Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002313

Physical Location & Seq

Genomic Coordinates Reverse (-)

79807477 .. 79808574

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021996

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGCAAGCTGACTTCGAGAAAGCTCTAGGCTCTCTTCCACGTGTCAGCTTCATGGTCTCCGACTCCTTCCTCTGGTGGACGCTAGACTCTGCCACCAAGTTCGGCTTCCCGAGGCTCGCCTTCTACGGCTTCAACAACTACGCCGGCTCCGTGACCAGATTCGTCGCCCAGAATGGCCTCCTCCACGGCCCCGAGTCCGATAACGAGTTAATCACGCTGACTCGAAACCATAGTCCTGAAGGCTCGGAGTTTCTCATGAACGTCGTGGGAACCGTCGTTAACAGCTTCGCCGTTGTCACAAACAGCTTCTATGAGCTCGAACCAGTCTTCGTCGACTGCTGGAACACCGAGTCTTCGCCCAAGTCATGGAATGTGGGACCACTCTGCCAGCTGAAACCTAAATCAGTACTCCAAGATGACAAGCCTGTCTGGATTGAATGGCTAGACAAGAAGAAGGTTGAAGGGAGCCGTGTTTTGTACGTGGCATTTGGAACTCAAGCGGTGATCTCATCGGAGCAGCTTCAAGAGATAGCAAACGCGTTGGAGGAGTCGGACGTCAACTTTCTGTGGGTGATAAGGAAGAAAGAGAGCTATACTTGGTGGGACTCGGAGTTCGAGGAGAGGTCATTGCGGGTGGAACTCGGCGATGGAGGCCATTTGCGCCTGAGTGCCGATTCTGGCGTGGCCGATGATGGCGGAGCAGCCACTGAATGCCAGGATGGTGGTGGAGGAGATAAAGGTTGGTTTGAGATTGAGACGTGCGACGGGTCCGTAAGGGGATTTGTGATGGCGGAAGGACTTGAGAAGATGGTGAAGAAGTTGATGGAGGGGGAGGAGGGGGAGGTGGTGAGGAAGAAGGTGAAGGAGGTTGGTGAGGCGGCGAGGAAGGCGGTGGAGGAGGGCGGGACGTCGTGGCGGACGTTGGGGTCGCTCATTGATGAAGCATGCAGTAATAAAGAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

322

Amino Acids

35.61

Weight (kDa)

4.68

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16890 AT2G16890 AT2G16890 AT2G16890 AT5G14860
fragaria_vesca	FvH4_6g50530
malus_domestica	MD17G1035900.v1.1 MD17G1036000.v1.1 MD17G1036100.v1.1 MD17G1036200.v1.1 MD17G1036300.v1.1 MD17G1036600.v1.1 MD17G1036700.v1.1
prunus_persica	Prupe.3G282600_v2.0.a1 Prupe.3G282700_v2.0.a1
pyrus_communis	pycom17g03290 pycom17g03300
rosa_chinensis	RchiOBHm_Chr2g0170971 RchiOBHm_Chr2g0171031
rosa_laevigata	RLG00000021996 RLG00000021998
rosa_multiflora	Rmu_sc0000224.1_g000007 Rmu_sc0004478.1_g000011 Rmu_sc0007623.1_g000006 Rmu_sc0015854.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080880
rosa_rugosa	Rorug02G0552800 Rorug02G0553200
rosa_samantha	Rh2AG625500 Rh2AG625600 Rh2AG625700 Rh2AG626700 Rh2BG636200 Rh2BG636600 Rh2CG605000 Rh2CG605100 Rh2CG605500 Rh2DG647900 Rh2DG648300
rosa_wichuraiana	Rw2G051820 Rw2G051830 Rw2G051870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	425, 925
AatII	GACGTC	2 cut(s)	558, 911
AccB7I	CCANNNNNTGG	1 cut(s)	366
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	1 cut(s)	539
AciI	CCGC	8 cut(s)	500, 631, 696, 791, 878, 890, 903, 916
AcoI	YGGCCR	1 cut(s)	684
AcuI	CTGAAG	1 cut(s)	258
AcvI	CACGTG	1 cut(s)	41
AcyI	GRCGYC	2 cut(s)	555, 908
AfaI	GTAC	2 cut(s)	408, 479
AfiI	CCNNNNNNNGG	2 cut(s)	72, 366
AflIII	ACRYGT	2 cut(s)	40, 537
AgsI	TTSAA	4 cut(s)	133, 437, 461, 524
AjiI	CACGTC	1 cut(s)	759
AjnI	CCWGG	1 cut(s)	714
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AloI	GAACNNNNNNTCC	2 cut(s)	596, 628
AluBI	AGCT	9 cut(s)	8, 23, 48, 285, 306, 316, 391, 520, 591
AluI	AGCT	9 cut(s)	8, 23, 48, 285, 306, 316, 391, 520, 591
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	2 cut(s)	61, 749
AlwNI	CAGNNNCTG	1 cut(s)	707
Ama87I	CYCGRG	2 cut(s)	109, 191
AoxI	GGCC	4 cut(s)	175, 187, 652, 684
ApeKI	GCWGC	2 cut(s)	517, 701
ArsI	GACNNNNNNTTYG	4 cut(s)	217, 249, 596, 628
AspLEI	GCGC	1 cut(s)	663
AspS9I	GGNCC	3 cut(s)	188, 377, 768
AsuHPI	GGTGA	6 cut(s)	514, 583, 823, 859, 871, 884
AvaI	CYCGRG	2 cut(s)	109, 191
AvaII	GGWCC	2 cut(s)	377, 768
BanII	GRGCYC	1 cut(s)	318
BbrPI	CACGTG	1 cut(s)	41
BbsI	GAAGAC	2 cut(s)	319, 345
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	529, 713
BccI	CCATC	6 cut(s)	641, 686, 713, 781, 802, 817
BceAI	ACGGC	4 cut(s)	142, 202, 275, 453
BciT130I	CCWGG	1 cut(s)	716
BcoDI	GTCTC	2 cut(s)	61, 749
BfaI	CTAG	4 cut(s)	26, 83, 443, 964
BisI	GCNGC	3 cut(s)	518, 702, 879
BlsI	GCNGC	3 cut(s)	519, 703, 880
BmcAI	AGTACT	1 cut(s)	408
Bme1390I	CCNGG	1 cut(s)	716
Bme18I	GGWCC	2 cut(s)	377, 768
BmeT110I	CYCGRG	2 cut(s)	109, 191
BmgBI	CACGTC	1 cut(s)	759
BmgT120I	GGNCC	3 cut(s)	188, 377, 768
BmiI	GGNNCC	6 cut(s)	148, 190, 271, 378, 467, 769
BmrFI	CCNGG	1 cut(s)	716
BpiI	GAAGAC	2 cut(s)	319, 345
BpuEI	CTTGAG	2 cut(s)	480, 821
BsaAI	YACGTR	2 cut(s)	41, 481
BsaHI	GRCGYC	2 cut(s)	555, 908
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	110, 184
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 366
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	626
BseBI	CCWGG	1 cut(s)	716
BseDI	CCNNGG	2 cut(s)	110, 184
BseGI	GGATG	1 cut(s)	724
BseLI	CCNNNNNNNGG	2 cut(s)	72, 366
BseMI	GCAATG	1 cut(s)	626
BseMII	CTCAG	1 cut(s)	656
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	6 cut(s)	170, 560, 632, 744, 848, 911
BseXI	GCAGC	2 cut(s)	529, 713
Bsh1236I	CGCG	1 cut(s)	539
BshFI	GGCC	4 cut(s)	177, 189, 654, 686
BsiHKAI	GWGCWC	1 cut(s)	318
BsiHKCI	CYCGRG	2 cut(s)	109, 191
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	3 cut(s)	390, 617, 919
BslI	CCNNNNNNNGG	2 cut(s)	72, 366
BsmAI	GTCTC	2 cut(s)	61, 749
BsmBI	CGTCTC	1 cut(s)	749
BsmFI	GGGAC	3 cut(s)	390, 617, 919
BsmI	GAATGC	1 cut(s)	716
BsnI	GGCC	4 cut(s)	177, 189, 654, 686
Bso31I	GGTCTC	1 cut(s)	61
BsoBI	CYCGRG	2 cut(s)	109, 191
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	504
BspACI	CCGC	8 cut(s)	500, 631, 696, 791, 878, 890, 903, 916
BspANI	GGCC	4 cut(s)	177, 189, 654, 686
BspCNI	CTCAG	1 cut(s)	657
BspFNI	CGCG	1 cut(s)	539
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	6 cut(s)	148, 190, 271, 378, 467, 769
BspTNI	GGTCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	626
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	110, 184
BssMI	GATC	1 cut(s)	504
BssNI	GRCGYC	2 cut(s)	555, 908
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	2 cut(s)	555, 908
BstBAI	YACGTR	2 cut(s)	41, 481
BstC8I	GCNNGC	5 cut(s)	6, 117, 145, 389, 946
BstDEI	CTNAG	1 cut(s)	665
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	724
BstFNI	CGCG	1 cut(s)	539
BstHHI	GCGC	1 cut(s)	663
BstKTI	GATC	1 cut(s)	507
BstMAI	GTCTC	2 cut(s)	61, 749
BstMBI	GATC	1 cut(s)	504
BstMWI	GCNNNNNNNGC	3 cut(s)	651, 660, 887
BstNI	CCWGG	1 cut(s)	716
BstNSI	RCATGY	1 cut(s)	948
BstSCI	CCNGG	1 cut(s)	714
BstUI	CGCG	1 cut(s)	539
BstV1I	GCAGC	2 cut(s)	529, 713
BstV2I	GAAGAC	2 cut(s)	319, 345
BstXI	CCANNNNNNTGG	1 cut(s)	722
BsuRI	GGCC	4 cut(s)	177, 189, 654, 686
BtgI	CCRYGG	1 cut(s)	184
BtgZI	GCGATG	1 cut(s)	660
BtrI	CACGTC	1 cut(s)	759
BtsCI	GGATG	1 cut(s)	724
BtsIMutI	CAGTG	1 cut(s)	705
Cac8I	GCNNGC	5 cut(s)	6, 117, 145, 389, 946
CaiI	CAGNNNCTG	1 cut(s)	707
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	1 cut(s)	663
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	3 cut(s)	188, 377, 768
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	407, 478
CviAII	CATG	4 cut(s)	52, 256, 366, 945
CviQI	GTAC	2 cut(s)	407, 478
DdeI	CTNAG	1 cut(s)	665
DpnI	GATC	1 cut(s)	506
DpnII	GATC	1 cut(s)	504
DrdI	GACNNNNNNGTC	2 cut(s)	425, 925
DseDI	GACNNNNNNGTC	2 cut(s)	425, 925
EaeI	YGGCCR	1 cut(s)	684
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	3 cut(s)	711, 806, 931
Ecl136II	GAGCTC	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	377, 768
Eco53kI	GAGCTC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	258
Eco72I	CACGTG	1 cut(s)	41
Eco88I	CYCGRG	2 cut(s)	109, 191
EcoICRI	GAGCTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	714
EcoT38I	GRGCYC	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	749
FaeI	CATG	4 cut(s)	55, 259, 369, 948
FaiI	YATR	7 cut(s)	53, 231, 257, 312, 367, 594, 946
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	3 cut(s)	390, 617, 919
FatI	CATG	4 cut(s)	51, 255, 365, 944
FauI	CCCGC	2 cut(s)	624, 896
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	3 cut(s)	518, 702, 879
FokI	GGATG	1 cut(s)	731
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	3 cut(s)	518, 702, 879
FspBI	CTAG	4 cut(s)	26, 83, 443, 964
GlaI	GCGC	1 cut(s)	662
GluI	GCNGC	3 cut(s)	518, 702, 879
HaeIII	GGCC	4 cut(s)	177, 189, 654, 686
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	663
Hin1I	GRCGYC	2 cut(s)	555, 908
Hin1II	CATG	4 cut(s)	55, 259, 369, 948
Hin6I	GCGC	1 cut(s)	661
HinP1I	GCGC	1 cut(s)	661
HincII	GTYRAC	3 cut(s)	280, 334, 559
HindII	GTYRAC	3 cut(s)	280, 334, 559
HinfI	GANTC	9 cut(s)	62, 86, 159, 194, 220, 350, 548, 605, 674
HpaI	GTTAAC	1 cut(s)	280
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	6 cut(s)	514, 583, 823, 859, 871, 884
Hpy166II	GTNNAC	4 cut(s)	78, 280, 334, 559
Hpy188I	TCNGA	6 cut(s)	61, 199, 247, 514, 553, 610
Hpy188III	TCNNGA	6 cut(s)	16, 109, 236, 256, 430, 524
Hpy8I	GTNNAC	4 cut(s)	78, 280, 334, 559
Hpy99I	CGWCG	6 cut(s)	167, 266, 278, 335, 767, 913
HpyAV	CCTTC	9 cut(s)	76, 130, 233, 448, 455, 788, 850, 856, 880
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	7 cut(s)	40, 261, 480, 555, 758, 908, 920
HpyCH4V	TGCA	2 cut(s)	4, 948
HpyF10VI	GCNNNNNNNGC	3 cut(s)	651, 660, 887
HpyF3I	CTNAG	1 cut(s)	665
HpySE526I	ACGT	7 cut(s)	40, 261, 480, 555, 758, 908, 920
Hsp92I	GRCGYC	2 cut(s)	555, 908
Hsp92II	CATG	4 cut(s)	55, 259, 369, 948
HspAI	GCGC	1 cut(s)	661
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
KspAI	GTTAAC	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	504
LmnI	GCTCC	4 cut(s)	152, 465, 514, 698
Lsp1109I	GCAGC	2 cut(s)	529, 713
MaeI	CTAG	4 cut(s)	26, 83, 443, 964
MaeII	ACGT	7 cut(s)	40, 261, 480, 555, 758, 908, 920
MaeIII	GTNAC	2 cut(s)	151, 295
MalI	GATC	1 cut(s)	506
MboI	GATC	1 cut(s)	504
MboII	GAAGA	8 cut(s)	26, 319, 345, 463, 592, 817, 826, 865
MhlI	GDGCHC	1 cut(s)	318
MluI	ACGCGT	1 cut(s)	537
MlyI	GAGTC	7 cut(s)	56, 80, 203, 214, 359, 557, 599
MmeI	TCCRAC	3 cut(s)	84, 522, 531
MroNI	GCCGGC	1 cut(s)	143
MseI	TTAA	2 cut(s)	209, 279
MspA1I	CMGCKG	1 cut(s)	391
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	716
Mva1269I	GAATGC	1 cut(s)	716
MvaI	CCWGG	1 cut(s)	716
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	3 cut(s)	651, 660, 887
NaeI	GCCGGC	1 cut(s)	145
NdeII	GATC	1 cut(s)	504
NgoMIV	GCCGGC	1 cut(s)	143
NlaIII	CATG	4 cut(s)	55, 259, 369, 948
NlaIV	GGNNCC	6 cut(s)	148, 190, 271, 378, 467, 769
NmeAIII	GCCGAG	1 cut(s)	621
NmuCI	GTSAC	2 cut(s)	151, 295
NspI	RCATGY	1 cut(s)	948
PaeI	GCATGC	1 cut(s)	948
PagI	TCATGA	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	3 cut(s)	147, 270, 917
PctI	GAATGC	1 cut(s)	716
PdiI	GCCGGC	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	159, 674
PflMI	CCANNNNNTGG	1 cut(s)	366
PkrI	GCNGC	3 cut(s)	519, 703, 880
PleI	GAGTC	7 cut(s)	56, 80, 202, 214, 358, 556, 599
PmaCI	CACGTG	1 cut(s)	41
PmlI	CACGTG	1 cut(s)	41
PpsI	GAGTC	7 cut(s)	56, 80, 202, 214, 358, 556, 599
Ppu21I	YACGTR	2 cut(s)	41, 481
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	714
PspCI	CACGTG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	6 cut(s)	148, 190, 271, 378, 467, 769
PspPI	GGNCC	3 cut(s)	188, 377, 768
PstNI	CAGNNNCTG	1 cut(s)	707
PvuII	CAGCTG	1 cut(s)	391
RsaI	GTAC	2 cut(s)	408, 479
RsaNI	GTAC	2 cut(s)	407, 478
SacI	GAGCTC	1 cut(s)	318
SalI	GTCGAC	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	209, 279
SatI	GCNGC	3 cut(s)	518, 702, 879
Sau3AI	GATC	1 cut(s)	504
Sau96I	GGNCC	3 cut(s)	188, 377, 768
ScaI	AGTACT	1 cut(s)	408
SchI	GAGTC	7 cut(s)	56, 80, 203, 214, 359, 557, 599
ScrFI	CCNGG	1 cut(s)	716
SduI	GDGCHC	1 cut(s)	318
SinI	GGWCC	2 cut(s)	377, 768
SmlI	CTYRAG	2 cut(s)	495, 800
SmoI	CTYRAG	2 cut(s)	495, 800
SphI	GCATGC	1 cut(s)	948
SsiI	CCGC	8 cut(s)	500, 631, 696, 791, 878, 890, 903, 916
SspMI	CTAG	4 cut(s)	26, 83, 443, 964
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	714
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	7 cut(s)	43, 264, 483, 558, 761, 911, 923
TaqI	TCGA	5 cut(s)	15, 223, 318, 333, 615
TatI	WGTACW	1 cut(s)	406
TauI	GCSGC	1 cut(s)	881
TfiI	GAWTC	2 cut(s)	159, 674
Tru1I	TTAA	2 cut(s)	209, 279
Tru9I	TTAA	2 cut(s)	209, 279
TscAI	CASTG	1 cut(s)	712
TseFI	GTSAC	2 cut(s)	151, 295
TseI	GCWGC	2 cut(s)	517, 701
Tsp45I	GTSAC	2 cut(s)	151, 295
TspDTI	ATGAA	3 cut(s)	40, 272, 954
TspGWI	ACGGA	2 cut(s)	139, 760
TspRI	CASTG	1 cut(s)	712
Van91I	CCANNNNNTGG	1 cut(s)	366
VpaK11BI	GGWCC	2 cut(s)	377, 768
XceI	RCATGY	1 cut(s)	948
XcmI	CCANNNNNNNNNTGG	1 cut(s)	722
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	4 cut(s)	26, 83, 443, 964
ZraI	GACGTC	2 cut(s)	556, 909
ZrmI	AGTACT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.