BseGI GGATG 5 cut(s) 90, 219, 237, 1026, 1188
BseLI CCNNNNNNNGG 4 cut(s) 405, 523, 747, 1380
BseMI GCAATG 1 cut(s) 1090
BseNI ACTGG 1 cut(s) 704
BseRI GAGGAG 9 cut(s) 89, 107, 110, 274, 503, 1013, 1208, 1313, 1376
BseXI GCAGC 2 cut(s) 910, 1177
Bsh1236I CGCG 2 cut(s) 129, 317
BshFI GGCC 6 cut(s) 132, 161, 510, 522, 1118, 1150
BshNI GGYRCC 1 cut(s) 194
BsiHKAI GWGCWC 2 cut(s) 272, 699
BsiHKCI CYCGRG 1 cut(s) 442
BsiSI CCGG 5 cut(s) 158, 258, 477, 524, 1128
BslFI GGGAC 2 cut(s) 771, 998
BslI CCNNNNNNNGG 4 cut(s) 405, 523, 747, 1380
BsmAI GTCTC 1 cut(s) 1214
BsmBI CGTCTC 1 cut(s) 1214
BsmFI GGGAC 2 cut(s) 771, 998
BsmI GAATGC 2 cut(s) 1137, 1180
BsnI GGCC 6 cut(s) 132, 161, 510, 522, 1118, 1150
BsoBI CYCGRG 1 cut(s) 442
Bsp1286I GDGCHC 2 cut(s) 272, 699
Bsp143I GATC 2 cut(s) 567, 885
BspANI GGCC 6 cut(s) 132, 161, 510, 522, 1118, 1150
BspFNI CGCG 2 cut(s) 129, 317
BspHI TCATGA 1 cut(s) 636
BspLI GGNNCC 6 cut(s) 196, 481, 652, 759, 848, 1372
BspPI GGATC 1 cut(s) 575
BspT107I GGYRCC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 1090
BsrFI RCCGGY 2 cut(s) 257, 476
BsrI ACTGG 1 cut(s) 704
BssAI RCCGGY 2 cut(s) 257, 476
BssECI CCNNGG 5 cut(s) 127, 156, 443, 517, 563
BssMI GATC 2 cut(s) 567, 885
BssNI GRCGYC 2 cut(s) 261, 936
BssSI CACGAG 2 cut(s) 1064, 1375
BssT1I CCWWGG 1 cut(s) 563
Bst2BI CACGAG 2 cut(s) 1064, 1375
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 2 cut(s) 308, 372
BstACI GRCGYC 2 cut(s) 261, 936
BstBAI YACGTR 2 cut(s) 374, 862
BstC8I GCNNGC 6 cut(s) 259, 321, 339, 450, 478, 770
BstDSI CCRYGG 2 cut(s) 127, 517
BstF5I GGATG 5 cut(s) 90, 219, 237, 1026, 1188
BstFNI CGCG 2 cut(s) 129, 317
BstHHI GCGC 2 cut(s) 319, 1127
BstKTI GATC 2 cut(s) 570, 888
BstMAI GTCTC 1 cut(s) 1214
BstMBI GATC 2 cut(s) 567, 885
BstMWI GCNNNNNNNGC 4 cut(s) 267, 1115, 1124, 1352
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 2 cut(s) 156, 522
BstUI CGCG 2 cut(s) 129, 317
BstV1I GCAGC 2 cut(s) 910, 1177
BstV2I GAAGAC 3 cut(s) 139, 700, 726
BsuRI GGCC 6 cut(s) 132, 161, 510, 522, 1118, 1150
BtgI CCRYGG 2 cut(s) 127, 517
BtgZI GCGATG 1 cut(s) 1124
BtrI CACGTC 1 cut(s) 1224
BtsCI GGATG 5 cut(s) 90, 219, 237, 1026, 1188
Cac8I GCNNGC 6 cut(s) 259, 321, 339, 450, 478, 770
CaiI CAGNNNCTG 1 cut(s) 1171
CciI TCATGA 1 cut(s) 636
CfoI GCGC 2 cut(s) 319, 1127
Cfr10I RCCGGY 2 cut(s) 257, 476
Cfr13I GGNCC 3 cut(s) 521, 758, 1371
Cfr42I CCGCGG 1 cut(s) 130
CseI GACGC 2 cut(s) 250, 421
Csp6I GTAC 2 cut(s) 788, 859
CviAII CATG 6 cut(s) 53, 73, 334, 385, 637, 747
CviQI GTAC 2 cut(s) 788, 859
DpnI GATC 2 cut(s) 569, 887
DpnII GATC 2 cut(s) 567, 885
DrdI GACNNNNNNGTC 1 cut(s) 806
DseDI GACNNNNNNGTC 1 cut(s) 806
EaeI YGGCCR 2 cut(s) 159, 1148
Eam1104I CTCTTC 2 cut(s) 308, 372
EarI CTCTTC 2 cut(s) 308, 372
EciI GGCGGA 3 cut(s) 1175, 1271, 1396
Ecl136II GAGCTC 1 cut(s) 697
Eco130I CCWWGG 1 cut(s) 563
Eco24I GRGCYC 1 cut(s) 699
Eco47I GGWCC 2 cut(s) 758, 1371
Eco53kI GAGCTC 1 cut(s) 697
Eco57I CTGAAG 1 cut(s) 639
Eco72I CACGTG 1 cut(s) 374
Eco88I CYCGRG 1 cut(s) 442
EcoICRI GAGCTC 1 cut(s) 697
EcoO109I RGGNCCY 1 cut(s) 1371
EcoT14I CCWWGG 1 cut(s) 563
EcoT38I GRGCYC 1 cut(s) 699
ErhI CCWWGG 1 cut(s) 563
Esp3I CGTCTC 1 cut(s) 1214
FaeI CATG 6 cut(s) 56, 76, 337, 388, 640, 750
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FaqI GGGAC 2 cut(s) 771, 998
FatI CATG 6 cut(s) 52, 72, 333, 384, 636, 746
FauI CCCGC 5 cut(s) 119, 134, 262, 1088, 1361
FblI GTMKAC 3 cut(s) 216, 291, 714
Fnu4HI GCNGC 6 cut(s) 49, 130, 204, 899, 1166, 1169
FokI GGATG 5 cut(s) 77, 206, 224, 1033, 1195
FriOI GRGCYC 1 cut(s) 699
Fsp4HI GCNGC 6 cut(s) 49, 130, 204, 899, 1166, 1169
FspBI CTAG 4 cut(s) 359, 416, 824, 1426
GlaI GCGC 2 cut(s) 318, 1126
GluI GCNGC 6 cut(s) 49, 130, 204, 899, 1166, 1169
HaeIII GGCC 6 cut(s) 132, 161, 510, 522, 1118, 1150
HapII CCGG 5 cut(s) 158, 258, 477, 524, 1128
HgaI GACGC 2 cut(s) 250, 421
HhaI GCGC 2 cut(s) 319, 1127
Hin1I GRCGYC 2 cut(s) 261, 936
Hin1II CATG 6 cut(s) 56, 76, 337, 388, 640, 750
Hin6I GCGC 2 cut(s) 317, 1125
HinP1I GCGC 2 cut(s) 317, 1125
HincII GTYRAC 5 cut(s) 292, 661, 715, 940, 1042
HindII GTYRAC 5 cut(s) 292, 661, 715, 940, 1042
HinfI GANTC 9 cut(s) 395, 419, 492, 527, 553, 731, 986, 1087, 1138
HpaI GTTAAC 1 cut(s) 661
HpaII CCGG 5 cut(s) 158, 258, 477, 524, 1128
HphI GGTGA 8 cut(s) 142, 895, 964, 1018, 1288, 1324, 1336, 1349
Hpy166II GTNNAC 7 cut(s) 217, 292, 411, 661, 715, 940, 1042
Hpy188I TCNGA 8 cut(s) 34, 394, 532, 605, 628, 895, 934, 991
Hpy188III TCNNGA 7 cut(s) 265, 349, 442, 617, 637, 811, 905
Hpy8I GTNNAC 7 cut(s) 217, 292, 411, 661, 715, 940, 1042
Hpy99I CGWCG 8 cut(s) 215, 266, 293, 296, 647, 659, 716, 1232
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 7 cut(s) 138, 373, 642, 861, 936, 1223, 1385
HpyCH4V TGCA 2 cut(s) 337, 1413
HpyF10VI GCNNNNNNNGC 4 cut(s) 267, 1115, 1124, 1352
HpySE526I ACGT 7 cut(s) 138, 373, 642, 861, 936, 1223, 1385
Hsp92I GRCGYC 2 cut(s) 261, 936
Hsp92II CATG 6 cut(s) 56, 76, 337, 388, 640, 750
HspAI GCGC 2 cut(s) 317, 1125
KroI GCCGGC 2 cut(s) 257, 476
KroNI GCCGGC 2 cut(s) 259, 478
KspAI GTTAAC 1 cut(s) 661
KspI CCGCGG 1 cut(s) 130
Kzo9I GATC 2 cut(s) 567, 885
LmnI GCTCC 5 cut(s) 485, 650, 846, 895, 1162
Lsp1109I GCAGC 2 cut(s) 910, 1177
MaeI CTAG 4 cut(s) 359, 416, 824, 1426
MaeII ACGT 7 cut(s) 138, 373, 642, 861, 936, 1223, 1385
MaeIII GTNAC 3 cut(s) 139, 484, 676
MalI GATC 2 cut(s) 569, 887
MboI GATC 2 cut(s) 567, 885
MhlI GDGCHC 2 cut(s) 272, 699
MluCI AATT 2 cut(s) 182, 573
MlyI GAGTC 7 cut(s) 389, 413, 536, 547, 740, 980, 1096
MmeI TCCRAC 3 cut(s) 417, 903, 912
MreI CGCCGGCG 1 cut(s) 257
MroNI GCCGGC 2 cut(s) 257, 476
MseI TTAA 2 cut(s) 542, 660
MspA1I CMGCKG 3 cut(s) 129, 772, 1171
MspI CCGG 5 cut(s) 158, 258, 477, 524, 1128
MspR9I CCNGG 2 cut(s) 158, 524
Mva1269I GAATGC 2 cut(s) 1137, 1180
MvnI CGCG 2 cut(s) 129, 317
MwoI GCNNNNNNNGC 4 cut(s) 267, 1115, 1124, 1352
NaeI GCCGGC 2 cut(s) 259, 478
NciI CCSGG 2 cut(s) 158, 524
NdeII GATC 2 cut(s) 567, 885
NgoMIV GCCGGC 2 cut(s) 257, 476
NlaIII CATG 6 cut(s) 56, 76, 337, 388, 640, 750
NlaIV GGNNCC 6 cut(s) 196, 481, 652, 759, 848, 1372
NmeAIII GCCGAG 1 cut(s) 1085
NmuCI GTSAC 2 cut(s) 484, 676
NspI RCATGY 1 cut(s) 337
PagI TCATGA 1 cut(s) 636
PcsI WCGNNNNNNNCGW 4 cut(s) 270, 480, 651, 1382
PctI GAATGC 2 cut(s) 1137, 1180
PdiI GCCGGC 2 cut(s) 259, 478
PfeI GAWTC 2 cut(s) 492, 1138
PflMI CCANNNNNTGG 1 cut(s) 747
PkrI GCNGC 6 cut(s) 50, 131, 205, 900, 1167, 1170
PleI GAGTC 7 cut(s) 389, 413, 535, 547, 739, 980, 1095
PmaCI CACGTG 1 cut(s) 374
PmlI CACGTG 1 cut(s) 374
PpsI GAGTC 7 cut(s) 389, 413, 535, 547, 739, 980, 1095
Ppu21I YACGTR 2 cut(s) 374, 862
PpuMI RGGWCCY 1 cut(s) 1371
Psp124BI GAGCTC 1 cut(s) 699
Psp5II RGGWCCY 1 cut(s) 1371
PspCI CACGTG 1 cut(s) 374
PspN4I GGNNCC 6 cut(s) 196, 481, 652, 759, 848, 1372
PspPI GGNCC 3 cut(s) 521, 758, 1371
PspPPI RGGWCCY 1 cut(s) 1371
PstNI CAGNNNCTG 1 cut(s) 1171
PvuII CAGCTG 1 cut(s) 772
RsaI GTAC 2 cut(s) 789, 860
RsaNI GTAC 2 cut(s) 788, 859
SacI GAGCTC 1 cut(s) 699
SacII CCGCGG 1 cut(s) 130
SalI GTCGAC 2 cut(s) 290, 713
SaqAI TTAA 2 cut(s) 542, 660
SatI GCNGC 6 cut(s) 49, 130, 204, 899, 1166, 1169
Sau3AI GATC 2 cut(s) 567, 885
Sau96I GGNCC 3 cut(s) 521, 758, 1371
ScaI AGTACT 1 cut(s) 789
SchI GAGTC 7 cut(s) 389, 413, 536, 547, 740, 980, 1096
ScrFI CCNGG 2 cut(s) 158, 524
SduI GDGCHC 2 cut(s) 272, 699
Sfr303I CCGCGG 1 cut(s) 130
SgrAI CRCCGGYG 1 cut(s) 257
SgrBI CCGCGG 1 cut(s) 130
SgrDI CGTCGACG 1 cut(s) 290
SinI GGWCC 2 cut(s) 758, 1371
SmlI CTYRAG 2 cut(s) 876, 1265
SmoI CTYRAG 2 cut(s) 876, 1265
Sse9I AATT 2 cut(s) 182, 573
SspI AATATT 1 cut(s) 25
SspMI CTAG 4 cut(s) 359, 416, 824, 1426
SstI GAGCTC 1 cut(s) 699
StyD4I CCNGG 2 cut(s) 156, 522
StyI CCWWGG 1 cut(s) 563
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 7 cut(s) 141, 376, 645, 864, 939, 1226, 1388
TaqI TCGA 7 cut(s) 177, 264, 291, 348, 699, 714, 996
TasI AATT 2 cut(s) 182, 573
TatI WGTACW 1 cut(s) 787
TauI GCSGC 4 cut(s) 51, 132, 206, 1171
TfiI GAWTC 2 cut(s) 492, 1138
Tru1I TTAA 2 cut(s) 542, 660
Tru9I TTAA 2 cut(s) 542, 660
TseFI GTSAC 2 cut(s) 484, 676
TseI GCWGC 2 cut(s) 898, 1165
Tsp45I GTSAC 2 cut(s) 484, 676
TspDTI ATGAA 4 cut(s) 61, 163, 373, 653
TspGWI ACGGA 4 cut(s) 199, 277, 472, 1064
Van91I CCANNNNNTGG 1 cut(s) 747
VpaK11BI GGWCC 2 cut(s) 758, 1371
XceI RCATGY 1 cut(s) 337
XmiI GTMKAC 3 cut(s) 216, 291, 714
XspI CTAG 4 cut(s) 359, 416, 824, 1426
ZraI GACGTC 1 cut(s) 937
ZrmI AGTACT 1 cut(s) 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.