Rorug02G0553200

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002313
Physical Location & Seq
Forward (+)
68033798 .. 68037340
3543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0553200.1

Sequence Viewer

Length: 792 bp
ATGTCGCCAACTGATTCTACACGCGAGGAGAATGTTTACATGGCCAAGTTGGCTGAGCAAGCTGAGCGTTATGAGGAGATGGTTGAGTTTATGGAGAAGGTCGCAAAGACTGTTGATGTTGAGGAGCTAACTGTGGAGGAAAGAAACCTCCTCTCTGTTGCTTATAAGAATGTCATTGGAGCTAGGAGAGCTTCGTGGAGAATTATCTCTTCCATTGAGCAGAAGGAGGAGAGCAGGGGTAATGAAGATCACGTGTCAATCATCAAGGAGTACAGGAGCAAGATCGAGACTGAACTGAGCAAGATCTGTGATGGGATCTTGAACCTTCTCGAGTCCCACCTTATACCCTCAGCATCATCTGCTGAGTCCAAGGTGTTCTACCTCAAGATGAAAGGTGACTACCATAGGTACCTTGCTGAATTTAAGACTGGAGGTGAAAGAAAGGAAGCAGCTGAGAGCACATTGTTGGCTTACAAATCTGCTCAGGACATTGCTCTGGCTGAGTTGGCTCCAACTCACCCAATAAGGCTGGGACTTGCTCTCAACTTCTCAGTGTTCTACTATGAAATCCTTAACTCACCAGACCGTGCTTGCAATCTGGCTAAACAGGCTTTCGATGAGGCTATTTCTGAACTTGACACACTGGGTGAAGAATCATACAAGGACAGTACTTTGATCATGCAACTCCTCCGAGACAATCTGACACTGTGGACCTCTGACATCACGGATGATGCTGGGGATGAAATCAAGGAAGCATCAAAGCGTGAATCAGGCGAAGCCCCCGCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

263

Amino Acids

29.71

Weight (kDa)

4.75

Isoelectric Point (pI)

50.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
14-3-3 PF00244 14 - 238 3.9e-106 14-3-3 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 165
Acc65I GGTACC 1 cut(s) 408
AccB1I GGYRCC 1 cut(s) 408
AccII CGCG 1 cut(s) 24
AciI CCGC 1 cut(s) 783
AclWI GGATC 1 cut(s) 323
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 1 cut(s) 419
AcvI CACGTG 1 cut(s) 253
AdeI CACNNNGTG 1 cut(s) 647
AfaI GTAC 3 cut(s) 272, 410, 670
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 1 cut(s) 322
AluBI AGCT 5 cut(s) 62, 127, 182, 191, 452
AluI AGCT 5 cut(s) 62, 127, 182, 191, 452
Alw21I GWGCWC 1 cut(s) 461
Alw26I GTCTC 2 cut(s) 281, 687
AlwI GGATC 1 cut(s) 323
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 1 cut(s) 449
ApoI RAATTY 1 cut(s) 419
Asp718I GGTACC 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 711
AsuHPI GGTGA 5 cut(s) 407, 446, 509, 570, 659
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 1 cut(s) 711
BalI TGGCCA 1 cut(s) 44
BanI GGYRCC 1 cut(s) 408
BbrPI CACGTG 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 461
BbvCI CCTCAGC 1 cut(s) 349
BbvI GCAGC 1 cut(s) 461
BccI CCATC 2 cut(s) 73, 305
BclI TGATCA 1 cut(s) 675
BcoDI GTCTC 2 cut(s) 281, 687
BfaI CTAG 1 cut(s) 183
BglI GCCNNNNNGGC 1 cut(s) 50
BglII AGATCT 1 cut(s) 303
BisI GCNGC 1 cut(s) 450
BlpI GCTNAGC 2 cut(s) 54, 63
BlsI GCNGC 1 cut(s) 451
BmcAI AGTACT 1 cut(s) 670
Bme18I GGWCC 1 cut(s) 711
BmeT110I CYCGRG 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 711
BmiI GGNNCC 2 cut(s) 410, 510
BmrI ACTGGG 1 cut(s) 653
BmsI GCATC 3 cut(s) 362, 721, 764
BmuI ACTGGG 1 cut(s) 653
BpmI CTGGAG 1 cut(s) 450
Bpu10I CCTNAGC 2 cut(s) 349, 483
Bpu1102I GCTNAGC 2 cut(s) 54, 63
BpuEI CTTGAG 1 cut(s) 368
BsaAI YACGTR 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 369
Bse1I ACTGG 2 cut(s) 433, 648
Bse3DI GCAATG 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 2 cut(s) 733, 745
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 9 cut(s) 45, 54, 287, 354, 363, 444, 492, 497, 564
BseNI ACTGG 2 cut(s) 433, 648
BseRI GAGGAG 6 cut(s) 41, 89, 137, 140, 242, 677
BseXI GCAGC 1 cut(s) 461
BseYI CCCAGC 2 cut(s) 529, 734
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 44
BshNI GGYRCC 1 cut(s) 408
BsiHKAI GWGCWC 1 cut(s) 461
BsiHKCI CYCGRG 1 cut(s) 329
BslFI GGGAC 2 cut(s) 319, 546
BsmAI GTCTC 2 cut(s) 281, 687
BsmFI GGGAC 2 cut(s) 319, 546
BsnI GGCC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 461
Bsp143I GATC 5 cut(s) 247, 282, 303, 315, 675
Bsp1720I GCTNAGC 2 cut(s) 54, 63
BspACI CCGC 1 cut(s) 783
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 9 cut(s) 46, 55, 288, 355, 362, 445, 493, 496, 563
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 410, 510
BspPI GGATC 1 cut(s) 323
BspT107I GGYRCC 1 cut(s) 408
BsrDI GCAATG 1 cut(s) 489
BsrI ACTGG 2 cut(s) 433, 648
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 5 cut(s) 247, 282, 303, 315, 675
BssT1I CCWWGG 1 cut(s) 369
Bst4CI ACNGT 6 cut(s) 112, 133, 587, 668, 708, 789
Bst6I CTCTTC 1 cut(s) 214
BstAPI GCANNNNNTGC 1 cut(s) 359
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 60, 592
BstDEI CTNAG 9 cut(s) 54, 63, 296, 349, 363, 453, 483, 501, 550
BstF5I GGATG 2 cut(s) 733, 745
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 5 cut(s) 250, 285, 306, 318, 678
BstMAI GTCTC 2 cut(s) 281, 687
BstMBI GATC 5 cut(s) 247, 282, 303, 315, 675
BstMWI GCNNNNNNNGC 7 cut(s) 50, 59, 64, 188, 359, 506, 608
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 461
BstX2I RGATCY 2 cut(s) 303, 315
BstYI RGATCY 2 cut(s) 303, 315
BsuRI GGCC 1 cut(s) 44
BtsCI GGATG 2 cut(s) 733, 745
BtsIMutI CAGTG 3 cut(s) 558, 641, 704
Cac8I GCNNGC 2 cut(s) 60, 592
Cfr13I GGNCC 1 cut(s) 711
Csp6I GTAC 3 cut(s) 271, 409, 669
CviAII CATG 2 cut(s) 40, 679
CviQI GTAC 3 cut(s) 271, 409, 669
DdeI CTNAG 9 cut(s) 54, 63, 296, 349, 363, 453, 483, 501, 550
DpnI GATC 5 cut(s) 249, 284, 305, 317, 677
DpnII GATC 5 cut(s) 247, 282, 303, 315, 675
DraIII CACNNNGTG 1 cut(s) 647
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 711
Eco72I CACGTG 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 2 cut(s) 43, 682
FaiI YATR 9 cut(s) 41, 72, 92, 165, 344, 405, 564, 658, 680
FaqI GGGAC 2 cut(s) 319, 546
FatI CATG 2 cut(s) 39, 678
FauI CCCGC 1 cut(s) 790
FbaI TGATCA 1 cut(s) 675
Fnu4HI GCNGC 1 cut(s) 450
FokI GGATG 2 cut(s) 740, 752
Fsp4HI GCNGC 1 cut(s) 450
FspBI CTAG 1 cut(s) 183
GluI GCNGC 1 cut(s) 450
GsaI CCCAGC 2 cut(s) 533, 738
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 1 cut(s) 44
Hin1II CATG 2 cut(s) 43, 682
HinfI GANTC 5 cut(s) 14, 332, 365, 653, 767
HphI GGTGA 5 cut(s) 407, 446, 509, 570, 659
Hpy166II GTNNAC 2 cut(s) 37, 711
Hpy188I TCNGA 4 cut(s) 631, 692, 702, 718
Hpy188III TCNNGA 5 cut(s) 286, 319, 329, 385, 485
Hpy8I GTNNAC 2 cut(s) 37, 711
HpyAV CCTTC 3 cut(s) 91, 217, 335
HpyCH4III ACNGT 6 cut(s) 112, 133, 587, 668, 708, 789
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 594, 682
HpyF10VI GCNNNNNNNGC 7 cut(s) 50, 59, 64, 188, 359, 506, 608
HpyF3I CTNAG 9 cut(s) 54, 63, 296, 349, 363, 453, 483, 501, 550
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 2 cut(s) 43, 682
KpnI GGTACC 1 cut(s) 412
Ksp22I TGATCA 1 cut(s) 675
Kzo9I GATC 5 cut(s) 247, 282, 303, 315, 675
LmnI GCTCC 4 cut(s) 124, 179, 276, 514
Lsp1109I GCAGC 1 cut(s) 461
LweI GCATC 3 cut(s) 362, 721, 764
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 395
MalI GATC 5 cut(s) 249, 284, 305, 317, 677
MboI GATC 5 cut(s) 247, 282, 303, 315, 675
MboII GAAGA 3 cut(s) 201, 257, 662
MflI RGATCY 2 cut(s) 303, 315
MhlI GDGCHC 1 cut(s) 461
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 2 cut(s) 201, 419
MluNI TGGCCA 1 cut(s) 44
MlyI GAGTC 2 cut(s) 341, 374
MmeI TCCRAC 1 cut(s) 536
Mox20I TGGCCA 1 cut(s) 44
MscI TGGCCA 1 cut(s) 44
MseI TTAA 2 cut(s) 423, 573
Msp20I TGGCCA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 452
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 7 cut(s) 50, 59, 64, 188, 359, 506, 608
NdeII GATC 5 cut(s) 247, 282, 303, 315, 675
NlaIII CATG 2 cut(s) 43, 682
NlaIV GGNNCC 2 cut(s) 410, 510
NmuCI GTSAC 1 cut(s) 395
PaeR7I CTCGAG 1 cut(s) 329
PfeI GAWTC 3 cut(s) 14, 653, 767
PkrI GCNGC 1 cut(s) 451
PleI GAGTC 2 cut(s) 340, 373
PmaCI CACGTG 1 cut(s) 253
PmlI CACGTG 1 cut(s) 253
PpsI GAGTC 2 cut(s) 340, 373
Ppu21I YACGTR 1 cut(s) 253
PsiI TTATAA 1 cut(s) 165
PspCI CACGTG 1 cut(s) 253
PspFI CCCAGC 2 cut(s) 529, 734
PspN4I GGNNCC 2 cut(s) 410, 510
PspPI GGNCC 1 cut(s) 711
PsuI RGATCY 2 cut(s) 303, 315
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 3 cut(s) 272, 410, 670
RsaNI GTAC 3 cut(s) 271, 409, 669
SaqAI TTAA 2 cut(s) 423, 573
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 5 cut(s) 247, 282, 303, 315, 675
Sau96I GGNCC 1 cut(s) 711
ScaI AGTACT 1 cut(s) 670
SchI GAGTC 2 cut(s) 341, 374
SduI GDGCHC 1 cut(s) 461
SfaNI GCATC 3 cut(s) 362, 721, 764
Sfr274I CTCGAG 1 cut(s) 329
SinI GGWCC 1 cut(s) 711
SlaI CTCGAG 1 cut(s) 329
SmlI CTYRAG 2 cut(s) 329, 383
SmoI CTYRAG 2 cut(s) 329, 383
Sse9I AATT 2 cut(s) 201, 419
SsiI CCGC 1 cut(s) 783
SspMI CTAG 1 cut(s) 183
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 6 cut(s) 112, 133, 587, 668, 708, 789
TaiI ACGT 1 cut(s) 255
TaqI TCGA 3 cut(s) 285, 330, 615
TasI AATT 2 cut(s) 201, 419
TatI WGTACW 2 cut(s) 270, 668
TfiI GAWTC 3 cut(s) 14, 653, 767
Tru1I TTAA 2 cut(s) 423, 573
Tru9I TTAA 2 cut(s) 423, 573
TscAI CASTG 3 cut(s) 558, 648, 711
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 1 cut(s) 449
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 4 cut(s) 258, 404, 579, 756
TspGWI ACGGA 1 cut(s) 740
TspRI CASTG 3 cut(s) 558, 648, 711
VpaK11BI GGWCC 1 cut(s) 711
XapI RAATTY 1 cut(s) 419
XhoI CTCGAG 1 cut(s) 329
XspI CTAG 1 cut(s) 183
ZrmI AGTACT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.