MD17G1036600.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0002313
Physical Location & Seq
Forward (+)
2597223 .. 2597633
411 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1036600.v1.1.491

Sequence Viewer

Length: 411 bp
ATGATCACGGTGATAAGCCCACATGGGTTGAGTGGCTGGACAAAACACAGGAGGAAGGAAGTAGGGTTTTGTACGTTGTCACAAGCTGAGCTGTCAGCCGAACAGATCCAAGAGATTGCACTAGGGTTGGAAAATTCAATGGTCAACTTTCTGTGGGTCATAAGAAGTAAAGAGTACTCATCAGAGACTGCCACGTGGGACATTAAAGGGTTTGAGAAGAGAGTAAATGGGAGGGGAATGATGGTCAAACAGTGGGTTGACCAGAAGTGGATTTTAATGCATGAGAGTGTGCAAGGTTTTGTAAGCCACTGCGGATGGAAGTCGGTGATGGAAAGCATACGAGCCGGAGTGCCGATTCTGGCATGGCCGATGATGGCGGATCAGTCGCTGAGTGCAAAGTTCGTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

137

Amino Acids

15.47

Weight (kDa)

8.64

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 30 - 133 9.9e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 312, 377
AclWI GGATC 2 cut(s) 100, 387
AcoI YGGCCR 1 cut(s) 365
AcsI RAATTY 1 cut(s) 133
AcvI CACGTG 1 cut(s) 195
AfaI GTAC 2 cut(s) 73, 176
AgsI TTSAA 1 cut(s) 138
AluBI AGCT 2 cut(s) 86, 91
AluI AGCT 2 cut(s) 86, 91
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 2 cut(s) 100, 387
AlwNI CAGNNNCTG 2 cut(s) 188, 388
AoxI GGCC 1 cut(s) 365
ApoI RAATTY 1 cut(s) 133
AsuHPI GGTGA 2 cut(s) 22, 337
BbrPI CACGTG 1 cut(s) 195
BccI CCATC 4 cut(s) 235, 309, 322, 367
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 1 cut(s) 122
BlpI GCTNAGC 1 cut(s) 87
BmcAI AGTACT 1 cut(s) 176
Bpu1102I GCTNAGC 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 195
BseGI GGATG 1 cut(s) 320
BseMII CTCAG 2 cut(s) 78, 380
BshFI GGCC 1 cut(s) 367
BsiSI CCGG 1 cut(s) 345
BslFI GGGAC 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 1 cut(s) 367
Bsp143I GATC 3 cut(s) 3, 105, 379
Bsp1720I GCTNAGC 1 cut(s) 87
BspACI CCGC 2 cut(s) 312, 377
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 2 cut(s) 79, 381
BspPI GGATC 2 cut(s) 100, 387
BssMI GATC 3 cut(s) 3, 105, 379
Bst4CI ACNGT 2 cut(s) 10, 252
Bst6I CTCTTC 1 cut(s) 212
BstBAI YACGTR 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 87, 389
BstF5I GGATG 1 cut(s) 320
BstKTI GATC 3 cut(s) 6, 108, 382
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 3 cut(s) 3, 105, 379
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 1 cut(s) 367
BtsCI GGATG 1 cut(s) 320
BtsI GCAGTG 1 cut(s) 307
BtsIMutI CAGTG 2 cut(s) 257, 307
CaiI CAGNNNCTG 2 cut(s) 188, 388
Csp6I GTAC 2 cut(s) 72, 175
CspCI CAANNNNNGTGG 3 cut(s) 9, 44, 384
CviAII CATG 3 cut(s) 23, 281, 363
CviJI RGCY 8 cut(s) 18, 36, 86, 91, 98, 306, 344, 367
CviKI_1 RGCY 8 cut(s) 18, 36, 86, 91, 98, 306, 344, 367
CviQI GTAC 2 cut(s) 72, 175
DdeI CTNAG 2 cut(s) 87, 389
DpnI GATC 3 cut(s) 5, 107, 381
DpnII GATC 3 cut(s) 3, 105, 379
EaeI YGGCCR 1 cut(s) 365
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
EciI GGCGGA 1 cut(s) 392
Eco72I CACGTG 1 cut(s) 195
EcoT22I ATGCAT 1 cut(s) 282
FaeI CATG 3 cut(s) 26, 284, 366
FaiI YATR 5 cut(s) 24, 161, 282, 338, 364
FaqI GGGAC 1 cut(s) 212
FatI CATG 3 cut(s) 22, 280, 362
FbaI TGATCA 1 cut(s) 3
FokI GGATG 1 cut(s) 327
FspBI CTAG 1 cut(s) 122
HaeIII GGCC 1 cut(s) 367
HapII CCGG 1 cut(s) 345
Hin1II CATG 3 cut(s) 26, 284, 366
HincII GTYRAC 2 cut(s) 145, 259
HindII GTYRAC 2 cut(s) 145, 259
HinfI GANTC 1 cut(s) 355
HpaII CCGG 1 cut(s) 345
HphI GGTGA 2 cut(s) 22, 337
Hpy166II GTNNAC 2 cut(s) 145, 259
Hpy188I TCNGA 1 cut(s) 184
Hpy8I GTNNAC 2 cut(s) 145, 259
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 2 cut(s) 10, 252
HpyCH4IV ACGT 2 cut(s) 74, 194
HpyCH4V TGCA 4 cut(s) 119, 280, 292, 395
HpyF3I CTNAG 2 cut(s) 87, 389
HpySE526I ACGT 2 cut(s) 74, 194
Hsp92II CATG 3 cut(s) 26, 284, 366
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 105, 379
LpnPI CCDG 5 cut(s) 22, 34, 275, 344, 358
MaeI CTAG 1 cut(s) 122
MaeII ACGT 2 cut(s) 74, 194
MaeIII GTNAC 1 cut(s) 78
MalI GATC 3 cut(s) 5, 107, 381
MboI GATC 3 cut(s) 3, 105, 379
MboII GAAGA 1 cut(s) 229
MflI RGATCY 1 cut(s) 105
MluCI AATT 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 2 cut(s) 45, 225
Mph1103I ATGCAT 1 cut(s) 282
MseI TTAA 2 cut(s) 204, 275
MslI CAYNNNNRTG 1 cut(s) 285
MspI CCGG 1 cut(s) 345
NdeII GATC 3 cut(s) 3, 105, 379
NlaIII CATG 3 cut(s) 26, 284, 366
NmuCI GTSAC 1 cut(s) 78
NsiI ATGCAT 1 cut(s) 282
PfeI GAWTC 1 cut(s) 355
PmaCI CACGTG 1 cut(s) 195
PmlI CACGTG 1 cut(s) 195
Ppu21I YACGTR 1 cut(s) 195
PspCI CACGTG 1 cut(s) 195
PstNI CAGNNNCTG 2 cut(s) 188, 388
PsuI RGATCY 1 cut(s) 105
RsaI GTAC 2 cut(s) 73, 176
RsaNI GTAC 2 cut(s) 72, 175
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 2 cut(s) 204, 275
Sau3AI GATC 3 cut(s) 3, 105, 379
ScaI AGTACT 1 cut(s) 176
SetI ASST 5 cut(s) 77, 88, 93, 197, 298
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 1 cut(s) 133
SsiI CCGC 2 cut(s) 312, 377
SspMI CTAG 1 cut(s) 122
TaaI ACNGT 2 cut(s) 10, 252
TaiI ACGT 2 cut(s) 77, 197
TasI AATT 1 cut(s) 133
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 2 cut(s) 204, 275
Tru9I TTAA 2 cut(s) 204, 275
TscAI CASTG 2 cut(s) 257, 314
TseFI GTSAC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 78
TspRI CASTG 2 cut(s) 257, 314
XapI RAATTY 1 cut(s) 133
XspI CTAG 1 cut(s) 122
ZrmI AGTACT 1 cut(s) 176
Zsp2I ATGCAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.