FvH4_6g51551

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001894
Physical Location & Seq
Forward (+)
38208954 .. 38210273
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51551.t1

Sequence Viewer

Length: 567 bp
ATGAGTGGGTTGAAGCTGGAATTTGCATGCAACCAGATCGCATTCCCTCCTGAGCGGAAAAGATGCTACCGTGATATGCTTAACTATGTTGTGATTCTAGAGGACATCGGAAAGAGCAAAACTTGCAAGCAAGCTGGATCAACTTTGTATGTACAGCAGTCAAGCTCAAAGCAGTCCGTGCTCGAAGGATCCGATTCCAAGTTCGTCAGCCTCTTCGTTAAAGGTTTGGGGTTTTTGGTCCGGTTAGGGTTTCAGAAAAGCAATGGCGACTGGTGTTTCACCAATACAGAGTCTCATCCCTTCGTTAAGGTTCTTTCGTGCCGAAGCGATGTGGAGGATGAACTTGTGCAGCAAGTGTTACTGTTTACGGCACAGAACAGGCAGTTGGGAATGGTGGAAGTATGCAAGTTCTTGAGACCGTTTCTAAACTATTCGGTTTTGAGGATACCGTTTCTGGAGAATTCGTCTATGTTTGCGAGGCGTTTGGTATCGTCAGTGGCGTCTCTTTGTTGCTCGATTCCTGTTGATGCAATGCCTGTGCTTAAATTATTGACAGATTGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3730

Protein Analysis

189

Amino Acids

21.14

Weight (kDa)

8.74

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3730 PF12530 61 - 173 2e-17 Focadhesin/RST1, DUF3730
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 55
AciI CCGC 1 cut(s) 55
AclWI GGATC 3 cut(s) 145, 183, 196
AcsI RAATTY 2 cut(s) 20, 460
AcyI GRCGYC 1 cut(s) 500
AfaI GTAC 1 cut(s) 153
AgsI TTSAA 1 cut(s) 13
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 3 cut(s) 16, 134, 165
AluI AGCT 3 cut(s) 16, 134, 165
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 3 cut(s) 297, 409, 507
AlwI GGATC 3 cut(s) 145, 183, 196
ApeKI GCWGC 1 cut(s) 349
ApoI RAATTY 2 cut(s) 20, 460
AspS9I GGNCC 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 271
AvaII GGWCC 1 cut(s) 238
BamHI GGATCC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 361
BceAI ACGGC 1 cut(s) 384
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciVI GTATCC 1 cut(s) 438
BcoDI GTCTC 3 cut(s) 297, 409, 507
BfaI CTAG 1 cut(s) 98
BfuI GTATCC 1 cut(s) 438
BisI GCNGC 1 cut(s) 350
BlsI GCNGC 1 cut(s) 351
Bme18I GGWCC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 190
BmsI GCATC 2 cut(s) 53, 517
BpmI CTGGAG 1 cut(s) 476
Bpu10I CCTNAGC 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 433
BsaHI GRCGYC 1 cut(s) 500
BsaI GGTCTC 1 cut(s) 409
BsaWI WCCGGW 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 2 cut(s) 268, 537
BseGI GGATG 2 cut(s) 295, 343
BseMI GCAATG 2 cut(s) 268, 537
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 361
BsgI GTGCAG 1 cut(s) 368
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 241
BsmAI GTCTC 3 cut(s) 297, 409, 507
BsmBI CGTCTC 1 cut(s) 507
BsmI GAATGC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 409
Bsp1286I GDGCHC 1 cut(s) 183
Bsp1407I TGTACA 1 cut(s) 151
Bsp143I GATC 3 cut(s) 36, 137, 188
BspACI CCGC 1 cut(s) 55
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 3 cut(s) 145, 183, 196
BspTNI GGTCTC 1 cut(s) 409
BsrBI CCGCTC 1 cut(s) 55
BsrDI GCAATG 2 cut(s) 268, 537
BsrGI TGTACA 1 cut(s) 151
BsrI ACTGG 1 cut(s) 275
BssMI GATC 3 cut(s) 36, 137, 188
BssNI GRCGYC 1 cut(s) 500
Bst4CI ACNGT 4 cut(s) 71, 363, 420, 450
Bst6I CTCTTC 1 cut(s) 218
BstACI GRCGYC 1 cut(s) 500
BstAPI GCANNNNNTGC 2 cut(s) 123, 178
BstAUI TGTACA 1 cut(s) 151
BstC8I GCNNGC 3 cut(s) 28, 128, 132
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 295, 343
BstKTI GATC 3 cut(s) 39, 140, 191
BstMAI GTCTC 3 cut(s) 297, 409, 507
BstMBI GATC 3 cut(s) 36, 137, 188
BstMWI GCNNNNNNNGC 2 cut(s) 123, 178
BstNSI RCATGY 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 188
BstYI RGATCY 1 cut(s) 188
BsuI GTATCC 1 cut(s) 438
BtgZI GCGATG 1 cut(s) 342
BtsCI GGATG 2 cut(s) 295, 343
BtsIMutI CAGTG 1 cut(s) 501
Cac8I GCNNGC 3 cut(s) 28, 128, 132
Cfr13I GGNCC 1 cut(s) 238
CseI GACGC 1 cut(s) 489
Csp6I GTAC 1 cut(s) 152
CviAII CATG 1 cut(s) 27
CviJI RGCY 4 cut(s) 16, 134, 165, 210
CviKI_1 RGCY 4 cut(s) 16, 134, 165, 210
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 1 cut(s) 51
DpnI GATC 3 cut(s) 38, 139, 190
DpnII GATC 3 cut(s) 36, 137, 188
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco31I GGTCTC 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 460
Esp3I CGTCTC 1 cut(s) 507
FaeI CATG 1 cut(s) 30
FaiI YATR 6 cut(s) 28, 77, 87, 150, 403, 470
FatI CATG 1 cut(s) 26
Fnu4HI GCNGC 1 cut(s) 350
FokI GGATG 2 cut(s) 282, 350
Fsp4HI GCNGC 1 cut(s) 350
FspBI CTAG 1 cut(s) 98
GluI GCNGC 1 cut(s) 350
GsuI CTGGAG 1 cut(s) 476
HapII CCGG 1 cut(s) 241
HgaI GACGC 1 cut(s) 489
Hin1I GRCGYC 1 cut(s) 500
Hin1II CATG 1 cut(s) 30
HinfI GANTC 4 cut(s) 94, 194, 290, 517
HpaII CCGG 1 cut(s) 241
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 3 cut(s) 110, 193, 255
Hpy188III TCNNGA 4 cut(s) 50, 98, 412, 455
Hpy8I GTNNAC 1 cut(s) 366
HpyAV CCTTC 2 cut(s) 179, 310
HpyCH4III ACNGT 4 cut(s) 71, 363, 420, 450
HpyCH4V TGCA 6 cut(s) 26, 30, 126, 349, 405, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 178
HpyF3I CTNAG 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 500
Hsp92II CATG 1 cut(s) 30
Kzo9I GATC 3 cut(s) 36, 137, 188
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 2 cut(s) 53, 517
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 357
MalI GATC 3 cut(s) 38, 139, 190
MbiI CCGCTC 1 cut(s) 55
MboI GATC 3 cut(s) 36, 137, 188
MboII GAAGA 1 cut(s) 205
MflI RGATCY 1 cut(s) 188
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 3 cut(s) 20, 460, 545
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 6 cut(s) 57, 94, 221, 328, 435, 471
MseI TTAA 4 cut(s) 81, 219, 306, 543
MspI CCGG 1 cut(s) 241
Mva1269I GAATGC 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 123, 178
NdeII GATC 3 cut(s) 36, 137, 188
NlaIII CATG 1 cut(s) 30
NlaIV GGNNCC 1 cut(s) 190
NspI RCATGY 1 cut(s) 30
PaeI GCATGC 1 cut(s) 30
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 497
PctI GAATGC 1 cut(s) 41
PfeI GAWTC 3 cut(s) 94, 194, 517
PkrI GCNGC 1 cut(s) 351
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 238
PsuI RGATCY 1 cut(s) 188
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SaqAI TTAA 4 cut(s) 81, 219, 306, 543
SatI GCNGC 1 cut(s) 350
Sau3AI GATC 3 cut(s) 36, 137, 188
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 1 cut(s) 299
SduI GDGCHC 1 cut(s) 183
SetI ASST 5 cut(s) 18, 136, 167, 226, 312
SfaNI GCATC 2 cut(s) 53, 517
SinI GGWCC 1 cut(s) 238
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
SphI GCATGC 1 cut(s) 30
Sse9I AATT 3 cut(s) 20, 460, 545
SsiI CCGC 1 cut(s) 55
SspMI CTAG 1 cut(s) 98
TaaI ACNGT 4 cut(s) 71, 363, 420, 450
TaqI TCGA 2 cut(s) 183, 515
TasI AATT 3 cut(s) 20, 460, 545
TatI WGTACW 1 cut(s) 151
TfiI GAWTC 3 cut(s) 94, 194, 517
Tru1I TTAA 4 cut(s) 81, 219, 306, 543
Tru9I TTAA 4 cut(s) 81, 219, 306, 543
TscAI CASTG 1 cut(s) 501
TseI GCWGC 1 cut(s) 349
TspDTI ATGAA 1 cut(s) 354
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 1 cut(s) 501
VpaK11BI GGWCC 1 cut(s) 238
XapI RAATTY 2 cut(s) 20, 460
XbaI TCTAGA 1 cut(s) 97
XceI RCATGY 1 cut(s) 30
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.