MD17G1036100.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0002313
Physical Location & Seq
Forward (+)
2577946 .. 2580221
2276 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1036100.v1.1.491

Sequence Viewer

Length: 807 bp
ATGGCTGTCGTAGCGGCGGCTCGCAGCTACGGCATAATAGTCAACAGTTTCTACGAACTCGAGCCTGTGTTAACTGACAATTGGAACACTGAGTCTGGGCCCAAGGTCCGCCTTGTCATGGCCTCCTCCGTTAAGCCCACGTGGTTTGATTGGATGGACAAGAAGCAGGAGGAAGGAAGTAGGGTTTTGTATGTTGCATTTGGGTCACAAGCTGAGCTGTCAGCTGAACAGATCCAAGAGATAGCACTAGGGTTGGAAAACTCAATGGTCAAATTTCTGTGGGTCATAAGAAGTAAAGAGTACTCATCAGAGGCTGCCTCGTGGGACATTGAAGGGTTTCAGGAGAGAGTAACGGAGAGGGAAATGGTGGTCAAAGAGAGGGTTGACCAGAAGCGGGTTTTATTGCATGAGTGTGTGCAAGGTTTTGTAAGCCACTGCGGATGGAACTCGGTGATGGAGAGCATATGCGCCGGAGTGCCGATTCTGGCGTGGTCAATGATGGCGGATCAACAGCTGAATGCAAAGTTCGTGGTGGAGGAGGGCAAGGGGGGGCTGAGGGTGGAGACGTGCGATGGTTCGACGAAGGGGTTTGTGAAGTCGGAGGGTTTGGAGAAGATGATCAAAGAGTTGATGGAGGGAGAGAAGGGGAAGGAGGCGAGGAGGGAGGCGAAGGAGCTTGCTGACTTGGCTAGGAAAGCTGTGAGTGAAGGTGGGTCGTCGTGTGCAACGCTGCAGTTGCTTATAGATGAGACAACATTCGAAAAGAATACTAGGGTTCTAGACGATAAATCAGGAGGGTTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

269

Amino Acids

29.89

Weight (kDa)

5.07

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 59 - 218 3.4e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 14, 17, 109, 394, 438, 503
AclWI GGATC 2 cut(s) 226, 513
AcsI RAATTY 1 cut(s) 272
AcvI CACGTG 1 cut(s) 141
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 2 cut(s) 118, 394
AgsI TTSAA 1 cut(s) 332
AjiI CACGTC 1 cut(s) 567
AluBI AGCT 7 cut(s) 27, 212, 217, 224, 514, 676, 698
AluI AGCT 7 cut(s) 27, 212, 217, 224, 514, 676, 698
Alw26I GTCTC 2 cut(s) 557, 743
AlwI GGATC 2 cut(s) 226, 513
AlwNI CAGNNNCTG 1 cut(s) 314
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 2 cut(s) 98, 120
ApaI GGGCCC 1 cut(s) 102
ApeKI GCWGC 3 cut(s) 24, 314, 730
ApoI RAATTY 1 cut(s) 272
Asp700I GAANNNNTTC 1 cut(s) 336
AspLEI GCGC 1 cut(s) 470
AspS9I GGNCC 3 cut(s) 98, 99, 106
AsuHPI GGTGA 1 cut(s) 463
AsuII TTCGAA 1 cut(s) 759
AvaI CYCGRG 1 cut(s) 59
AvaII GGWCC 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 102
BanII GRGCYC 1 cut(s) 102
BauI CACGAG 1 cut(s) 319
BbrPI CACGTG 1 cut(s) 141
BbvCI CCTCAGC 1 cut(s) 554
BbvI GCAGC 3 cut(s) 36, 301, 717
BccI CCATC 6 cut(s) 148, 435, 448, 493, 566, 625
BceAI ACGGC 1 cut(s) 46
BclI TGATCA 1 cut(s) 618
BcoDI GTCTC 2 cut(s) 557, 743
BfaI CTAG 4 cut(s) 248, 690, 771, 779
BfmI CTRYAG 1 cut(s) 731
BisI GCNGC 5 cut(s) 15, 18, 25, 315, 731
BlpI GCTNAGC 1 cut(s) 213
BlsI GCNGC 5 cut(s) 16, 19, 26, 316, 732
BmcAI AGTACT 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 59
BmgBI CACGTC 1 cut(s) 567
BmgT120I GGNCC 3 cut(s) 98, 99, 106
BmiI GGNNCC 1 cut(s) 100
BplI GAGNNNNNCTC 2 cut(s) 302, 334
Bpu10I CCTNAGC 1 cut(s) 554
Bpu1102I GCTNAGC 1 cut(s) 213
Bpu14I TTCGAA 1 cut(s) 759
BsaAI YACGTR 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 394
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 2 cut(s) 159, 446
BseLI CCNNNNNNNGG 2 cut(s) 118, 394
BseMII CTCAG 3 cut(s) 81, 204, 545
BseRI GAGGAG 3 cut(s) 115, 551, 673
BseSI GKGCMC 1 cut(s) 102
BseXI GCAGC 3 cut(s) 36, 301, 717
BshFI GGCC 2 cut(s) 100, 122
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 1 cut(s) 471
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 2 cut(s) 118, 394
BsmAI GTCTC 2 cut(s) 557, 743
BsmBI CGTCTC 1 cut(s) 557
BsmFI GGGAC 1 cut(s) 338
BsmI GAATGC 1 cut(s) 523
BsnI GGCC 2 cut(s) 100, 122
BsoBI CYCGRG 1 cut(s) 59
Bsp119I TTCGAA 1 cut(s) 759
Bsp120I GGGCCC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 3 cut(s) 231, 505, 618
Bsp1720I GCTNAGC 1 cut(s) 213
BspACI CCGC 6 cut(s) 14, 17, 109, 394, 438, 503
BspANI GGCC 2 cut(s) 100, 122
BspCNI CTCAG 3 cut(s) 82, 205, 546
BspLI GGNNCC 1 cut(s) 100
BspMAI CTGCAG 1 cut(s) 735
BspPI GGATC 2 cut(s) 226, 513
BspT104I TTCGAA 1 cut(s) 759
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 3 cut(s) 231, 505, 618
BssSI CACGAG 1 cut(s) 319
BssT1I CCWWGG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 319
Bst4CI ACNGT 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 141
BstBI TTCGAA 1 cut(s) 759
BstC8I GCNNGC 2 cut(s) 22, 678
BstDEI CTNAG 3 cut(s) 90, 213, 554
BstF5I GGATG 2 cut(s) 159, 446
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 3 cut(s) 234, 508, 621
BstMAI GTCTC 2 cut(s) 557, 743
BstMBI GATC 3 cut(s) 231, 505, 618
BstMWI GCNNNNNNNGC 5 cut(s) 11, 30, 686, 695, 736
BstSFI CTRYAG 1 cut(s) 731
BstSLI GKGCMC 1 cut(s) 102
BstV1I GCAGC 3 cut(s) 36, 301, 717
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 2 cut(s) 100, 122
BtgZI GCGATG 1 cut(s) 585
BtrI CACGTC 1 cut(s) 567
BtsCI GGATG 2 cut(s) 159, 446
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 2 cut(s) 87, 433
Cac8I GCNNGC 2 cut(s) 22, 678
CaiI CAGNNNCTG 1 cut(s) 314
CfoI GCGC 1 cut(s) 470
Cfr13I GGNCC 3 cut(s) 98, 99, 106
Csp6I GTAC 1 cut(s) 301
CspCI CAANNNNNGTGG 4 cut(s) 127, 162, 510, 545
CviAII CATG 2 cut(s) 118, 407
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 3 cut(s) 90, 213, 554
DpnI GATC 3 cut(s) 233, 507, 620
DpnII GATC 3 cut(s) 231, 505, 618
EciI GGCGGA 2 cut(s) 98, 518
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 106
Eco72I CACGTG 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
Esp3I CGTCTC 1 cut(s) 557
FaeI CATG 2 cut(s) 121, 410
FaiI YATR 8 cut(s) 35, 119, 192, 287, 408, 464, 466, 743
FaqI GGGAC 1 cut(s) 338
FatI CATG 2 cut(s) 117, 406
FauI CCCGC 1 cut(s) 387
FauNDI CATATG 1 cut(s) 464
FbaI TGATCA 1 cut(s) 618
Fnu4HI GCNGC 5 cut(s) 15, 18, 25, 315, 731
FokI GGATG 2 cut(s) 166, 453
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 5 cut(s) 15, 18, 25, 315, 731
FspBI CTAG 4 cut(s) 248, 690, 771, 779
GlaI GCGC 1 cut(s) 469
GluI GCNGC 5 cut(s) 15, 18, 25, 315, 731
HaeIII GGCC 2 cut(s) 100, 122
HapII CCGG 1 cut(s) 471
HhaI GCGC 1 cut(s) 470
Hin1II CATG 2 cut(s) 121, 410
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HincII GTYRAC 3 cut(s) 43, 72, 385
HindII GTYRAC 3 cut(s) 43, 72, 385
HinfI GANTC 2 cut(s) 92, 481
HpaI GTTAAC 1 cut(s) 72
HpaII CCGG 1 cut(s) 471
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 3 cut(s) 43, 72, 385
Hpy188I TCNGA 2 cut(s) 310, 601
Hpy188III TCNNGA 3 cut(s) 341, 779, 792
Hpy8I GTNNAC 3 cut(s) 43, 72, 385
Hpy99I CGWCG 2 cut(s) 583, 721
HpyAV CCTTC 7 cut(s) 167, 326, 577, 637, 643, 664, 701
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 2 cut(s) 140, 566
HpyCH4V TGCA 6 cut(s) 197, 406, 418, 521, 725, 733
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 30, 686, 695, 736
HpyF3I CTNAG 3 cut(s) 90, 213, 554
HpySE526I ACGT 2 cut(s) 140, 566
Hsp92II CATG 2 cut(s) 121, 410
HspAI GCGC 1 cut(s) 468
Ksp22I TGATCA 1 cut(s) 618
KspAI GTTAAC 1 cut(s) 72
Kzo9I GATC 3 cut(s) 231, 505, 618
LmnI GCTCC 1 cut(s) 673
LpnPI CCDG 8 cut(s) 78, 81, 152, 326, 401, 470, 484, 777
Lsp1109I GCAGC 3 cut(s) 36, 301, 717
MaeI CTAG 4 cut(s) 248, 690, 771, 779
MaeII ACGT 2 cut(s) 140, 566
MaeIII GTNAC 2 cut(s) 204, 349
MalI GATC 3 cut(s) 233, 507, 620
MboI GATC 3 cut(s) 231, 505, 618
MboII GAAGA 1 cut(s) 625
MfeI CAATTG 1 cut(s) 79
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 2 cut(s) 79, 272
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 2 cut(s) 234, 579
MroXI GAANNNNTTC 1 cut(s) 336
MseI TTAA 3 cut(s) 71, 132, 800
MslI CAYNNNNRTG 1 cut(s) 411
MspA1I CMGCKG 2 cut(s) 224, 514
MspI CCGG 1 cut(s) 471
MunI CAATTG 1 cut(s) 79
Mva1269I GAATGC 1 cut(s) 523
MwoI GCNNNNNNNGC 5 cut(s) 11, 30, 686, 695, 736
NdeI CATATG 1 cut(s) 464
NdeII GATC 3 cut(s) 231, 505, 618
NlaIII CATG 2 cut(s) 121, 410
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 204
NspV TTCGAA 1 cut(s) 759
PaeR7I CTCGAG 1 cut(s) 59
PctI GAATGC 1 cut(s) 523
PdmI GAANNNNTTC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 481
PkrI GCNGC 5 cut(s) 16, 19, 26, 316, 732
PleI GAGTC 1 cut(s) 100
PmaCI CACGTG 1 cut(s) 141
PmlI CACGTG 1 cut(s) 141
PpsI GAGTC 1 cut(s) 100
Ppu21I YACGTR 1 cut(s) 141
PspCI CACGTG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 100
PspOMI GGGCCC 1 cut(s) 98
PspPI GGNCC 3 cut(s) 98, 99, 106
PspXI VCTCGAGB 1 cut(s) 59
PstI CTGCAG 1 cut(s) 735
PstNI CAGNNNCTG 1 cut(s) 314
PsuI RGATCY 1 cut(s) 231
PvuII CAGCTG 2 cut(s) 224, 514
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 411
SaqAI TTAA 3 cut(s) 71, 132, 800
SatI GCNGC 5 cut(s) 15, 18, 25, 315, 731
Sau3AI GATC 3 cut(s) 231, 505, 618
Sau96I GGNCC 3 cut(s) 98, 99, 106
ScaI AGTACT 1 cut(s) 302
SchI GAGTC 1 cut(s) 101
SduI GDGCHC 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 731
Sfr274I CTCGAG 1 cut(s) 59
SfuI TTCGAA 1 cut(s) 759
SinI GGWCC 1 cut(s) 106
SlaI CTCGAG 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 79, 272
SsiI CCGC 6 cut(s) 14, 17, 109, 394, 438, 503
SspMI CTAG 4 cut(s) 248, 690, 771, 779
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 2 cut(s) 143, 569
TaqI TCGA 3 cut(s) 60, 578, 759
TasI AATT 2 cut(s) 79, 272
TatI WGTACW 1 cut(s) 300
TauI GCSGC 2 cut(s) 17, 20
TfiI GAWTC 1 cut(s) 481
Tru1I TTAA 3 cut(s) 71, 132, 800
Tru9I TTAA 3 cut(s) 71, 132, 800
TscAI CASTG 2 cut(s) 94, 440
TseFI GTSAC 1 cut(s) 204
TseI GCWGC 3 cut(s) 24, 314, 730
Tsp45I GTSAC 1 cut(s) 204
TspGWI ACGGA 2 cut(s) 118, 368
TspRI CASTG 2 cut(s) 94, 440
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 1 cut(s) 272
XbaI TCTAGA 1 cut(s) 778
XhoI CTCGAG 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 336
XspI CTAG 4 cut(s) 248, 690, 771, 779
ZrmI AGTACT 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.