Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002313

Physical Location & Seq

Genomic Coordinates Forward (+)

2577335 .. 2577760

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1036000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGTTCAATTTCGGAGCAGGGACACGGTGACGGCCACGTAGTTTTATTTCCCTACATGTCCAAAGGCCACACCATCTCACTCCTCCACCTTGCCCGCCGCCTTTGGGTCACCGTGTTTACCACCCCCGTCAACCGCTCGTTCATCGACCAATTCCTCACCGAAACCTCAGCCACCGTGATCTCCCTCCCTTTCCCTCAAAACATTCCCGAAATTCCTGCTGGCATCGAAAGCACCGACAAGCTACCTTTCATCGACCTCTTCCACTCTTTCGCCCTCGCCACAATCCATATGCAGTCCGACTTCGAGCGTGCCCTCACCAACCTTTCACGTATAACCTTCATGATCTCCGACGGGTTCCTCTGGTGGACCCTCGACTCCGCCGCCAAGTTCAGGTTACCAAGATTCGTCTTCTACGGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

142

Amino Acids

15.99

Weight (kDa)

6.27

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16890 AT2G16890 AT2G16890 AT2G16890 AT5G14860
fragaria_vesca	FvH4_6g50530
malus_domestica	MD17G1035900.v1.1 MD17G1036000.v1.1 MD17G1036100.v1.1 MD17G1036200.v1.1 MD17G1036300.v1.1 MD17G1036600.v1.1 MD17G1036700.v1.1
prunus_persica	Prupe.3G282600_v2.0.a1 Prupe.3G282700_v2.0.a1
pyrus_communis	pycom17g03290 pycom17g03300
rosa_chinensis	RchiOBHm_Chr2g0170971 RchiOBHm_Chr2g0171031
rosa_laevigata	RLG00000021996 RLG00000021998
rosa_multiflora	Rmu_sc0000224.1_g000007 Rmu_sc0004478.1_g000011 Rmu_sc0007623.1_g000006 Rmu_sc0015854.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080880
rosa_rugosa	Rorug02G0552800 Rorug02G0553200
rosa_samantha	Rh2AG625500 Rh2AG625600 Rh2AG625700 Rh2AG626700 Rh2BG636200 Rh2BG636600 Rh2CG605000 Rh2CG605100 Rh2CG605500 Rh2DG647900 Rh2DG648300
rosa_wichuraiana	Rw2G051820 Rw2G051830 Rw2G051870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	138
AciI	CCGC	5 cut(s)	97, 100, 136, 381, 384
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	213
AfiI	CCNNNNNNNGG	2 cut(s)	106, 393
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	9
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
AoxI	GGCC	3 cut(s)	34, 67, 418
ApoI	RAATTY	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	369
AsuHPI	GGTGA	4 cut(s)	41, 103, 151, 310
AvaII	GGWCC	1 cut(s)	369
BaeGI	GKGCMC	1 cut(s)	316
BbsI	GAAGAC	1 cut(s)	403
BbvCI	CCTCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	49
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BisI	GCNGC	2 cut(s)	100, 384
BlsI	GCNGC	2 cut(s)	101, 385
Bme18I	GGWCC	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	2 cut(s)	359, 371
BmsI	GCATC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	403
Bpu10I	CCTNAGC	1 cut(s)	169
BsaAI	YACGTR	2 cut(s)	40, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 393
BseLI	CCNNNNNNNGG	2 cut(s)	106, 393
BseMII	CTCAG	1 cut(s)	183
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	316
BshFI	GGCC	3 cut(s)	36, 69, 420
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	106, 393
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	3 cut(s)	36, 69, 420
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	2 cut(s)	180, 345
BspACI	CCGC	5 cut(s)	97, 100, 136, 381, 384
BspANI	GGCC	3 cut(s)	36, 69, 420
BspCNI	CTCAG	1 cut(s)	182
BspHI	TCATGA	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	359, 371
BsrBI	CCGCTC	1 cut(s)	138
BssMI	GATC	2 cut(s)	180, 345
Bst4CI	ACNGT	3 cut(s)	29, 115, 178
Bst6I	CTCTTC	1 cut(s)	266
BstBAI	YACGTR	2 cut(s)	40, 332
BstC8I	GCNNGC	3 cut(s)	97, 223, 312
BstDEI	CTNAG	1 cut(s)	169
BstEII	GGTNACC	2 cut(s)	109, 396
BstKTI	GATC	2 cut(s)	183, 348
BstMBI	GATC	2 cut(s)	180, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	61
BstPI	GGTNACC	2 cut(s)	109, 396
BstSLI	GKGCMC	1 cut(s)	316
BstV2I	GAAGAC	1 cut(s)	403
BsuRI	GGCC	3 cut(s)	36, 69, 420
Cac8I	GCNNGC	3 cut(s)	97, 223, 312
CciI	TCATGA	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	369
CviAII	CATG	2 cut(s)	58, 343
CviJI	RGCY	5 cut(s)	36, 69, 173, 244, 420
CviKI_1	RGCY	5 cut(s)	36, 69, 173, 244, 420
DdeI	CTNAG	1 cut(s)	169
DpnI	GATC	2 cut(s)	182, 347
DpnII	GATC	2 cut(s)	180, 345
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	369
Eco91I	GGTNACC	2 cut(s)	109, 396
EcoO65I	GGTNACC	2 cut(s)	109, 396
FaeI	CATG	2 cut(s)	61, 346
FaiI	YATR	5 cut(s)	59, 291, 293, 335, 344
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	2 cut(s)	57, 342
FauI	CCCGC	1 cut(s)	104
FauNDI	CATATG	1 cut(s)	291
Fnu4HI	GCNGC	2 cut(s)	100, 384
Fsp4HI	GCNGC	2 cut(s)	100, 384
GluI	GCNGC	2 cut(s)	100, 384
HaeIII	GGCC	3 cut(s)	36, 69, 420
Hin1II	CATG	2 cut(s)	61, 346
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	377, 405
HphI	GGTGA	4 cut(s)	41, 103, 151, 310
Hpy166II	GTNNAC	3 cut(s)	120, 133, 369
Hpy188I	TCNGA	4 cut(s)	16, 301, 352, 425
Hpy188III	TCNNGA	2 cut(s)	209, 343
Hpy8I	GTNNAC	3 cut(s)	120, 133, 369
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	3 cut(s)	29, 115, 178
HpyCH4IV	ACGT	2 cut(s)	39, 331
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	1 cut(s)	169
HpySE526I	ACGT	2 cut(s)	39, 331
Hsp92II	CATG	2 cut(s)	61, 346
Kzo9I	GATC	2 cut(s)	180, 345
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	5 cut(s)	5, 207, 231, 349, 379
LweI	GCATC	1 cut(s)	234
MaeII	ACGT	2 cut(s)	39, 331
MaeIII	GTNAC	3 cut(s)	29, 109, 396
MalI	GATC	2 cut(s)	182, 347
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	2 cut(s)	180, 345
MboII	GAAGA	2 cut(s)	253, 403
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	3 cut(s)	9, 152, 213
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	2 cut(s)	324, 375
MwoI	GCNNNNNNNGC	1 cut(s)	231
NdeI	CATATG	1 cut(s)	291
NdeII	GATC	2 cut(s)	180, 345
NlaIII	CATG	2 cut(s)	61, 346
NlaIV	GGNNCC	2 cut(s)	359, 371
NmuCI	GTSAC	2 cut(s)	29, 109
NspI	RCATGY	1 cut(s)	61
PagI	TCATGA	1 cut(s)	342
PciI	ACATGT	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	405
PkrI	GCNGC	2 cut(s)	101, 385
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
Ppu21I	YACGTR	2 cut(s)	40, 332
PscI	ACATGT	1 cut(s)	57
PspEI	GGTNACC	2 cut(s)	109, 396
PspN4I	GGNNCC	2 cut(s)	359, 371
PspPI	GGNCC	1 cut(s)	369
SatI	GCNGC	2 cut(s)	100, 384
Sau3AI	GATC	2 cut(s)	180, 345
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	316
SfaNI	GCATC	1 cut(s)	234
SinI	GGWCC	1 cut(s)	369
Sse9I	AATT	3 cut(s)	9, 152, 213
SsiI	CCGC	5 cut(s)	97, 100, 136, 381, 384
TaaI	ACNGT	3 cut(s)	29, 115, 178
TaiI	ACGT	2 cut(s)	42, 334
TaqI	TCGA	5 cut(s)	147, 228, 255, 306, 375
TasI	AATT	3 cut(s)	9, 152, 213
TauI	GCSGC	2 cut(s)	102, 386
TfiI	GAWTC	1 cut(s)	405
TseFI	GTSAC	2 cut(s)	29, 109
Tsp45I	GTSAC	2 cut(s)	29, 109
TspDTI	ATGAA	3 cut(s)	133, 241, 331
VpaK11BI	GGWCC	1 cut(s)	369
XapI	RAATTY	1 cut(s)	213
XceI	RCATGY	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.