RchiOBHm_Chr2g0170971

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002313
Physical Location & Seq
Reverse (-)
84700300 .. 84701126
827 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53846

Sequence Viewer

Length: 579 bp
ATGGAAGATGAGTTTCTTGGTGATTGTATGGTCCTTCACATTGAGAAGGAATATGCTGAATCTATTGACAATGAATCGGTGATCAAAGACTTTGAAGCTTGTGGAACTCGTAGAGTTAGATTTACCCGTCCAACGTTCCAATCCTGGATCCGCCACTGGGTGATAAGGAAGAAAGAGAGCTATACTTGGTGGGACTCGGAGTTCGAGGAGAGGCTGAGAGGGAGAGGGATGGTGGTCAGCGAGTGGGTTGACCAGACGGAGATACTCAACCACGAGAGCGTGGAGTGTTTTTTAAGTCATTGCGGGTGGAACTCGGCGATGGAGGCCATTTGCGCCGGAATGCCGTTTCTGGCGTGGCCGATGATGGCGGAGCAGCCGCTGAATGCGAGGATGGTGGTGGAGGAGATAGAGGTTGGTTTGAGAGTGGAGACGTGCGACGGGTCGGTTAGTGGATTTGTGAAGGCGGAAGGACTTGAGAAGATGGTGAAGAAGTTGATGGAGGGGGAGGTGGTGAGGAAGAAGGGGAAGGAGGTTGGTGAGGTGGAGGAGGGCGGGTCGTCGTGGCGGACGTTGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

192

Amino Acids

22.14

Weight (kDa)

4.91

Isoelectric Point (pI)

53.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 76 - 136 2.6e-13 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 151, 303, 368, 377, 464, 552, 565
AclI AACGTT 1 cut(s) 134
AclWI GGATC 2 cut(s) 142, 155
AcoI YGGCCR 1 cut(s) 356
AdeI CACNNNGTG 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 1 cut(s) 95
AjiI CACGTC 1 cut(s) 432
AjnI CCWGG 1 cut(s) 143
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
AluBI AGCT 2 cut(s) 98, 180
AluI AGCT 2 cut(s) 98, 180
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 2 cut(s) 142, 155
AlwNI CAGNNNCTG 1 cut(s) 379
AoxI GGCC 2 cut(s) 324, 356
ApeKI GCWGC 1 cut(s) 373
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AspLEI GCGC 1 cut(s) 335
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 6 cut(s) 32, 91, 172, 496, 523, 548
AvaII GGWCC 1 cut(s) 31
BamHI GGATCC 1 cut(s) 147
BauI CACGAG 1 cut(s) 272
BbvI GCAGC 1 cut(s) 385
BccI CCATC 6 cut(s) 223, 313, 358, 385, 475, 490
BceAI ACGGC 1 cut(s) 328
BciT130I CCWGG 1 cut(s) 145
BclI TGATCA 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 422
BisI GCNGC 2 cut(s) 374, 377
BlsI GCNGC 2 cut(s) 375, 378
Bme1390I CCNGG 1 cut(s) 145
Bme18I GGWCC 1 cut(s) 31
BmgBI CACGTC 1 cut(s) 432
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 145
BmrI ACTGGG 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 494
BsaXI ACNNNNNCTCC 2 cut(s) 539, 569
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 161
Bse3DI GCAATG 1 cut(s) 298
BseBI CCWGG 1 cut(s) 145
BseGI GGATG 2 cut(s) 234, 396
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 3 cut(s) 221, 416, 560
BseXI GCAGC 1 cut(s) 385
BshFI GGCC 2 cut(s) 326, 358
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 1 cut(s) 422
BsmBI CGTCTC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 206
BsmI GAATGC 2 cut(s) 345, 388
BsnI GGCC 2 cut(s) 326, 358
Bsp143I GATC 2 cut(s) 81, 147
BspACI CCGC 7 cut(s) 151, 303, 368, 377, 464, 552, 565
BspANI GGCC 2 cut(s) 326, 358
BspCNI CTCAG 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 149
BspPI GGATC 2 cut(s) 142, 155
BsrDI GCAATG 1 cut(s) 298
BsrI ACTGG 1 cut(s) 161
BssMI GATC 2 cut(s) 81, 147
BssSI CACGAG 1 cut(s) 272
Bst2BI CACGAG 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 215
BstF5I GGATG 2 cut(s) 234, 396
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 2 cut(s) 84, 150
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 2 cut(s) 81, 147
BstMWI GCNNNNNNNGC 2 cut(s) 323, 332
BstNI CCWGG 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BsuRI GGCC 2 cut(s) 326, 358
BtgZI GCGATG 1 cut(s) 332
BtrI CACGTC 1 cut(s) 432
BtsCI GGATG 2 cut(s) 234, 396
BtsIMutI CAGTG 1 cut(s) 154
CaiI CAGNNNCTG 1 cut(s) 379
CfoI GCGC 1 cut(s) 335
Cfr13I GGNCC 1 cut(s) 31
CviJI RGCY 6 cut(s) 98, 180, 214, 326, 358, 376
CviKI_1 RGCY 6 cut(s) 98, 180, 214, 326, 358, 376
DdeI CTNAG 1 cut(s) 215
DpnI GATC 2 cut(s) 83, 149
DpnII GATC 2 cut(s) 81, 147
DraIII CACNNNGTG 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 356
EciI GGCGGA 3 cut(s) 140, 383, 479
Eco47I GGWCC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 143
Esp3I CGTCTC 1 cut(s) 422
FaiI YATR 3 cut(s) 29, 54, 183
FaqI GGGAC 1 cut(s) 206
FauI CCCGC 2 cut(s) 296, 545
FbaI TGATCA 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 374, 377
FokI GGATG 2 cut(s) 241, 403
Fsp4HI GCNGC 2 cut(s) 374, 377
GlaI GCGC 1 cut(s) 334
GluI GCNGC 2 cut(s) 374, 377
HaeIII GGCC 2 cut(s) 326, 358
HapII CCGG 1 cut(s) 336
HhaI GCGC 1 cut(s) 335
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 3 cut(s) 59, 74, 194
HpaII CCGG 1 cut(s) 336
HphI GGTGA 6 cut(s) 32, 91, 172, 496, 523, 548
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 199
Hpy8I GTNNAC 1 cut(s) 250
Hpy99I CGWCG 2 cut(s) 440, 562
HpyAV CCTTC 6 cut(s) 40, 44, 454, 461, 514, 520
HpyCH4IV ACGT 3 cut(s) 134, 431, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 332
HpyF3I CTNAG 1 cut(s) 215
HpySE526I ACGT 3 cut(s) 134, 431, 569
HspAI GCGC 1 cut(s) 333
Ksp22I TGATCA 1 cut(s) 81
Kzo9I GATC 2 cut(s) 81, 147
LmnI GCTCC 1 cut(s) 370
LpnPI CCDG 6 cut(s) 130, 142, 157, 266, 335, 349
Lsp1109I GCAGC 1 cut(s) 385
MaeII ACGT 3 cut(s) 134, 431, 569
MalI GATC 2 cut(s) 83, 149
MboI GATC 2 cut(s) 81, 147
MboII GAAGA 5 cut(s) 17, 181, 490, 499, 529
MflI RGATCY 1 cut(s) 147
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 155
MseI TTAA 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 379
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 145
Mva1269I GAATGC 2 cut(s) 345, 388
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 2 cut(s) 323, 332
NdeII GATC 2 cut(s) 81, 147
NlaIV GGNNCC 1 cut(s) 149
NmeAIII GCCGAG 1 cut(s) 293
PcsI WCGNNNNNNNCGW 1 cut(s) 566
PctI GAATGC 2 cut(s) 345, 388
PfeI GAWTC 2 cut(s) 59, 74
PfoI TCCNGGA 1 cut(s) 143
PkrI GCNGC 2 cut(s) 375, 378
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Psp1406I AACGTT 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 379
PsuI RGATCY 1 cut(s) 147
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 2 cut(s) 374, 377
Sau3AI GATC 2 cut(s) 81, 147
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 145
SetI ASST 9 cut(s) 100, 137, 182, 414, 434, 510, 534, 543, 572
SinI GGWCC 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
SsiI CCGC 7 cut(s) 151, 303, 368, 377, 464, 552, 565
StyD4I CCNGG 1 cut(s) 143
TaiI ACGT 3 cut(s) 137, 434, 572
TaqI TCGA 1 cut(s) 204
TauI GCSGC 1 cut(s) 379
TfiI GAWTC 2 cut(s) 59, 74
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 1 cut(s) 161
TseI GCWGC 1 cut(s) 373
TspDTI ATGAA 1 cut(s) 87
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.