Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8290889.1

Orthogroup ID

OG0001894

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 860

Gene Structure 859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8290889.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgctagaaagacttttagtaagagttttggtagcaccaaaggataaaccagcaaaagaagcagggcatccctctctaagcacacctggatctattgtgtttagaatcttacagaatctctggtttcaggattcttcttcattgtccagtttgtttttaaaattttcttctatcagtaaaactaatggcgaggagatttatgatgtaccaagatcgtgggcttctcatttacaagagtatactctatcgattgttgacaaacgaaagtcctccctacctctctcgcagactcaagaaatatacataactgagatgccctcgttactctctgccattgctggtcttttagtgatgaataaggtacagggaggcactgctctagattctttggctgctattgccacgatggatcctaaactgggagctcaaatgttgctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3730

Protein Analysis

146

Amino Acids

15.99

Weight (kDa)

7.99

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27670
fragaria_vesca	FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51542 FvH4_6g51551
malus_domestica	MD09G1028200.v1.1 MD17G1029800.v1.1
prunus_persica	Prupe.3G290300_v2.0.a1 Prupe.3G290500_v2.0.a1
pyrus_communis	pycom111g02210 pycom111g02220 pycom17g02680 pycom17g02700 pycom17g02710 pycom17g02720
rosa_chinensis	RchiOBHm_Chr2g0173001
rosa_laevigata	RLG00000022148
rosa_multiflora	Rmu_co8290889.1_g000001 Rmu_sc0012743.1_g000007 Rmu_sc0026490.1_g000001 Rmu_sc0032348.1_g000003
rosa_roxburghii	Rroxscaffold_2G00079360
rosa_rugosa	Rorug02G0248700 Rorug02G0366500 Rorug02G0564400 Rorug02G0564500 Rorug02G0564800 Rorug05G0265600.1
rosa_samantha	Rh2AG641000 Rh2AG641100 Rh2AG641600 Rh2AG643600 Rh2AG643800 Rh2BG654700 Rh2CG620000 Rh2DG668000 Rh2DG668100
rosa_wichuraiana	Rw2G052910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	239
AclWI	GGATC	3 cut(s)	97, 404, 417
AcsI	RAATTY	1 cut(s)	161
AfaI	GTAC	2 cut(s)	207, 363
AfiI	CCNNNNNNNGG	1 cut(s)	419
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	1 cut(s)	425
AluI	AGCT	1 cut(s)	425
Alw21I	GWGCWC	1 cut(s)	427
AlwI	GGATC	3 cut(s)	97, 404, 417
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	1 cut(s)	400
BciT130I	CCWGG	1 cut(s)	87
BfaI	CTAG	2 cut(s)	5, 380
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	1 cut(s)	87
BmrI	ACTGGG	1 cut(s)	428
BmsI	GCATC	2 cut(s)	76, 303
BmuI	ACTGGG	1 cut(s)	428
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
BpuEI	CTTGAG	1 cut(s)	276
Bsa29I	ATCGAT	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse1I	ACTGG	2 cut(s)	147, 423
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	87
BseCI	ATCGAT	1 cut(s)	248
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	147, 423
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	379
BshVI	ATCGAT	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	427
BslI	CCNNNNNNNGG	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	3 cut(s)	89, 212, 409
BspCNI	CTCAG	1 cut(s)	301
BspDI	ATCGAT	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	411
BspPI	GGATC	3 cut(s)	97, 404, 417
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	2 cut(s)	147, 423
BssMI	GATC	3 cut(s)	89, 212, 409
BssNAI	GTATAC	1 cut(s)	240
Bst1107I	GTATAC	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	77, 309
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	3 cut(s)	92, 215, 412
BstMBI	GATC	3 cut(s)	89, 212, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 398
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	379
BstX2I	RGATCY	2 cut(s)	89, 409
BstXI	CCANNNNNNTGG	1 cut(s)	216
BstYI	RGATCY	2 cut(s)	89, 409
BstZ17I	GTATAC	1 cut(s)	240
Bsu15I	ATCGAT	1 cut(s)	248
BsuTUI	ATCGAT	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	372
ClaI	ATCGAT	1 cut(s)	248
Csp6I	GTAC	2 cut(s)	206, 362
CviJI	RGCY	3 cut(s)	221, 392, 425
CviKI_1	RGCY	3 cut(s)	221, 392, 425
CviQI	GTAC	2 cut(s)	206, 362
DdeI	CTNAG	2 cut(s)	77, 309
DpnI	GATC	3 cut(s)	91, 214, 411
DpnII	GATC	3 cut(s)	89, 212, 409
DraI	TTTAAA	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	425
Eco24I	GRGCYC	1 cut(s)	427
Eco53kI	GAGCTC	1 cut(s)	425
EcoICRI	GAGCTC	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	427
FaiI	YATR	4 cut(s)	201, 240, 301, 305
FblI	GTMKAC	1 cut(s)	239
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	1 cut(s)	54
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	2 cut(s)	5, 380
GluI	GCNGC	1 cut(s)	393
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	5 cut(s)	105, 115, 131, 289, 383
Hpy166II	GTNNAC	2 cut(s)	240, 256
Hpy188III	TCNNGA	3 cut(s)	128, 293, 380
Hpy8I	GTNNAC	2 cut(s)	240, 256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 398
HpyF3I	CTNAG	2 cut(s)	77, 309
Kzo9I	GATC	3 cut(s)	89, 212, 409
LmnI	GCTCC	1 cut(s)	422
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	2 cut(s)	76, 303
MaeI	CTAG	2 cut(s)	5, 380
MaeIII	GTNAC	1 cut(s)	321
MalI	GATC	3 cut(s)	91, 214, 411
MboI	GATC	3 cut(s)	89, 212, 409
MboII	GAAGA	3 cut(s)	126, 129, 159
MflI	RGATCY	2 cut(s)	89, 409
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	6 cut(s)	82, 184, 280, 288, 328, 362
MseI	TTAA	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	59, 398
NdeII	GATC	3 cut(s)	89, 212, 409
NlaIV	GGNNCC	1 cut(s)	411
PfeI	GAWTC	4 cut(s)	105, 115, 131, 383
PkrI	GCNGC	1 cut(s)	394
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
Psp124BI	GAGCTC	1 cut(s)	427
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	411
PsuI	RGATCY	2 cut(s)	89, 409
RsaI	GTAC	2 cut(s)	207, 363
RsaNI	GTAC	2 cut(s)	206, 362
SacI	GAGCTC	1 cut(s)	427
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	3 cut(s)	89, 212, 409
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	4 cut(s)	88, 280, 363, 427
SfaNI	GCATC	2 cut(s)	76, 303
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
Sse9I	AATT	1 cut(s)	161
SspMI	CTAG	2 cut(s)	5, 380
SstI	GAGCTC	1 cut(s)	427
StyD4I	CCNGG	1 cut(s)	85
TaqI	TCGA	1 cut(s)	248
TasI	AATT	1 cut(s)	161
TfiI	GAWTC	4 cut(s)	105, 115, 131, 383
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	379
TseI	GCWGC	1 cut(s)	392
TspDTI	ATGAA	2 cut(s)	129, 368
TspRI	CASTG	1 cut(s)	379
XapI	RAATTY	1 cut(s)	161
XbaI	TCTAGA	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	239
XspI	CTAG	2 cut(s)	5, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.