Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001894

Physical Location & Seq

Genomic Coordinates Forward (+)

86403365 .. 86411159

Gene Structure 7795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG641000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2910 bp

ATGGACTCCTACACTCCCCTACTGGAGAAAACCCGGGTTCCCCAACCTTCCCTCCAAAAATACGCCGTGATTTCAATCTTCTCGAAGCTCCGATCCGCCCCGAACTACCTAGACTCCGACTCCGAACCCGGAAGAGACGCCATTTCCCAGTGCCTCCACTCCACTTCCCCCGCCGTCGTCGATCAATCGGTTCGCGAGCTCTGCGGCATCGTCGCCGACGACGGCTCCAAAATTGATGTCCACCGCGGCTTGCTGGAGCTCCAGTCCGCGCTCGAAGGATCCGATTCGAAGTTCGTCGACCTGTTTGTGAAAGGTTTGGGGTTTTTGGTCCGGTTAGGGTTTCAGAAGAGCAATGGCAAGTGGTCTTTCAGCAACACAGAGTCTCACCCCTTGATTAAGGTTCTTTCGTGCCGGAGCGATGTGGAGGCTGAACTTGTGCAGCAAATTTTACTGTTTATGGCACAGAATAGGCGGTTGGGAATGGTGGAAGTATGTGAGTTCTTGAGACCGTTTATAAACTATTCGATTTTGAGAATACCGTTTTCGGAAATGTCATTTATGTTTGCGAGGCGTTTAGTATCATCAATGGCGTCTCTTTGTTGCTCAATTCCTGTTGATGCAATGCCGGTGCTTAAATTGTTGACAGAATGTCTTCAGTACGTTCCGCACAAGAGTTCAGAAGATTTCCGGAATTTCATATATTTAGCGGAATGTATGGTGGATGCATATACAGTGGTTTTGAGGCATTTAGCTGGAACTAGATTGCTGATTGCTGAGGCTCAACTCTGTGGTTTGGAACTGTTTGAGAAAATTATATCGATTTGCACAACTGGTCATAAGCACTCCGGTTCAATTGAGCCTCTAGTTGAACTGTCCAAGAACTTATTGTTGTCCCAGAAAGAGAATGGGTTCCCTTATGCACCTAAGTTATCATCAGCTATGCTTTCGTTATTTATTGTCCTTGTCCAATCAGAGCTCGAGCATGAACAACTTTCCACGTTGAAACTTCTGCACCTTCTCTTGAAGTGGAAGTATGGAAACGAAAATGGTGTAGACAGAAGTGGAGGTGCTATGAGCGAGGAGCTTTTGTTCATATTTCCTGTCATTGGTCTACTGTCATCTCCTTCTAAACATGTCAAAGGAGCGGCAACAGATCTGCTTGTCGTGCTAGAAAGACTTTTAGTAAGAGTTTTGGTAGCACCAAAGGATAAACCAGCAAAAGAAGCAGGGCATCCTTCTCTAAGCACACCTGGATCTATTGTGTTTAGAATCTTACAGCATCTCTGGTTTCAGGATTCTTCTTCATTGTCCAGTTTGTTTTTAAATTTTTCTGCTATCGGTAAAACTAATGGCGAGGAGATTTATGATGTACCAAGATCGTGGGCTTCTCATTTACAAGAGTATACTCTATCGATTGTTGACAAACGAAAGTCCTCCCTACCTCTCTCACAGACTCAAGAAATATACATAACTGAGATGCCCTCGTTACTCTCTGCCATTGCTGGTCTTTTAGTGATGAATGAGGTACAGGGAGGCACTGCTCTAGATTCTTTGGCTGCTATTGCCACGATGGATCCTAAACTGGGAGCTCAAATGTTGCTGGCAATCCTATTTTACAATAACATATTCACTAGAAAAGATATAAGTCGCTTTACCATGTTGCCAAAACTTTTGACAATGCTTCCAGCACTTGCCTCACAGTCTGTGATGATTCCTCTTGTAGTTCAGACTATCTTACCAATGCTTCATAAGGATGTGAAACCAACTTTACATGCGACAGCCATTCGCTTGCTTTGTCAGACCTGGGAGACCAATGACCGTGCCTTCGGGAGTTTGCAGGGAGTGTTGGTTCCAAAAAGGTTCACTGACTTAAAGGCTGAGAGAAATATATGCATCAGTATGGCTGCATCAGTTCGGGATGTTTGCAGAAAAAATCCTGATAGGGGAGTGGACCTCATCTTATCTGTCTCGGCTTGCATTGAGAACAATGATCCGATTATTCAAGGTGTTGGTTTTCAAAGTCTTGCCCACCTTTGTGAAGCTGACGTAATTGATTTTTACACAGCCTGGGATGTCATCAGGAAGCATGTTCTGAATTACACTGTAGACCCAAATCTTGCTCAGAGCCTTTGCCTTCTTCTGAGGTGGGGTGCAATGGACGCTGAAGCACATCCTGAAGCCTCAAAAAACATCTTGCAGATCTTATGGAGTGTTAGCATCTCTACTCATCCTGGTCTGGAGACACAGTGGGCAAAGGCAAGGGCCTCTTCCTTTAAGGCCTTGGCTCAATTTGAGGTATCACATATTAAACAAAAAATTCAAGATTTCAAGAAAAGGAACCTGGAGTTGCTTTCTTGTGAAGCAAACATTACTGTACTGAATGCCATGGAAGAACTTCTGGTCAAGATAATAACATATGAGCACCTCACAAGGCGGAGATTGGTTAAGGAGAAAAGAGTTGCAGGAAGTAAGATCGAGAAGCTGCTGGATGTGTTTCCCCAGGTGATCTTTTCTTCAGGGAAACGAAGTGATGCCAGGGAATTACCTGGTGCAGCCTTGCTGTGTCTTTCCTTTACTCCTAAAGATGTGAACACCCAAGGGCTATCAAGGGGATTCCGGGATATTCATGGTGGATATGAGAATGCTCTGGTGGAACTAGCTTCATCCCTTCAGCTCTCAAGAAATATTTTTGTTGCCCTTATTTCACTGGAATCATGGAAATCCTTCATGCGGCGTTGGCTGAGGGCTGATATCTTGTCCTTTGATGCTAAAGTGTCATCTATCGTCTTGGATAAAACCACTAAAGCTGCTAGTGACATTCTAAAGAGTATGATAAAAACAGCAGAAGAGGCTCTTCCTAGATCTGCTGAAAACATTGCACTAGCTGTTGGTGCCCTTTGTGCGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3730

Protein Analysis

969

Amino Acids

107.57

Weight (kDa)

8.13

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3730	PF12530	84 - 362	3.8e-43	Focadhesin/RST1, DUF3730
DUF3730	PF12530	550 - 761	3.1e-62	Focadhesin/RST1, DUF3730

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27670
fragaria_vesca	FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51542 FvH4_6g51551
malus_domestica	MD09G1028200.v1.1 MD17G1029800.v1.1
prunus_persica	Prupe.3G290300_v2.0.a1 Prupe.3G290500_v2.0.a1
pyrus_communis	pycom111g02210 pycom111g02220 pycom17g02680 pycom17g02700 pycom17g02710 pycom17g02720
rosa_chinensis	RchiOBHm_Chr2g0173001
rosa_laevigata	RLG00000022148
rosa_multiflora	Rmu_co8290889.1_g000001 Rmu_sc0012743.1_g000007 Rmu_sc0026490.1_g000001 Rmu_sc0032348.1_g000003
rosa_roxburghii	Rroxscaffold_2G00079360
rosa_rugosa	Rorug02G0248700 Rorug02G0366500 Rorug02G0564400 Rorug02G0564500 Rorug02G0564800 Rorug05G0265600.1
rosa_samantha	Rh2AG641000 Rh2AG641100 Rh2AG641600 Rh2AG643600 Rh2AG643800 Rh2BG654700 Rh2CG620000 Rh2DG668000 Rh2DG668100
rosa_wichuraiana	Rw2G052910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	515
AccB1I	GGYRCC	1 cut(s)	2891
AccBSI	CCGCTC	1 cut(s)	1145
AccI	GTMKAC	5 cut(s)	297, 1053, 1111, 1403, 2106
AccII	CGCG	3 cut(s)	195, 246, 269
AccIII	TCCGGA	1 cut(s)	687
AclWI	GGATC	7 cut(s)	87, 273, 286, 1261, 1568, 1581, 1985
AcsI	RAATTY	4 cut(s)	444, 691, 1324, 2316
AcuI	CTGAAG	5 cut(s)	638, 2184, 2196, 2499, 2654
AcyI	GRCGYC	2 cut(s)	138, 590
AfaI	GTAC	4 cut(s)	659, 1371, 1527, 2376
AfiI	CCNNNNNNNGG	5 cut(s)	1106, 1583, 1943, 2730, 2902
AflIII	ACRYGT	1 cut(s)	1132
AgsI	TTSAA	9 cut(s)	75, 852, 869, 1003, 1024, 2003, 2018, 2321, 2329
AhdI	GACNNNNNGTC	1 cut(s)	648
AjnI	CCWGG	8 cut(s)	1249, 1802, 2066, 2230, 2340, 2499, 2534, 2545
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AleI	CACNNNNGTG	1 cut(s)	2034
AloI	GAACNNNNNNTCC	4 cut(s)	1073, 1105, 1833, 1865
Alw21I	GWGCWC	5 cut(s)	201, 261, 978, 1591, 2424
Alw26I	GTCTC	7 cut(s)	129, 387, 499, 597, 1802, 1972, 2234
AlwI	GGATC	7 cut(s)	87, 273, 286, 1261, 1568, 1581, 1985
Ama87I	CYCGRG	2 cut(s)	33, 977
Aor13HI	TCCGGA	1 cut(s)	687
AoxI	GGCC	2 cut(s)	2262, 2277
ApeKI	GCWGC	6 cut(s)	439, 1556, 1904, 2482, 2552, 2807
ApoI	RAATTY	4 cut(s)	444, 691, 1324, 2316
ArsI	GACNNNNNNTTYG	4 cut(s)	222, 254, 1808, 1840
Asp700I	GAANNNNTTC	4 cut(s)	651, 908, 2394, 2723
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	3 cut(s)	328, 1951, 2262
AsuC2I	CCSGG	4 cut(s)	34, 35, 129, 2618
AsuHPI	GGTGA	2 cut(s)	377, 2515
AsuII	TTCGAA	1 cut(s)	287
AvaI	CYCGRG	2 cut(s)	33, 977
AvaII	GGWCC	2 cut(s)	328, 1951
BaeGI	GKGCMC	1 cut(s)	2896
BamHI	GGATCC	2 cut(s)	278, 1573
BanI	GGYRCC	1 cut(s)	2891
BanII	GRGCYC	4 cut(s)	201, 261, 978, 1591
BbsI	GAAGAC	1 cut(s)	644
Bbv12I	GWGCWC	5 cut(s)	201, 261, 978, 1591, 2424
BbvCI	CCTCAGC	2 cut(s)	774, 2741
BbvI	GCAGC	6 cut(s)	451, 1543, 1891, 2469, 2564, 2794
BccI	CCATC	1 cut(s)	1564
BceAI	ACGGC	3 cut(s)	50, 158, 238
BciT130I	CCWGG	8 cut(s)	1251, 1804, 2068, 2232, 2342, 2501, 2536, 2547
BcnI	CCSGG	4 cut(s)	34, 35, 129, 2618
BcoDI	GTCTC	7 cut(s)	129, 387, 499, 597, 1802, 1972, 2234
BfmI	CTRYAG	1 cut(s)	2103
BglII	AGATCT	3 cut(s)	1153, 2199, 2861
Bme18I	GGWCC	2 cut(s)	328, 1951
BmeRI	GACNNNNNGTC	1 cut(s)	648
BmeT110I	CYCGRG	2 cut(s)	33, 977
BmgT120I	GGNCC	3 cut(s)	328, 1951, 2262
BmiI	GGNNCC	8 cut(s)	39, 226, 280, 911, 1575, 1851, 2339, 2893
BmrI	ACTGGG	2 cut(s)	142, 1592
BmuI	ACTGGG	2 cut(s)	142, 1592
BpiI	GAAGAC	1 cut(s)	644
BplI	GAGNNNNNCTC	4 cut(s)	1466, 1498, 1938, 1970
BpmI	CTGGAG	5 cut(s)	44, 245, 275, 2258, 2363
Bpu10I	CCTNAGC	2 cut(s)	774, 2741
Bpu14I	TTCGAA	1 cut(s)	287
BpuEI	CTTGAG	3 cut(s)	523, 1440, 2662
BpuMI	CCSGG	4 cut(s)	34, 35, 129, 2618
Bsa29I	ATCGAT	2 cut(s)	818, 1412
BsaBI	GATNNNNATC	1 cut(s)	74
BsaHI	GRCGYC	2 cut(s)	138, 590
BsaI	GGTCTC	2 cut(s)	499, 1802
BsaJI	CCNNGG	9 cut(s)	33, 244, 1803, 2067, 2280, 2385, 2499, 2535, 2596
BsaWI	WCCGGW	3 cut(s)	330, 687, 845
Bsc4I	CCNNNNNNNGG	5 cut(s)	1106, 1583, 1943, 2730, 2902
Bse118I	RCCGGY	1 cut(s)	625
Bse1I	ACTGG	7 cut(s)	27, 148, 262, 835, 1311, 1587, 2712
Bse3DI	GCAATG	5 cut(s)	358, 627, 1497, 2160, 2874
Bse8I	GATNNNNATC	1 cut(s)	74
BseAI	TCCGGA	1 cut(s)	687
BseBI	CCWGG	8 cut(s)	1251, 1804, 2068, 2232, 2342, 2501, 2536, 2547
BseCI	ATCGAT	2 cut(s)	818, 1412
BseDI	CCNNGG	9 cut(s)	33, 244, 1803, 2067, 2280, 2385, 2499, 2535, 2596
BseGI	GGATG	9 cut(s)	727, 1231, 1759, 1924, 2077, 2170, 2227, 2494, 2663
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	5 cut(s)	1106, 1583, 1943, 2730, 2902
BseMI	GCAATG	5 cut(s)	358, 627, 1497, 2160, 2874
BseMII	CTCAG	6 cut(s)	765, 1464, 1869, 2132, 2135, 2732
BseNI	ACTGG	7 cut(s)	27, 148, 262, 835, 1311, 1587, 2712
BseRI	GAGGAG	2 cut(s)	1094, 1370
BseSI	GKGCMC	1 cut(s)	2896
BseXI	GCAGC	6 cut(s)	451, 1543, 1891, 2469, 2564, 2794
BsgI	GTGCAG	3 cut(s)	458, 995, 2571
Bsh1236I	CGCG	3 cut(s)	195, 246, 269
BshFI	GGCC	2 cut(s)	2264, 2279
BshNI	GGYRCC	1 cut(s)	2891
BshVI	ATCGAT	2 cut(s)	818, 1412
BsiHKAI	GWGCWC	5 cut(s)	201, 261, 978, 1591, 2424
BsiHKCI	CYCGRG	2 cut(s)	33, 977
BsiSI	CCGG	8 cut(s)	34, 129, 331, 412, 626, 688, 846, 2617
BslFI	GGGAC	1 cut(s)	877
BslI	CCNNNNNNNGG	5 cut(s)	1106, 1583, 1943, 2730, 2902
BsmAI	GTCTC	7 cut(s)	129, 387, 499, 597, 1802, 1972, 2234
BsmBI	CGTCTC	2 cut(s)	129, 597
BsmFI	GGGAC	1 cut(s)	877
BsmI	GAATGC	2 cut(s)	2386, 2647
BsnI	GGCC	2 cut(s)	2264, 2279
Bso31I	GGTCTC	2 cut(s)	499, 1802
BsoBI	CYCGRG	2 cut(s)	33, 977
Bsp119I	TTCGAA	1 cut(s)	287
Bsp1286I	GDGCHC	6 cut(s)	201, 261, 978, 1591, 2424, 2896
Bsp13I	TCCGGA	1 cut(s)	687
Bsp19I	CCATGG	1 cut(s)	2385
Bsp68I	TCGCGA	1 cut(s)	195
BspANI	GGCC	2 cut(s)	2264, 2279
BspCNI	CTCAG	6 cut(s)	766, 1465, 1870, 2133, 2134, 2733
BspDI	ATCGAT	2 cut(s)	818, 1412
BspEI	TCCGGA	1 cut(s)	687
BspFNI	CGCG	3 cut(s)	195, 246, 269
BspLI	GGNNCC	8 cut(s)	39, 226, 280, 911, 1575, 1851, 2339, 2893
BspPI	GGATC	7 cut(s)	87, 273, 286, 1261, 1568, 1581, 1985
BspQI	GCTCTTC	2 cut(s)	341, 2859
BspT104I	TTCGAA	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	2891
BspTNI	GGTCTC	2 cut(s)	499, 1802
BsrBI	CCGCTC	1 cut(s)	1145
BsrDI	GCAATG	5 cut(s)	358, 627, 1497, 2160, 2874
BsrFI	RCCGGY	1 cut(s)	625
BsrI	ACTGG	7 cut(s)	27, 148, 262, 835, 1311, 1587, 2712
BssAI	RCCGGY	1 cut(s)	625
BssECI	CCNNGG	9 cut(s)	33, 244, 1803, 2067, 2280, 2385, 2499, 2535, 2596
BssNAI	GTATAC	1 cut(s)	1404
BssNI	GRCGYC	2 cut(s)	138, 590
BssT1I	CCWWGG	3 cut(s)	2280, 2385, 2596
Bst1107I	GTATAC	1 cut(s)	1404
Bst2UI	CCWGG	8 cut(s)	1251, 1804, 2068, 2232, 2342, 2501, 2536, 2547
Bst6I	CTCTTC	5 cut(s)	127, 341, 2272, 2841, 2859
BstACI	GRCGYC	2 cut(s)	138, 590
BstBI	TTCGAA	1 cut(s)	287
BstC8I	GCNNGC	5 cut(s)	197, 251, 1602, 1790, 1975
BstDEI	CTNAG	8 cut(s)	774, 924, 1241, 1473, 1878, 2121, 2141, 2741
BstDSI	CCRYGG	2 cut(s)	244, 2385
BstF5I	GGATG	9 cut(s)	727, 1231, 1759, 1924, 2077, 2170, 2227, 2494, 2663
BstFNI	CGCG	3 cut(s)	195, 246, 269
BstHHI	GCGC	1 cut(s)	271
BstMAI	GTCTC	7 cut(s)	129, 387, 499, 597, 1802, 1972, 2234
BstMWI	GCNNNNNNNGC	9 cut(s)	201, 1165, 1223, 1562, 2159, 2737, 2849, 2891, 2900
BstNI	CCWGG	8 cut(s)	1251, 1804, 2068, 2232, 2342, 2501, 2536, 2547
BstNSI	RCATGY	3 cut(s)	1136, 1775, 2090
BstSFI	CTRYAG	1 cut(s)	2103
BstSLI	GKGCMC	1 cut(s)	2896
BstUI	CGCG	3 cut(s)	195, 246, 269
BstV1I	GCAGC	6 cut(s)	451, 1543, 1891, 2469, 2564, 2794
BstV2I	GAAGAC	1 cut(s)	644
BstX2I	RGATCY	6 cut(s)	278, 1153, 1253, 1573, 2199, 2861
BstXI	CCANNNNNNTGG	1 cut(s)	1380
BstYI	RGATCY	6 cut(s)	278, 1153, 1253, 1573, 2199, 2861
BstZ17I	GTATAC	1 cut(s)	1404
Bsu15I	ATCGAT	2 cut(s)	818, 1412
BsuRI	GGCC	2 cut(s)	2264, 2279
BsuTUI	ATCGAT	2 cut(s)	818, 1412
BtgI	CCRYGG	2 cut(s)	244, 2385
BtgZI	GCGATG	1 cut(s)	432
BtsCI	GGATG	9 cut(s)	727, 1231, 1759, 1924, 2077, 2170, 2227, 2494, 2663
BtsI	GCAGTG	1 cut(s)	1536
BtsIMutI	CAGTG	7 cut(s)	155, 738, 1536, 1863, 2100, 2252, 2705
BtuMI	TCGCGA	1 cut(s)	195
Cac8I	GCNNGC	5 cut(s)	197, 251, 1602, 1790, 1975
CfoI	GCGC	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	625
Cfr13I	GGNCC	3 cut(s)	328, 1951, 2262
Cfr42I	CCGCGG	1 cut(s)	247
Cfr9I	CCCGGG	1 cut(s)	33
ClaI	ATCGAT	2 cut(s)	818, 1412
CseI	GACGC	3 cut(s)	146, 579, 2168
CsiI	ACCWGGT	1 cut(s)	2545
Csp6I	GTAC	4 cut(s)	658, 1370, 1526, 2375
CviAII	CATG	9 cut(s)	983, 1133, 1657, 1772, 2087, 2386, 2627, 2715, 2728
CviQI	GTAC	4 cut(s)	658, 1370, 1526, 2375
DdeI	CTNAG	8 cut(s)	774, 924, 1241, 1473, 1878, 2121, 2141, 2741
DraI	TTTAAA	1 cut(s)	1323
DriI	GACNNNNNGTC	1 cut(s)	648
Eam1104I	CTCTTC	5 cut(s)	127, 341, 2272, 2841, 2859
Eam1105I	GACNNNNNGTC	1 cut(s)	648
EarI	CTCTTC	5 cut(s)	127, 341, 2272, 2841, 2859
EciI	GGCGGA	2 cut(s)	85, 2449
Ecl136II	GAGCTC	4 cut(s)	199, 259, 976, 1589
Eco130I	CCWWGG	3 cut(s)	2280, 2385, 2596
Eco147I	AGGCCT	1 cut(s)	2279
Eco24I	GRGCYC	4 cut(s)	201, 261, 978, 1591
Eco31I	GGTCTC	2 cut(s)	499, 1802
Eco32I	GATATC	1 cut(s)	2752
Eco47I	GGWCC	2 cut(s)	328, 1951
Eco53kI	GAGCTC	4 cut(s)	199, 259, 976, 1589
Eco57I	CTGAAG	5 cut(s)	638, 2184, 2196, 2499, 2654
Eco88I	CYCGRG	2 cut(s)	33, 977
EcoICRI	GAGCTC	4 cut(s)	199, 259, 976, 1589
EcoO109I	RGGNCCY	1 cut(s)	2262
EcoRII	CCWGG	8 cut(s)	1249, 1802, 2066, 2230, 2340, 2499, 2534, 2545
EcoRV	GATATC	1 cut(s)	2752
EcoT14I	CCWWGG	3 cut(s)	2280, 2385, 2596
EcoT22I	ATGCAT	2 cut(s)	727, 1895
EcoT38I	GRGCYC	4 cut(s)	201, 261, 978, 1591
ErhI	CCWWGG	3 cut(s)	2280, 2385, 2596
Esp3I	CGTCTC	2 cut(s)	129, 597
FaeI	CATG	9 cut(s)	986, 1136, 1660, 1775, 2090, 2389, 2630, 2718, 2731
FalI	AAGNNNNNCTT	4 cut(s)	2251, 2283, 2838, 2870
FaqI	GGGAC	1 cut(s)	877
FatI	CATG	9 cut(s)	982, 1132, 1656, 1771, 2086, 2385, 2626, 2714, 2727
FauI	CCCGC	1 cut(s)	178
FauNDI	CATATG	1 cut(s)	2416
FblI	GTMKAC	5 cut(s)	297, 1053, 1111, 1403, 2106
FokI	GGATG	9 cut(s)	734, 1218, 1766, 1931, 2084, 2157, 2214, 2501, 2650
FriOI	GRGCYC	4 cut(s)	201, 261, 978, 1591
GlaI	GCGC	1 cut(s)	270
GsuI	CTGGAG	5 cut(s)	44, 245, 275, 2258, 2363
HaeIII	GGCC	2 cut(s)	2264, 2279
HapII	CCGG	8 cut(s)	34, 129, 331, 412, 626, 688, 846, 2617
HgaI	GACGC	3 cut(s)	146, 579, 2168
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	2 cut(s)	138, 590
Hin1II	CATG	9 cut(s)	986, 1136, 1660, 1775, 2090, 2389, 2630, 2718, 2731
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HincII	GTYRAC	3 cut(s)	298, 642, 1420
HindII	GTYRAC	3 cut(s)	298, 642, 1420
HpaII	CCGG	8 cut(s)	34, 129, 331, 412, 626, 688, 846, 2617
HphI	GGTGA	2 cut(s)	377, 2515
Hpy99I	CGWCG	6 cut(s)	179, 182, 215, 221, 224, 299
HpyAV	CCTTC	9 cut(s)	57, 269, 1025, 1134, 1245, 1834, 2144, 2678, 2734
HpyCH4IV	ACGT	3 cut(s)	660, 998, 2046
HpyF10VI	GCNNNNNNNGC	9 cut(s)	201, 1165, 1223, 1562, 2159, 2737, 2849, 2891, 2900
HpyF3I	CTNAG	8 cut(s)	774, 924, 1241, 1473, 1878, 2121, 2141, 2741
HpySE526I	ACGT	3 cut(s)	660, 998, 2046
Hsp92I	GRCGYC	2 cut(s)	138, 590
Hsp92II	CATG	9 cut(s)	986, 1136, 1660, 1775, 2090, 2389, 2630, 2718, 2731
HspAI	GCGC	1 cut(s)	269
Kpn2I	TCCGGA	1 cut(s)	687
KspI	CCGCGG	1 cut(s)	247
LguI	GCTCTTC	2 cut(s)	341, 2859
LmnI	GCTCC	8 cut(s)	93, 230, 256, 264, 414, 1081, 1142, 1586
Lsp1109I	GCAGC	6 cut(s)	451, 1543, 1891, 2469, 2564, 2794
MabI	ACCWGGT	1 cut(s)	2545
MaeII	ACGT	3 cut(s)	660, 998, 2046
MaeIII	GTNAC	2 cut(s)	1485, 2813
MbiI	CCGCTC	1 cut(s)	1145
MfeI	CAATTG	1 cut(s)	852
MflI	RGATCY	6 cut(s)	278, 1153, 1253, 1573, 2199, 2861
MhlI	GDGCHC	6 cut(s)	201, 261, 978, 1591, 2424, 2896
MlyI	GAGTC	4 cut(s)	107, 113, 389, 1447
MmeI	TCCRAC	1 cut(s)	141
Mph1103I	ATGCAT	2 cut(s)	727, 1895
MroI	TCCGGA	1 cut(s)	687
MroXI	GAANNNNTTC	4 cut(s)	651, 908, 2394, 2723
MseI	TTAA	8 cut(s)	396, 633, 1322, 1871, 2274, 2307, 2445, 2908
MslI	CAYNNNNRTG	3 cut(s)	1752, 1898, 2034
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	8 cut(s)	34, 129, 331, 412, 626, 688, 846, 2617
MunI	CAATTG	1 cut(s)	852
Mva1269I	GAATGC	2 cut(s)	2386, 2647
MvaI	CCWGG	8 cut(s)	1251, 1804, 2068, 2232, 2342, 2501, 2536, 2547
MvnI	CGCG	3 cut(s)	195, 246, 269
MwoI	GCNNNNNNNGC	9 cut(s)	201, 1165, 1223, 1562, 2159, 2737, 2849, 2891, 2900
NciI	CCSGG	4 cut(s)	34, 35, 129, 2618
NcoI	CCATGG	1 cut(s)	2385
NdeI	CATATG	1 cut(s)	2416
NlaIII	CATG	9 cut(s)	986, 1136, 1660, 1775, 2090, 2389, 2630, 2718, 2731
NlaIV	GGNNCC	8 cut(s)	39, 226, 280, 911, 1575, 1851, 2339, 2893
NmeAIII	GCCGAG	1 cut(s)	1949
NmuCI	GTSAC	1 cut(s)	2813
NruI	TCGCGA	1 cut(s)	195
NsiI	ATGCAT	2 cut(s)	727, 1895
NspI	RCATGY	3 cut(s)	1136, 1775, 2090
NspV	TTCGAA	1 cut(s)	287
OliI	CACNNNNGTG	1 cut(s)	2034
PaeR7I	CTCGAG	1 cut(s)	977
PceI	AGGCCT	1 cut(s)	2279
PciI	ACATGT	1 cut(s)	1132
PciSI	GCTCTTC	2 cut(s)	341, 2859
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 279
PctI	GAATGC	2 cut(s)	2386, 2647
PdmI	GAANNNNTTC	4 cut(s)	651, 908, 2394, 2723
PfeI	GAWTC	7 cut(s)	284, 1269, 1295, 1547, 1711, 2613, 2711
PfoI	TCCNGGA	1 cut(s)	2616
PleI	GAGTC	4 cut(s)	107, 113, 388, 1447
PpsI	GAGTC	4 cut(s)	107, 113, 388, 1447
PscI	ACATGT	1 cut(s)	1132
PsiI	TTATAA	1 cut(s)	515
Psp124BI	GAGCTC	4 cut(s)	201, 261, 978, 1591
Psp6I	CCWGG	8 cut(s)	1249, 1802, 2066, 2230, 2340, 2499, 2534, 2545
PspGI	CCWGG	8 cut(s)	1249, 1802, 2066, 2230, 2340, 2499, 2534, 2545
PspN4I	GGNNCC	8 cut(s)	39, 226, 280, 911, 1575, 1851, 2339, 2893
PspPI	GGNCC	3 cut(s)	328, 1951, 2262
PspXI	VCTCGAGB	1 cut(s)	977
PsuI	RGATCY	6 cut(s)	278, 1153, 1253, 1573, 2199, 2861
RruI	TCGCGA	1 cut(s)	195
RsaI	GTAC	4 cut(s)	659, 1371, 1527, 2376
RsaNI	GTAC	4 cut(s)	658, 1370, 1526, 2375
RseI	CAYNNNNRTG	3 cut(s)	1752, 1898, 2034
SacI	GAGCTC	4 cut(s)	201, 261, 978, 1591
SacII	CCGCGG	1 cut(s)	247
SalI	GTCGAC	1 cut(s)	296
SapI	GCTCTTC	2 cut(s)	341, 2859
SaqAI	TTAA	8 cut(s)	396, 633, 1322, 1871, 2274, 2307, 2445, 2908
Sau96I	GGNCC	3 cut(s)	328, 1951, 2262
SchI	GAGTC	4 cut(s)	107, 113, 389, 1447
SduI	GDGCHC	6 cut(s)	201, 261, 978, 1591, 2424, 2896
SexAI	ACCWGGT	1 cut(s)	2545
SfcI	CTRYAG	1 cut(s)	2103
Sfr274I	CTCGAG	1 cut(s)	977
Sfr303I	CCGCGG	1 cut(s)	247
SfuI	TTCGAA	1 cut(s)	287
SgrBI	CCGCGG	1 cut(s)	247
SinI	GGWCC	2 cut(s)	328, 1951
SlaI	CTCGAG	1 cut(s)	977
SmaI	CCCGGG	1 cut(s)	35
SmiMI	CAYNNNNRTG	3 cut(s)	1752, 1898, 2034
SmlI	CTYRAG	4 cut(s)	502, 977, 1455, 2677
SmoI	CTYRAG	4 cut(s)	502, 977, 1455, 2677
SseBI	AGGCCT	1 cut(s)	2279
SspI	AATATT	1 cut(s)	2686
SstI	GAGCTC	4 cut(s)	201, 261, 978, 1591
StuI	AGGCCT	1 cut(s)	2279
StyI	CCWWGG	3 cut(s)	2280, 2385, 2596
TaiI	ACGT	3 cut(s)	663, 1001, 2049
TatI	WGTACW	1 cut(s)	2374
TauI	GCSGC	4 cut(s)	207, 249, 1148, 2734
TfiI	GAWTC	7 cut(s)	284, 1269, 1295, 1547, 1711, 2613, 2711
Tru1I	TTAA	8 cut(s)	396, 633, 1322, 1871, 2274, 2307, 2445, 2908
Tru9I	TTAA	8 cut(s)	396, 633, 1322, 1871, 2274, 2307, 2445, 2908
TscAI	CASTG	7 cut(s)	155, 738, 1543, 1870, 2107, 2252, 2712
TseFI	GTSAC	1 cut(s)	2813
TseI	GCWGC	6 cut(s)	439, 1556, 1904, 2482, 2552, 2807
Tsp45I	GTSAC	1 cut(s)	2813
TspDTI	ATGAA	9 cut(s)	685, 999, 1081, 1293, 1532, 1736, 2615, 2652, 2716
TspMI	CCCGGG	1 cut(s)	33
TspRI	CASTG	7 cut(s)	155, 738, 1543, 1870, 2107, 2252, 2712
VpaK11BI	GGWCC	2 cut(s)	328, 1951
XapI	RAATTY	4 cut(s)	444, 691, 1324, 2316
XbaI	TCTAGA	1 cut(s)	1543
XceI	RCATGY	3 cut(s)	1136, 1775, 2090
XcmI	CCANNNNNNNNNTGG	1 cut(s)	902
XhoI	CTCGAG	1 cut(s)	977
XmaI	CCCGGG	1 cut(s)	33
XmiI	GTMKAC	5 cut(s)	297, 1053, 1111, 1403, 2106
XmnI	GAANNNNTTC	4 cut(s)	651, 908, 2394, 2723
Zsp2I	ATGCAT	2 cut(s)	727, 1895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.