Rroxscaffold_2G00080880

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002313
Physical Location & Seq
Forward (+)
3804626 .. 3805711
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00080880.1

Sequence Viewer

Length: 1086 bp
ATGGGTTCATATTCCCCTGCCAATATTGCATCAGAGCCACTGCAACGCCGCCATGTTGTTCTGTTCCCTTTCATGTCCAAAGGCCACACCATCCCACTCCTCCACCTCTCTCGCCTCCTCCTCTCCCGCGGCCTCAACGTAACCGTCTTCACCACCCCGGCCAACCGCCCCTTCATCGACCAATTCCTCAACGGCACCACCGCCGCCTCCGTCGTAGACATCCCTTTCCCTCAAAACATCCACCTCGAAATCCCCGCCGGCGTCGAGAGCACCGACAAGCTCTCCTCCGTCGACGAACGCCTCTTCTACCCCTTCGCGCTCGCCACAAAACACATGCAAGCTGACTTCGAGAAAGCTCTAGGCTCTCTTCCACGTGTCAGCTTCATGGTCTCCGACTCCTTCCTCTGGTGGACGCTAGACTCTGCCACCAAGTTCGGCTTCCCGAGGCTCGCCTTCTACGGCTTCAACAACTACGCCGGCTCCGTGACCAGATTCGTCGCCCAGAATGGCCTCCTCCACGGCCCCGAGTCCGATAACGAGTTAATCACGCTGACTCGGTTTCCTTGGATCAAAATTACCAAAGAGGACTTCGGTTCTTTTTTCAGAAACCATAGTCCTGAAGGCTCGGAGTTTCTCATGAACGTCGTGGGAGCCGTCGTTAACAGCTTCGCCGTTGTCACAAACAGCTTTTATGAGCTCGAACCAGTCTTCGTCGACTGCTGGAACACCGAGTCTTCGCCCAAGTCATGGAATGTGGGACCACTCTGCCAGCTGAAACCTAAATCAATACTCCAAGATGACAAGCCTGTCTGGATTGAATGGCTAGACAAGAAGGAGGTTGAAGCGAGCCGTGTTTTGTACGTGGCATTTGGAACTCAAGCGGTGATCTCATCGGAGCAGCTTCAAGAGATAGCAAACGCGTTGGAGAAGTCGGCCGTCAACTTTCTGTGGGTGATAAGGAAGAAAGAGAGCTATACTTGGTGGGACTCGGAGTTCGAGGAGAGGGTGAGAGGGAGAGGGATGGTGGTCAGCGAGTGGGTTGACCAGACGGAGATACTCAACCACGAGAGCGTGGAGGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

361

Amino Acids

40.93

Weight (kDa)

5.37

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 19 - 256 2.5e-06 Glycosyltransferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 806
AccB1I GGYRCC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 747
AccI GTMKAC 3 cut(s) 216, 291, 714
AccII CGCG 3 cut(s) 129, 317, 920
AciI CCGC 8 cut(s) 49, 127, 129, 166, 201, 204, 255, 881
AclWI GGATC 1 cut(s) 575
AcoI YGGCCR 2 cut(s) 159, 933
AcuI CTGAAG 1 cut(s) 639
AcvI CACGTG 1 cut(s) 374
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 1 cut(s) 860
AfiI CCNNNNNNNGG 2 cut(s) 405, 747
AflIII ACRYGT 2 cut(s) 373, 918
AgsI TTSAA 4 cut(s) 466, 818, 842, 905
AjuI GAANNNNNNNTTGG 6 cut(s) 155, 187, 422, 454, 572, 604
AloI GAACNNNNNNTCC 2 cut(s) 977, 1009
Alw21I GWGCWC 2 cut(s) 272, 699
Alw26I GTCTC 1 cut(s) 394
AlwI GGATC 1 cut(s) 575
Ama87I CYCGRG 2 cut(s) 442, 524
AoxI GGCC 6 cut(s) 82, 130, 159, 508, 520, 933
ApeKI GCWGC 1 cut(s) 898
ArsI GACNNNNNNTTYG 2 cut(s) 977, 1009
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 2 cut(s) 521, 758
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 4 cut(s) 142, 895, 964, 1018
AvaI CYCGRG 2 cut(s) 442, 524
AvaII GGWCC 1 cut(s) 758
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 699
BauI CACGAG 1 cut(s) 1064
BbrPI CACGTG 1 cut(s) 374
BbsI GAAGAC 3 cut(s) 139, 700, 726
Bbv12I GWGCWC 2 cut(s) 272, 699
BbvI GCAGC 1 cut(s) 910
BccI CCATC 2 cut(s) 98, 1015
BceAI ACGGC 7 cut(s) 208, 475, 535, 638, 656, 834, 920
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 394
BfaI CTAG 3 cut(s) 359, 416, 824
BisI GCNGC 4 cut(s) 49, 130, 204, 899
BlsI GCNGC 4 cut(s) 50, 131, 205, 900
Bme1390I CCNGG 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 758
BmeT110I CYCGRG 2 cut(s) 442, 524
BmgT120I GGNCC 2 cut(s) 521, 758
BmiI GGNNCC 5 cut(s) 196, 481, 523, 652, 759
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 1 cut(s) 38
BpiI GAAGAC 3 cut(s) 139, 700, 726
BpuEI CTTGAG 1 cut(s) 861
BpuMI CCSGG 1 cut(s) 158
BsaAI YACGTR 2 cut(s) 374, 862
BsaHI GRCGYC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 394
BsaJI CCNNGG 5 cut(s) 127, 156, 443, 517, 563
BsaXI ACNNNNNCTCC 6 cut(s) 266, 296, 464, 494, 642, 672
Bsc4I CCNNNNNNNGG 2 cut(s) 405, 747
Bse118I RCCGGY 2 cut(s) 257, 476
Bse1I ACTGG 1 cut(s) 704
BseDI CCNNGG 5 cut(s) 127, 156, 443, 517, 563
BseGI GGATG 4 cut(s) 90, 219, 237, 1026
BseLI CCNNNNNNNGG 2 cut(s) 405, 747
BseNI ACTGG 1 cut(s) 704
BseRI GAGGAG 6 cut(s) 89, 107, 110, 274, 503, 1013
BseX3I CGGCCG 1 cut(s) 933
BseXI GCAGC 1 cut(s) 910
Bsh1236I CGCG 3 cut(s) 129, 317, 920
Bsh1285I CGRYCG 1 cut(s) 936
BshFI GGCC 6 cut(s) 84, 132, 161, 510, 522, 935
BshNI GGYRCC 1 cut(s) 194
BsiEI CGRYCG 1 cut(s) 936
BsiHKAI GWGCWC 2 cut(s) 272, 699
BsiHKCI CYCGRG 2 cut(s) 442, 524
BsiSI CCGG 3 cut(s) 158, 258, 477
BslFI GGGAC 2 cut(s) 771, 998
BslI CCNNNNNNNGG 2 cut(s) 405, 747
BsmAI GTCTC 1 cut(s) 394
BsmFI GGGAC 2 cut(s) 771, 998
BsnI GGCC 6 cut(s) 84, 132, 161, 510, 522, 935
Bso31I GGTCTC 1 cut(s) 394
BsoBI CYCGRG 2 cut(s) 442, 524
Bsp1286I GDGCHC 2 cut(s) 272, 699
Bsp143I GATC 2 cut(s) 567, 885
BspACI CCGC 8 cut(s) 49, 127, 129, 166, 201, 204, 255, 881
BspANI GGCC 6 cut(s) 84, 132, 161, 510, 522, 935
BspFNI CGCG 3 cut(s) 129, 317, 920
BspHI TCATGA 1 cut(s) 636
BspLI GGNNCC 5 cut(s) 196, 481, 523, 652, 759
BspPI GGATC 1 cut(s) 575
BspT107I GGYRCC 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 394
BsrFI RCCGGY 2 cut(s) 257, 476
BsrI ACTGG 1 cut(s) 704
BssAI RCCGGY 2 cut(s) 257, 476
BssECI CCNNGG 5 cut(s) 127, 156, 443, 517, 563
BssMI GATC 2 cut(s) 567, 885
BssNI GRCGYC 1 cut(s) 261
BssSI CACGAG 1 cut(s) 1064
BssT1I CCWWGG 1 cut(s) 563
Bst2BI CACGAG 1 cut(s) 1064
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 2 cut(s) 308, 372
BstACI GRCGYC 1 cut(s) 261
BstBAI YACGTR 2 cut(s) 374, 862
BstC8I GCNNGC 7 cut(s) 259, 321, 339, 450, 478, 770, 847
BstDSI CCRYGG 2 cut(s) 127, 517
BstF5I GGATG 4 cut(s) 90, 219, 237, 1026
BstFNI CGCG 3 cut(s) 129, 317, 920
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 2 cut(s) 570, 888
BstMAI GTCTC 1 cut(s) 394
BstMBI GATC 2 cut(s) 567, 885
BstMCI CGRYCG 1 cut(s) 936
BstMWI GCNNNNNNNGC 2 cut(s) 26, 267
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 156
BstUI CGCG 3 cut(s) 129, 317, 920
BstV1I GCAGC 1 cut(s) 910
BstV2I GAAGAC 3 cut(s) 139, 700, 726
BstZI CGGCCG 1 cut(s) 933
BsuRI GGCC 6 cut(s) 84, 132, 161, 510, 522, 935
BtgI CCRYGG 2 cut(s) 127, 517
BtsCI GGATG 4 cut(s) 90, 219, 237, 1026
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 7 cut(s) 259, 321, 339, 450, 478, 770, 847
CciI TCATGA 1 cut(s) 636
CfoI GCGC 1 cut(s) 319
Cfr10I RCCGGY 2 cut(s) 257, 476
Cfr13I GGNCC 2 cut(s) 521, 758
Cfr42I CCGCGG 1 cut(s) 130
CseI GACGC 2 cut(s) 250, 421
Csp6I GTAC 1 cut(s) 859
CviAII CATG 6 cut(s) 53, 73, 334, 385, 637, 747
CviQI GTAC 1 cut(s) 859
DpnI GATC 2 cut(s) 569, 887
DpnII GATC 2 cut(s) 567, 885
DrdI GACNNNNNNGTC 1 cut(s) 806
DseDI GACNNNNNNGTC 1 cut(s) 806
EaeI YGGCCR 2 cut(s) 159, 933
EagI CGGCCG 1 cut(s) 933
Eam1104I CTCTTC 2 cut(s) 308, 372
EarI CTCTTC 2 cut(s) 308, 372
Ecl136II GAGCTC 1 cut(s) 697
EclXI CGGCCG 1 cut(s) 933
Eco130I CCWWGG 1 cut(s) 563
Eco24I GRGCYC 1 cut(s) 699
Eco31I GGTCTC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 758
Eco52I CGGCCG 1 cut(s) 933
Eco53kI GAGCTC 1 cut(s) 697
Eco57I CTGAAG 1 cut(s) 639
Eco72I CACGTG 1 cut(s) 374
Eco88I CYCGRG 2 cut(s) 442, 524
EcoICRI GAGCTC 1 cut(s) 697
EcoT14I CCWWGG 1 cut(s) 563
EcoT38I GRGCYC 1 cut(s) 699
ErhI CCWWGG 1 cut(s) 563
FaeI CATG 6 cut(s) 56, 76, 337, 388, 640, 750
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FaqI GGGAC 2 cut(s) 771, 998
FatI CATG 6 cut(s) 52, 72, 333, 384, 636, 746
FauI CCCGC 2 cut(s) 134, 262
FblI GTMKAC 3 cut(s) 216, 291, 714
Fnu4HI GCNGC 4 cut(s) 49, 130, 204, 899
FokI GGATG 4 cut(s) 77, 206, 224, 1033
FriOI GRGCYC 1 cut(s) 699
Fsp4HI GCNGC 4 cut(s) 49, 130, 204, 899
FspBI CTAG 3 cut(s) 359, 416, 824
GlaI GCGC 1 cut(s) 318
GluI GCNGC 4 cut(s) 49, 130, 204, 899
HaeIII GGCC 6 cut(s) 84, 132, 161, 510, 522, 935
HapII CCGG 3 cut(s) 158, 258, 477
HgaI GACGC 2 cut(s) 250, 421
HhaI GCGC 1 cut(s) 319
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 6 cut(s) 56, 76, 337, 388, 640, 750
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 5 cut(s) 292, 661, 715, 940, 1042
HindII GTYRAC 5 cut(s) 292, 661, 715, 940, 1042
HinfI GANTC 7 cut(s) 395, 419, 492, 527, 553, 731, 986
HpaI GTTAAC 1 cut(s) 661
HpaII CCGG 3 cut(s) 158, 258, 477
HphI GGTGA 4 cut(s) 142, 895, 964, 1018
Hpy166II GTNNAC 7 cut(s) 217, 292, 411, 661, 715, 940, 1042
Hpy188I TCNGA 7 cut(s) 34, 394, 532, 605, 628, 895, 991
Hpy188III TCNNGA 7 cut(s) 265, 349, 442, 617, 637, 811, 905
Hpy8I GTNNAC 7 cut(s) 217, 292, 411, 661, 715, 940, 1042
Hpy99I CGWCG 8 cut(s) 215, 266, 293, 296, 500, 647, 659, 716
HpyAV CCTTC 6 cut(s) 181, 322, 409, 463, 614, 826
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 4 cut(s) 138, 373, 642, 861
HpyCH4V TGCA 3 cut(s) 29, 43, 337
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 267
HpySE526I ACGT 4 cut(s) 138, 373, 642, 861
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 6 cut(s) 56, 76, 337, 388, 640, 750
HspAI GCGC 1 cut(s) 317
KroI GCCGGC 2 cut(s) 257, 476
KroNI GCCGGC 2 cut(s) 259, 478
KspAI GTTAAC 1 cut(s) 661
KspI CCGCGG 1 cut(s) 130
Kzo9I GATC 2 cut(s) 567, 885
LmnI GCTCC 3 cut(s) 485, 650, 895
Lsp1109I GCAGC 1 cut(s) 910
LweI GCATC 1 cut(s) 38
MaeI CTAG 3 cut(s) 359, 416, 824
MaeII ACGT 4 cut(s) 138, 373, 642, 861
MaeIII GTNAC 3 cut(s) 139, 484, 676
MalI GATC 2 cut(s) 569, 887
MboI GATC 2 cut(s) 567, 885
MboII GAAGA 6 cut(s) 139, 295, 359, 700, 726, 973
MhlI GDGCHC 2 cut(s) 272, 699
MluCI AATT 2 cut(s) 182, 573
MluI ACGCGT 1 cut(s) 918
MlyI GAGTC 6 cut(s) 389, 413, 536, 547, 740, 980
MmeI TCCRAC 2 cut(s) 417, 903
MreI CGCCGGCG 1 cut(s) 257
MroNI GCCGGC 2 cut(s) 257, 476
MseI TTAA 2 cut(s) 542, 660
MspA1I CMGCKG 2 cut(s) 129, 772
MspI CCGG 3 cut(s) 158, 258, 477
MspR9I CCNGG 1 cut(s) 158
MvnI CGCG 3 cut(s) 129, 317, 920
MwoI GCNNNNNNNGC 2 cut(s) 26, 267
NaeI GCCGGC 2 cut(s) 259, 478
NciI CCSGG 1 cut(s) 158
NdeII GATC 2 cut(s) 567, 885
NgoMIV GCCGGC 2 cut(s) 257, 476
NlaIII CATG 6 cut(s) 56, 76, 337, 388, 640, 750
NlaIV GGNNCC 5 cut(s) 196, 481, 523, 652, 759
NmuCI GTSAC 2 cut(s) 484, 676
NspI RCATGY 1 cut(s) 337
PagI TCATGA 1 cut(s) 636
PcsI WCGNNNNNNNCGW 3 cut(s) 270, 480, 651
PdiI GCCGGC 2 cut(s) 259, 478
PfeI GAWTC 1 cut(s) 492
PflMI CCANNNNNTGG 1 cut(s) 747
PkrI GCNGC 4 cut(s) 50, 131, 205, 900
PleI GAGTC 6 cut(s) 389, 413, 535, 547, 739, 980
PmaCI CACGTG 1 cut(s) 374
PmlI CACGTG 1 cut(s) 374
PpsI GAGTC 6 cut(s) 389, 413, 535, 547, 739, 980
Ppu21I YACGTR 2 cut(s) 374, 862
Psp124BI GAGCTC 1 cut(s) 699
PspCI CACGTG 1 cut(s) 374
PspN4I GGNNCC 5 cut(s) 196, 481, 523, 652, 759
PspPI GGNCC 2 cut(s) 521, 758
PvuII CAGCTG 1 cut(s) 772
RsaI GTAC 1 cut(s) 860
RsaNI GTAC 1 cut(s) 859
SacI GAGCTC 1 cut(s) 699
SacII CCGCGG 1 cut(s) 130
SalI GTCGAC 2 cut(s) 290, 713
SaqAI TTAA 2 cut(s) 542, 660
SatI GCNGC 4 cut(s) 49, 130, 204, 899
Sau3AI GATC 2 cut(s) 567, 885
Sau96I GGNCC 2 cut(s) 521, 758
SchI GAGTC 6 cut(s) 389, 413, 536, 547, 740, 980
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 2 cut(s) 272, 699
SfaNI GCATC 1 cut(s) 38
Sfr303I CCGCGG 1 cut(s) 130
SgrAI CRCCGGYG 1 cut(s) 257
SgrBI CCGCGG 1 cut(s) 130
SgrDI CGTCGACG 1 cut(s) 290
SinI GGWCC 1 cut(s) 758
SmlI CTYRAG 1 cut(s) 876
SmoI CTYRAG 1 cut(s) 876
Sse9I AATT 2 cut(s) 182, 573
SsiI CCGC 8 cut(s) 49, 127, 129, 166, 201, 204, 255, 881
SspI AATATT 1 cut(s) 25
SspMI CTAG 3 cut(s) 359, 416, 824
SstI GAGCTC 1 cut(s) 699
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 1 cut(s) 563
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 4 cut(s) 141, 376, 645, 864
TaqI TCGA 8 cut(s) 177, 246, 264, 291, 348, 699, 714, 996
TasI AATT 2 cut(s) 182, 573
TauI GCSGC 3 cut(s) 51, 132, 206
TfiI GAWTC 1 cut(s) 492
Tru1I TTAA 2 cut(s) 542, 660
Tru9I TTAA 2 cut(s) 542, 660
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 2 cut(s) 484, 676
TseI GCWGC 1 cut(s) 898
Tsp45I GTSAC 2 cut(s) 484, 676
TspDTI ATGAA 4 cut(s) 61, 163, 373, 653
TspGWI ACGGA 4 cut(s) 199, 277, 472, 1064
TspRI CASTG 1 cut(s) 45
Van91I CCANNNNNTGG 1 cut(s) 747
VpaK11BI GGWCC 1 cut(s) 758
XceI RCATGY 1 cut(s) 337
XmiI GTMKAC 3 cut(s) 216, 291, 714
XspI CTAG 3 cut(s) 359, 416, 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.