Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001894

Physical Location & Seq

Genomic Coordinates Forward (+)

38198418 .. 38199653

Gene Structure 1236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g51542.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAGAATTCCCCTATGTCTATTGTGTTTAGAATCTTACAGCATCTATGGTTTCAGGATTTGTATTCACTGTCCACTTTGTTTTTAAGTTTTTCATGTATTGGTAATGCTATTGGCAAGGAGATTCACAATGTTTCAAGATCCTGGGCTTCTCATTTACAAGAATATACTCTATCGATTGTTGACAAACGAAAGTCCTCCCTACCTCTCCTGCAGGCTCAAGAAATATACATAACTGTGATGCCCTCGTTACTCTCTTCCATTGCTGGTCCTTTAGTGATGCATGAGGTAGAGGGAGGCACTGCTCTAGATTCTATGGCTGCTATTTCCACGATGGATCCTAAATTGGGAGCTCAAATGTTGCTGGCTATCCTATTTTACAATAACATTTTCACTAGAAAAGATATAAGTTGCTTTACCATGTTGCCGAAACTTTTGACAATGCTTCCAGCACTTGCCTCACAGTCTGTGACGATTCCTCTTGTAGTTCAGACTATCTTACCAATGCTTCAGAAGGATGCGAAACCTTATGTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3730

Protein Analysis

180

Amino Acids

19.95

Weight (kDa)

6.89

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27670
fragaria_vesca	FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51542 FvH4_6g51551
malus_domestica	MD09G1028200.v1.1 MD17G1029800.v1.1
prunus_persica	Prupe.3G290300_v2.0.a1 Prupe.3G290500_v2.0.a1
pyrus_communis	pycom111g02210 pycom111g02220 pycom17g02680 pycom17g02700 pycom17g02710 pycom17g02720
rosa_chinensis	RchiOBHm_Chr2g0173001
rosa_laevigata	RLG00000022148
rosa_multiflora	Rmu_co8290889.1_g000001 Rmu_sc0012743.1_g000007 Rmu_sc0026490.1_g000001 Rmu_sc0032348.1_g000003
rosa_roxburghii	Rroxscaffold_2G00079360
rosa_rugosa	Rorug02G0248700 Rorug02G0366500 Rorug02G0564400 Rorug02G0564500 Rorug02G0564800 Rorug05G0265600.1
rosa_samantha	Rh2AG641000 Rh2AG641100 Rh2AG641600 Rh2AG643600 Rh2AG643800 Rh2BG654700 Rh2CG620000 Rh2DG668000 Rh2DG668100
rosa_wichuraiana	Rw2G052910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	135, 332, 345
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	494
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	138
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw21I	GWGCWC	1 cut(s)	355
AlwI	GGATC	3 cut(s)	135, 332, 345
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	269
BamHI	GGATCC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	1 cut(s)	328
BciT130I	CCWGG	1 cut(s)	145
BfaI	CTAG	2 cut(s)	308, 396
BfmI	CTRYAG	1 cut(s)	212
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	4 cut(s)	52, 231, 270, 508
BpuEI	CTTGAG	1 cut(s)	204
Bsa29I	ATCGAT	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	145
BseCI	ATCGAT	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	523
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMI	GCAATG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	307
BshVI	ATCGAT	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	355
BslI	CCNNNNNNNGG	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	140, 337
BspDI	ATCGAT	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	1 cut(s)	216
BspPI	GGATC	3 cut(s)	135, 332, 345
BsrDI	GCAATG	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	140, 337
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	3 cut(s)	72, 238, 465
Bst6I	CTCTTC	1 cut(s)	262
BstC8I	GCNNGC	2 cut(s)	216, 366
BstF5I	GGATG	1 cut(s)	523
BstKTI	GATC	2 cut(s)	143, 340
BstMBI	GATC	2 cut(s)	140, 337
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BstSFI	CTRYAG	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	307
BstX2I	RGATCY	2 cut(s)	140, 337
BstYI	RGATCY	2 cut(s)	140, 337
Bsu15I	ATCGAT	1 cut(s)	176
BsuTUI	ATCGAT	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	523
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	68, 300
Cac8I	GCNNGC	2 cut(s)	216, 366
Cfr13I	GGNCC	1 cut(s)	269
ClaI	ATCGAT	1 cut(s)	176
CviAII	CATG	3 cut(s)	96, 284, 421
CviJI	RGCY	5 cut(s)	149, 218, 320, 353, 368
CviKI_1	RGCY	5 cut(s)	149, 218, 320, 353, 368
DpnI	GATC	2 cut(s)	142, 339
DpnII	GATC	2 cut(s)	140, 337
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
Ecl136II	GAGCTC	1 cut(s)	353
Eco24I	GRGCYC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	269
Eco53kI	GAGCTC	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	494
EcoICRI	GAGCTC	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	355
FaeI	CATG	3 cut(s)	99, 287, 424
FatI	CATG	3 cut(s)	95, 283, 420
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	1 cut(s)	530
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	2 cut(s)	308, 396
GluI	GCNGC	1 cut(s)	321
Hin1II	CATG	3 cut(s)	99, 287, 424
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	4 cut(s)	33, 124, 311, 475
Hpy166II	GTNNAC	2 cut(s)	75, 184
Hpy188I	TCNGA	2 cut(s)	492, 513
Hpy188III	TCNNGA	4 cut(s)	56, 138, 221, 308
Hpy8I	GTNNAC	2 cut(s)	75, 184
HpyAV	CCTTC	1 cut(s)	508
HpyCH4III	ACNGT	3 cut(s)	72, 238, 465
HpyCH4V	TGCA	2 cut(s)	214, 283
Hsp92II	CATG	3 cut(s)	99, 287, 424
Kzo9I	GATC	2 cut(s)	140, 337
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	8 cut(s)	41, 130, 157, 200, 224, 252, 350, 462
Lsp1109I	GCAGC	1 cut(s)	307
LweI	GCATC	4 cut(s)	52, 231, 270, 508
MaeI	CTAG	2 cut(s)	308, 396
MaeIII	GTNAC	2 cut(s)	249, 469
MalI	GATC	2 cut(s)	142, 339
MboI	GATC	2 cut(s)	140, 337
MboII	GAAGA	1 cut(s)	249
MflI	RGATCY	2 cut(s)	140, 337
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	2 cut(s)	7, 344
MnlI	CCTC	8 cut(s)	208, 216, 256, 280, 286, 290, 469, 489
Mph1103I	ATGCAT	1 cut(s)	285
MseI	TTAA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	145
NdeII	GATC	2 cut(s)	140, 337
NlaIII	CATG	3 cut(s)	99, 287, 424
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	469
NsiI	ATGCAT	1 cut(s)	285
PfeI	GAWTC	4 cut(s)	33, 124, 311, 475
PkrI	GCNGC	1 cut(s)	322
Psp124BI	GAGCTC	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	269
PstI	CTGCAG	1 cut(s)	216
PsuI	RGATCY	2 cut(s)	140, 337
RseI	CAYNNNNRTG	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	2 cut(s)	140, 337
Sau96I	GGNCC	1 cut(s)	269
SbfI	CCTGCAGG	1 cut(s)	216
ScrFI	CCNGG	1 cut(s)	145
SdaI	CCTGCAGG	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	355
SetI	ASST	4 cut(s)	208, 291, 355, 529
SfaNI	GCATC	4 cut(s)	52, 231, 270, 508
SfcI	CTRYAG	1 cut(s)	212
SinI	GGWCC	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
Sse8387I	CCTGCAGG	1 cut(s)	216
Sse9I	AATT	2 cut(s)	7, 344
SspMI	CTAG	2 cut(s)	308, 396
SstI	GAGCTC	1 cut(s)	355
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	3 cut(s)	72, 238, 465
TaqI	TCGA	1 cut(s)	176
TasI	AATT	2 cut(s)	7, 344
TfiI	GAWTC	4 cut(s)	33, 124, 311, 475
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	2 cut(s)	75, 307
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	1 cut(s)	84
TspRI	CASTG	2 cut(s)	75, 307
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	1 cut(s)	7
XbaI	TCTAGA	1 cut(s)	307
XspI	CTAG	2 cut(s)	308, 396
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.