Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002313

Physical Location & Seq

Genomic Coordinates Reverse (-)

84926768 .. 84927055

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG625600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCCAAAGGCCACACCATCCCACTCCTCCACCTCTCCCGTCTCCTCCTCTCCCGCGGCCTCGCCGTAACCGTCTTCACCACCCCGGCCAACCGCCCTTTCATCGACCAATTCCTCTACGGCGCCACCGCTGACTCCGTCGTGACATCCCTTTCCCTCAAAACATCCACCCCGAAATCACCGCCGGCGTCGAGAGCACCGAGAAGCTCTCCTCCGTCGATGAACGCCTCTTCTACCTCTTCGCGCTCGCCACAAAACACATGCAAGCTGATTTCGAGAAAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

95

Amino Acids

10.14

Weight (kDa)

11.64

Isoelectric Point (pI)

61.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16890 AT2G16890 AT2G16890 AT2G16890 AT5G14860
fragaria_vesca	FvH4_6g50530
malus_domestica	MD17G1035900.v1.1 MD17G1036000.v1.1 MD17G1036100.v1.1 MD17G1036200.v1.1 MD17G1036300.v1.1 MD17G1036600.v1.1 MD17G1036700.v1.1
prunus_persica	Prupe.3G282600_v2.0.a1 Prupe.3G282700_v2.0.a1
pyrus_communis	pycom17g03290 pycom17g03300
rosa_chinensis	RchiOBHm_Chr2g0170971 RchiOBHm_Chr2g0171031
rosa_laevigata	RLG00000021996 RLG00000021998
rosa_multiflora	Rmu_sc0000224.1_g000007 Rmu_sc0004478.1_g000011 Rmu_sc0007623.1_g000006 Rmu_sc0015854.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080880
rosa_rugosa	Rorug02G0552800 Rorug02G0553200
rosa_samantha	Rh2AG625500 Rh2AG625600 Rh2AG625700 Rh2AG626700 Rh2BG636200 Rh2BG636600 Rh2CG605000 Rh2CG605100 Rh2CG605500 Rh2DG647900 Rh2DG648300
rosa_wichuraiana	Rw2G051820 Rw2G051830 Rw2G051870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccII	CGCG	2 cut(s)	57, 244
AciI	CCGC	5 cut(s)	55, 57, 94, 129, 182
AcoI	YGGCCR	1 cut(s)	87
AcyI	GRCGYC	2 cut(s)	123, 188
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	3 cut(s)	207, 268, 283
AluI	AGCT	3 cut(s)	207, 268, 283
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	1 cut(s)	47
AoxI	GGCC	3 cut(s)	10, 58, 87
AspLEI	GCGC	2 cut(s)	125, 246
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	70, 171
BanI	GGYRCC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	199
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	2 cut(s)	50, 136
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	286
BfoI	RGCGCY	1 cut(s)	126
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	67
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
BpuMI	CCSGG	1 cut(s)	86
BsaHI	GRCGYC	2 cut(s)	123, 188
BsaJI	CCNNGG	2 cut(s)	55, 84
Bse118I	RCCGGY	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	55, 84
BseGI	GGATG	3 cut(s)	18, 146, 164
BseRI	GAGGAG	4 cut(s)	17, 35, 38, 201
Bsh1236I	CGCG	2 cut(s)	57, 244
BshFI	GGCC	3 cut(s)	12, 60, 89
BshNI	GGYRCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	2 cut(s)	86, 185
BsmAI	GTCTC	1 cut(s)	47
BsmBI	CGTCTC	1 cut(s)	47
BsnI	GGCC	3 cut(s)	12, 60, 89
Bsp1286I	GDGCHC	1 cut(s)	199
BspACI	CCGC	5 cut(s)	55, 57, 94, 129, 182
BspANI	GGCC	3 cut(s)	12, 60, 89
BspFNI	CGCG	2 cut(s)	57, 244
BspLI	GGNNCC	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	55, 84
BssNI	GRCGYC	2 cut(s)	123, 188
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	2 cut(s)	235, 244
BstACI	GRCGYC	2 cut(s)	123, 188
BstC8I	GCNNGC	3 cut(s)	186, 248, 266
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	3 cut(s)	18, 146, 164
BstFNI	CGCG	2 cut(s)	57, 244
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	2 cut(s)	125, 246
BstMAI	GTCTC	1 cut(s)	47
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	84
BstUI	CGCG	2 cut(s)	57, 244
BstV2I	GAAGAC	1 cut(s)	67
BsuRI	GGCC	3 cut(s)	12, 60, 89
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	3 cut(s)	18, 146, 164
Cac8I	GCNNGC	3 cut(s)	186, 248, 266
CfoI	GCGC	2 cut(s)	125, 246
Cfr10I	RCCGGY	1 cut(s)	184
Cfr42I	CCGCGG	1 cut(s)	58
CseI	GACGC	1 cut(s)	177
CviAII	CATG	1 cut(s)	261
CviJI	RGCY	6 cut(s)	12, 60, 89, 207, 268, 283
CviKI_1	RGCY	6 cut(s)	12, 60, 89, 207, 268, 283
DinI	GGCGCC	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	235, 244
EarI	CTCTTC	2 cut(s)	235, 244
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	1 cut(s)	264
FaiI	YATR	1 cut(s)	262
FatI	CATG	1 cut(s)	260
FauI	CCCGC	1 cut(s)	62
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	3 cut(s)	5, 133, 151
Fsp4HI	GCNGC	1 cut(s)	58
FspBI	CTAG	1 cut(s)	286
GlaI	GCGC	2 cut(s)	124, 245
GluI	GCNGC	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	3 cut(s)	12, 60, 89
HapII	CCGG	2 cut(s)	86, 185
HgaI	GACGC	1 cut(s)	177
HhaI	GCGC	2 cut(s)	125, 246
Hin1I	GRCGYC	2 cut(s)	123, 188
Hin1II	CATG	1 cut(s)	264
Hin6I	GCGC	2 cut(s)	123, 244
HinP1I	GCGC	2 cut(s)	123, 244
HinfI	GANTC	1 cut(s)	134
HpaII	CCGG	2 cut(s)	86, 185
HphI	GGTGA	2 cut(s)	70, 171
Hpy188III	TCNNGA	3 cut(s)	142, 192, 276
Hpy99I	CGWCG	3 cut(s)	143, 193, 220
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	1 cut(s)	264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
Hsp92I	GRCGYC	2 cut(s)	123, 188
Hsp92II	CATG	1 cut(s)	264
HspAI	GCGC	2 cut(s)	123, 244
KasI	GGCGCC	1 cut(s)	122
KroI	GCCGGC	1 cut(s)	184
KroNI	GCCGGC	1 cut(s)	186
KspI	CCGCGG	1 cut(s)	58
LpnPI	CCDG	2 cut(s)	99, 198
MaeI	CTAG	1 cut(s)	286
MaeIII	GTNAC	2 cut(s)	67, 142
MboII	GAAGA	3 cut(s)	67, 222, 231
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	1 cut(s)	110
Mly113I	GGCGCC	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	128
MreI	CGCCGGCG	1 cut(s)	184
MroNI	GCCGGC	1 cut(s)	184
MspA1I	CMGCKG	2 cut(s)	57, 131
MspI	CCGG	2 cut(s)	86, 185
MspR9I	CCNGG	1 cut(s)	86
MvnI	CGCG	2 cut(s)	57, 244
MwoI	GCNNNNNNNGC	1 cut(s)	194
NaeI	GCCGGC	1 cut(s)	186
NarI	GGCGCC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	86
NgoMIV	GCCGGC	1 cut(s)	184
NlaIII	CATG	1 cut(s)	264
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 197
PdiI	GCCGGC	1 cut(s)	186
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	128
PluTI	GGCGCC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	124
PsyI	GACNNNGTC	1 cut(s)	137
SacII	CCGCGG	1 cut(s)	58
SatI	GCNGC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	5 cut(s)	36, 209, 239, 270, 285
SfoI	GGCGCC	1 cut(s)	124
Sfr303I	CCGCGG	1 cut(s)	58
SgrAI	CRCCGGYG	1 cut(s)	184
SgrBI	CCGCGG	1 cut(s)	58
Sse9I	AATT	1 cut(s)	110
SsiI	CCGC	5 cut(s)	55, 57, 94, 129, 182
SspDI	GGCGCC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	286
StyD4I	CCNGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	4 cut(s)	105, 191, 218, 275
TasI	AATT	1 cut(s)	110
TauI	GCSGC	1 cut(s)	60
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	91, 236
TspGWI	ACGGA	2 cut(s)	127, 204
Tth111I	GACNNNGTC	1 cut(s)	137
XceI	RCATGY	1 cut(s)	264
XspI	CTAG	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.