Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002313

Physical Location & Seq

Genomic Coordinates Reverse (-)

84926139 .. 84926744

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG625500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGTCTCCGACTCCTTCCTCTGGTGGACGCTAGACTCTGCCACTAAGTTCGGCTTCCCGAGGCTCGCCTTCTACGGCTTCAACAACTACGCCGGCTCCGTGAGCAGATTCGTCGCCCAGAATGGCCTCCTCCACGGCCCCGAGTCCGATAACGAGTTAATCACGCTGACTCGGTTTCCTTGGATCAAAATTACCAAAGAGGACTTCGGTCCTTCTTTCAGAAACCTTAGTCCTGAAGGCTCAGAGTTTTTCATGAACGTCGTGGGAGCCGTCGTTCACAGCTTCGGCGTTGTCACAAACAGCTTCTATGGGCTCGAACCAGTCTTCGTCGACTGCTGGAACACCGAGTCTTCTCCCAAGTCATGGAATGTGGGACCACTCTGCCAGCCGAAACCTAAATCAGTACTCCAAGATGACAAGCCTGTCTGGATTGAATGGCTAGACAAGAAGAAGGTTGAAGGCAGCCGTGTTTTGTACGTGGCATTTGGAACTCAAGCGGTGATCTCATCGGAGCAGCTTCAAGAGATAGCAAACGCGTTGGAGAAGTCAGACGTCAACTTTCTGTGGGTGATAAGGAAGAAAGAGAGCTATACTTGGTGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

201

Amino Acids

22.94

Weight (kDa)

5.29

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16890 AT2G16890 AT2G16890 AT2G16890 AT5G14860
fragaria_vesca	FvH4_6g50530
malus_domestica	MD17G1035900.v1.1 MD17G1036000.v1.1 MD17G1036100.v1.1 MD17G1036200.v1.1 MD17G1036300.v1.1 MD17G1036600.v1.1 MD17G1036700.v1.1
prunus_persica	Prupe.3G282600_v2.0.a1 Prupe.3G282700_v2.0.a1
pyrus_communis	pycom17g03290 pycom17g03300
rosa_chinensis	RchiOBHm_Chr2g0170971 RchiOBHm_Chr2g0171031
rosa_laevigata	RLG00000021996 RLG00000021998
rosa_multiflora	Rmu_sc0000224.1_g000007 Rmu_sc0004478.1_g000011 Rmu_sc0007623.1_g000006 Rmu_sc0015854.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080880
rosa_rugosa	Rorug02G0552800 Rorug02G0553200
rosa_samantha	Rh2AG625500 Rh2AG625600 Rh2AG625700 Rh2AG626700 Rh2BG636200 Rh2BG636600 Rh2CG605000 Rh2CG605100 Rh2CG605500 Rh2DG647900 Rh2DG648300
rosa_wichuraiana	Rw2G051820 Rw2G051830 Rw2G051870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
AatII	GACGTC	1 cut(s)	555
AccB7I	CCANNNNNTGG	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	330
AccII	CGCG	1 cut(s)	536
AciI	CCGC	1 cut(s)	497
AclWI	GGATC	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	552
AfaI	GTAC	2 cut(s)	405, 476
AfiI	CCNNNNNNNGG	2 cut(s)	21, 363
AflIII	ACRYGT	1 cut(s)	534
AgsI	TTSAA	4 cut(s)	82, 434, 458, 521
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	4 cut(s)	282, 303, 517, 588
AluI	AGCT	4 cut(s)	282, 303, 517, 588
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	1 cut(s)	191
Ama87I	CYCGRG	2 cut(s)	58, 140
AoxI	GGCC	2 cut(s)	124, 136
ApeKI	GCWGC	2 cut(s)	462, 514
AspS9I	GGNCC	3 cut(s)	137, 209, 374
AsuHPI	GGTGA	2 cut(s)	511, 580
AvaI	CYCGRG	2 cut(s)	58, 140
AvaII	GGWCC	2 cut(s)	209, 374
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	2 cut(s)	316, 342
BbvI	GCAGC	2 cut(s)	474, 526
BceAI	ACGGC	4 cut(s)	91, 151, 254, 450
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	3 cut(s)	32, 440, 604
BisI	GCNGC	2 cut(s)	463, 515
BlsI	GCNGC	2 cut(s)	464, 516
BmcAI	AGTACT	1 cut(s)	405
Bme18I	GGWCC	2 cut(s)	209, 374
BmeT110I	CYCGRG	2 cut(s)	58, 140
BmgT120I	GGNCC	3 cut(s)	137, 209, 374
BmiI	GGNNCC	4 cut(s)	97, 139, 268, 375
BoxI	GACNNNNGTC	1 cut(s)	207
BpiI	GAAGAC	2 cut(s)	316, 342
BpuEI	CTTGAG	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	478
BsaHI	GRCGYC	1 cut(s)	552
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	59, 133, 179
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 258, 288
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 363
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	320
BseDI	CCNNGG	3 cut(s)	59, 133, 179
BseLI	CCNNNNNNNGG	2 cut(s)	21, 363
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	474, 526
Bsh1236I	CGCG	1 cut(s)	536
BshFI	GGCC	2 cut(s)	126, 138
BsiHKCI	CYCGRG	2 cut(s)	58, 140
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	2 cut(s)	21, 363
BsmAI	GTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	126, 138
Bso31I	GGTCTC	1 cut(s)	10
BsoBI	CYCGRG	2 cut(s)	58, 140
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	183, 501
BspACI	CCGC	1 cut(s)	497
BspANI	GGCC	2 cut(s)	126, 138
BspCNI	CTCAG	1 cut(s)	254
BspFNI	CGCG	1 cut(s)	536
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	4 cut(s)	97, 139, 268, 375
BspPI	GGATC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	10
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	59, 133, 179
BssMI	GATC	2 cut(s)	183, 501
BssNI	GRCGYC	1 cut(s)	552
BssT1I	CCWWGG	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	552
BstBAI	YACGTR	1 cut(s)	478
BstC8I	GCNNGC	3 cut(s)	66, 94, 386
BstDEI	CTNAG	3 cut(s)	45, 227, 241
BstDSI	CCRYGG	1 cut(s)	133
BstFNI	CGCG	1 cut(s)	536
BstKTI	GATC	2 cut(s)	186, 504
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	2 cut(s)	183, 501
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstPAI	GACNNNNGTC	1 cut(s)	207
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	2 cut(s)	474, 526
BstV2I	GAAGAC	2 cut(s)	316, 342
BsuRI	GGCC	2 cut(s)	126, 138
BtgI	CCRYGG	1 cut(s)	133
Cac8I	GCNNGC	3 cut(s)	66, 94, 386
CciI	TCATGA	1 cut(s)	252
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	3 cut(s)	137, 209, 374
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	404, 475
CviAII	CATG	2 cut(s)	253, 363
CviQI	GTAC	2 cut(s)	404, 475
DdeI	CTNAG	3 cut(s)	45, 227, 241
DpnI	GATC	2 cut(s)	185, 503
DpnII	GATC	2 cut(s)	183, 501
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	2 cut(s)	209, 374
Eco57I	CTGAAG	1 cut(s)	255
Eco88I	CYCGRG	2 cut(s)	58, 140
EcoT14I	CCWWGG	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	2 cut(s)	256, 366
FaiI	YATR	4 cut(s)	254, 309, 364, 591
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	2 cut(s)	252, 362
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	2 cut(s)	463, 515
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	463, 515
FspBI	CTAG	3 cut(s)	32, 440, 604
GluI	GCNGC	2 cut(s)	463, 515
HaeIII	GGCC	2 cut(s)	126, 138
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	552
Hin1II	CATG	2 cut(s)	256, 366
HincII	GTYRAC	2 cut(s)	331, 556
HindII	GTYRAC	2 cut(s)	331, 556
HinfI	GANTC	6 cut(s)	11, 35, 108, 143, 169, 347
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	511, 580
Hpy166II	GTNNAC	4 cut(s)	27, 277, 331, 556
Hpy188I	TCNGA	6 cut(s)	10, 148, 221, 244, 511, 550
Hpy188III	TCNNGA	5 cut(s)	58, 233, 253, 427, 521
Hpy8I	GTNNAC	4 cut(s)	27, 277, 331, 556
Hpy99I	CGWCG	4 cut(s)	116, 263, 275, 332
HpyAV	CCTTC	6 cut(s)	25, 79, 222, 230, 445, 452
HpyCH4IV	ACGT	3 cut(s)	258, 477, 552
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	3 cut(s)	45, 227, 241
HpySE526I	ACGT	3 cut(s)	258, 477, 552
Hsp92I	GRCGYC	1 cut(s)	552
Hsp92II	CATG	2 cut(s)	256, 366
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	183, 501
LmnI	GCTCC	3 cut(s)	101, 266, 511
LpnPI	CCDG	9 cut(s)	7, 106, 131, 246, 322, 333, 398, 412, 435
Lsp1109I	GCAGC	2 cut(s)	474, 526
MaeI	CTAG	3 cut(s)	32, 440, 604
MaeII	ACGT	3 cut(s)	258, 477, 552
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	185, 503
MboI	GATC	2 cut(s)	183, 501
MboII	GAAGA	4 cut(s)	316, 342, 460, 589
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	1 cut(s)	189
MluI	ACGCGT	1 cut(s)	534
MlyI	GAGTC	5 cut(s)	5, 29, 152, 163, 356
MmeI	TCCRAC	2 cut(s)	33, 519
MnlI	CCTC	5 cut(s)	29, 54, 137, 140, 193
MroNI	GCCGGC	1 cut(s)	92
MseI	TTAA	1 cut(s)	158
MspI	CCGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	1 cut(s)	102
NaeI	GCCGGC	1 cut(s)	94
NdeII	GATC	2 cut(s)	183, 501
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	2 cut(s)	256, 366
NlaIV	GGNNCC	4 cut(s)	97, 139, 268, 375
NmuCI	GTSAC	1 cut(s)	292
PagI	TCATGA	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 267
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	108
PflMI	CCANNNNNTGG	1 cut(s)	363
PkrI	GCNGC	2 cut(s)	464, 516
PleI	GAGTC	5 cut(s)	5, 29, 151, 163, 355
PpsI	GAGTC	5 cut(s)	5, 29, 151, 163, 355
Ppu21I	YACGTR	1 cut(s)	478
PshAI	GACNNNNGTC	1 cut(s)	207
PspN4I	GGNNCC	4 cut(s)	97, 139, 268, 375
PspPI	GGNCC	3 cut(s)	137, 209, 374
RsaI	GTAC	2 cut(s)	405, 476
RsaNI	GTAC	2 cut(s)	404, 475
SalI	GTCGAC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	2 cut(s)	463, 515
Sau3AI	GATC	2 cut(s)	183, 501
Sau96I	GGNCC	3 cut(s)	137, 209, 374
ScaI	AGTACT	1 cut(s)	405
SchI	GAGTC	5 cut(s)	5, 29, 152, 163, 356
SduI	GDGCHC	1 cut(s)	315
SinI	GGWCC	2 cut(s)	209, 374
SmlI	CTYRAG	1 cut(s)	492
SmoI	CTYRAG	1 cut(s)	492
Sse9I	AATT	1 cut(s)	189
SsiI	CCGC	1 cut(s)	497
SspMI	CTAG	3 cut(s)	32, 440, 604
StyI	CCWWGG	1 cut(s)	179
TaiI	ACGT	3 cut(s)	261, 480, 555
TaqI	TCGA	2 cut(s)	315, 330
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	1 cut(s)	189
TatI	WGTACW	1 cut(s)	403
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	2 cut(s)	462, 514
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	2 cut(s)	241, 269
TspGWI	ACGGA	1 cut(s)	88
Van91I	CCANNNNNTGG	1 cut(s)	363
VpaK11BI	GGWCC	2 cut(s)	209, 374
XmiI	GTMKAC	1 cut(s)	330
XspI	CTAG	3 cut(s)	32, 440, 604
ZraI	GACGTC	1 cut(s)	553
ZrmI	AGTACT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.