Encoded by
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G27670 |
| fragaria_vesca | FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51542 FvH4_6g51551 |
| malus_domestica | MD09G1028200.v1.1 MD17G1029800.v1.1 |
| prunus_persica | Prupe.3G290300_v2.0.a1 Prupe.3G290500_v2.0.a1 |
| pyrus_communis | pycom111g02210 pycom111g02220 pycom17g02680 pycom17g02700 pycom17g02710 pycom17g02720 |
| rosa_chinensis | RchiOBHm_Chr2g0173001 |
| rosa_laevigata | RLG00000022148 |
| rosa_multiflora | Rmu_co8290889.1_g000001 Rmu_sc0012743.1_g000007 Rmu_sc0026490.1_g000001 Rmu_sc0032348.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00079360 |
| rosa_rugosa | Rorug02G0248700 Rorug02G0366500 Rorug02G0564400 Rorug02G0564500 Rorug02G0564800 Rorug05G0265600.1 |
| rosa_samantha | Rh2AG641000 Rh2AG641100 Rh2AG641600 Rh2AG643600 Rh2AG643800 Rh2BG654700 Rh2CG620000 Rh2DG668000 Rh2DG668100 |
| rosa_wichuraiana | Rw2G052910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 272 |
| Acc36I | ACCTGC | 2 cut(s) | 272, 1126 |
| AccB1I | GGYRCC | 1 cut(s) | 328 |
| AccBSI | CCGCTC | 1 cut(s) | 394 |
| AccI | GTMKAC | 1 cut(s) | 190 |
| AciI | CCGC | 5 cut(s) | 311, 394, 479, 713, 1223 |
| AclI | AACGTT | 1 cut(s) | 659 |
| AclWI | GGATC | 3 cut(s) | 286, 299, 679 |
| AcoI | YGGCCR | 1 cut(s) | 1267 |
| AcsI | RAATTY | 3 cut(s) | 750, 797, 1159 |
| AcuI | CTGAAG | 1 cut(s) | 33 |
| AfaI | GTAC | 2 cut(s) | 853, 1070 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 924 |
| AgsI | TTSAA | 4 cut(s) | 170, 205, 338, 561 |
| AjiI | CACGTC | 2 cut(s) | 686, 971 |
| AjnI | CCWGG | 3 cut(s) | 382, 638, 923 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 735, 767, 1202, 1234 |
| AleI | CACNNNNGTG | 1 cut(s) | 859 |
| AluBI | AGCT | 6 cut(s) | 46, 96, 607, 785, 829, 1311 |
| AluI | AGCT | 6 cut(s) | 46, 96, 607, 785, 829, 1311 |
| Alw21I | GWGCWC | 1 cut(s) | 48 |
| Alw26I | GTCTC | 3 cut(s) | 2, 986, 1031 |
| AlwI | GGATC | 3 cut(s) | 286, 299, 679 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 287 |
| Ama87I | CYCGRG | 1 cut(s) | 1064 |
| AoxI | GGCC | 3 cut(s) | 305, 1249, 1267 |
| ApeKI | GCWGC | 2 cut(s) | 470, 1133 |
| ApoI | RAATTY | 3 cut(s) | 750, 797, 1159 |
| AspS9I | GGNCC | 3 cut(s) | 365, 507, 1249 |
| AsuII | TTCGAA | 1 cut(s) | 493 |
| AvaI | CYCGRG | 1 cut(s) | 1064 |
| AvaII | GGWCC | 2 cut(s) | 365, 507 |
| BalI | TGGCCA | 1 cut(s) | 1269 |
| BamHI | GGATCC | 1 cut(s) | 291 |
| BanI | GGYRCC | 1 cut(s) | 328 |
| BanII | GRGCYC | 1 cut(s) | 48 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1013, 1045 |
| BbsI | GAAGAC | 1 cut(s) | 122 |
| Bbv12I | GWGCWC | 1 cut(s) | 48 |
| BbvI | GCAGC | 2 cut(s) | 457, 1120 |
| BccI | CCATC | 3 cut(s) | 97, 897, 1259 |
| BciT130I | CCWGG | 3 cut(s) | 384, 640, 925 |
| BclI | TGATCA | 1 cut(s) | 448 |
| BcoDI | GTCTC | 3 cut(s) | 2, 986, 1031 |
| BfaI | CTAG | 8 cut(s) | 134, 194, 219, 648, 821, 857, 1277, 1312 |
| BfmI | CTRYAG | 1 cut(s) | 1232 |
| BfuAI | ACCTGC | 2 cut(s) | 272, 1126 |
| BisI | GCNGC | 4 cut(s) | 395, 471, 480, 1134 |
| BlsI | GCNGC | 4 cut(s) | 396, 472, 481, 1135 |
| Bme1390I | CCNGG | 3 cut(s) | 384, 640, 925 |
| Bme18I | GGWCC | 2 cut(s) | 365, 507 |
| BmeT110I | CYCGRG | 1 cut(s) | 1064 |
| BmgBI | CACGTC | 2 cut(s) | 686, 971 |
| BmgT120I | GGNCC | 3 cut(s) | 365, 507, 1249 |
| BmiI | GGNNCC | 5 cut(s) | 293, 330, 366, 645, 922 |
| BmrFI | CCNGG | 3 cut(s) | 384, 640, 925 |
| BmrI | ACTGGG | 1 cut(s) | 676 |
| BmsI | GCATC | 5 cut(s) | 116, 243, 402, 505, 634 |
| BmuI | ACTGGG | 1 cut(s) | 676 |
| BoxI | GACNNNNGTC | 1 cut(s) | 534 |
| BpiI | GAAGAC | 1 cut(s) | 122 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1195 |
| Bpu14I | TTCGAA | 1 cut(s) | 493 |
| BpuEI | CTTGAG | 1 cut(s) | 950 |
| BsaBI | GATNNNNATC | 1 cut(s) | 450 |
| BsaI | GGTCTC | 1 cut(s) | 1031 |
| BsaJI | CCNNGG | 2 cut(s) | 510, 639 |
| BsaWI | WCCGGW | 1 cut(s) | 917 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1088, 1118 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 924 |
| Bse1I | ACTGG | 1 cut(s) | 671 |
| Bse8I | GATNNNNATC | 1 cut(s) | 450 |
| BseBI | CCWGG | 3 cut(s) | 384, 640, 925 |
| BseDI | CCNNGG | 2 cut(s) | 510, 639 |
| BseGI | GGATG | 4 cut(s) | 10, 258, 520, 1073 |
| BseJI | GATNNNNATC | 1 cut(s) | 450 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 924 |
| BseMII | CTCAG | 2 cut(s) | 333, 1170 |
| BseNI | ACTGG | 1 cut(s) | 671 |
| BseRI | GAGGAG | 1 cut(s) | 776 |
| BseXI | GCAGC | 2 cut(s) | 457, 1120 |
| BseYI | CCCAGC | 1 cut(s) | 287 |
| BsgI | GTGCAG | 1 cut(s) | 344 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1157 |
| BshFI | GGCC | 3 cut(s) | 307, 1251, 1269 |
| BshNI | GGYRCC | 1 cut(s) | 328 |
| BsiEI | CGRYCG | 1 cut(s) | 1157 |
| BsiHKAI | GWGCWC | 1 cut(s) | 48 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1064 |
| BsiSI | CCGG | 1 cut(s) | 918 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 924 |
| BsmAI | GTCTC | 3 cut(s) | 2, 986, 1031 |
| BsnI | GGCC | 3 cut(s) | 307, 1251, 1269 |
| Bso31I | GGTCTC | 1 cut(s) | 1031 |
| BsoBI | CYCGRG | 1 cut(s) | 1064 |
| Bsp119I | TTCGAA | 1 cut(s) | 493 |
| Bsp1286I | GDGCHC | 1 cut(s) | 48 |
| Bsp143I | GATC | 4 cut(s) | 291, 448, 671, 946 |
| BspACI | CCGC | 5 cut(s) | 311, 394, 479, 713, 1223 |
| BspANI | GGCC | 3 cut(s) | 307, 1251, 1269 |
| BspCNI | CTCAG | 2 cut(s) | 332, 1171 |
| BspLI | GGNNCC | 5 cut(s) | 293, 330, 366, 645, 922 |
| BspMI | ACCTGC | 2 cut(s) | 272, 1126 |
| BspPI | GGATC | 3 cut(s) | 286, 299, 679 |
| BspT104I | TTCGAA | 1 cut(s) | 493 |
| BspT107I | GGYRCC | 1 cut(s) | 328 |
| BspTNI | GGTCTC | 1 cut(s) | 1031 |
| BsrBI | CCGCTC | 1 cut(s) | 394 |
| BsrI | ACTGG | 1 cut(s) | 671 |
| BssECI | CCNNGG | 2 cut(s) | 510, 639 |
| BssMI | GATC | 4 cut(s) | 291, 448, 671, 946 |
| BssT1I | CCWWGG | 1 cut(s) | 510 |
| Bst2UI | CCWGG | 3 cut(s) | 384, 640, 925 |
| Bst4CI | ACNGT | 3 cut(s) | 63, 465, 593 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 710 |
| BstBI | TTCGAA | 1 cut(s) | 493 |
| BstC8I | GCNNGC | 6 cut(s) | 124, 139, 327, 1253, 1271, 1298 |
| BstDEI | CTNAG | 6 cut(s) | 319, 755, 812, 1179, 1195, 1307 |
| BstF5I | GGATG | 4 cut(s) | 10, 258, 520, 1073 |
| BstKTI | GATC | 4 cut(s) | 294, 451, 674, 949 |
| BstMAI | GTCTC | 3 cut(s) | 2, 986, 1031 |
| BstMBI | GATC | 4 cut(s) | 291, 448, 671, 946 |
| BstMCI | CGRYCG | 1 cut(s) | 1157 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 304, 476, 479, 710 |
| BstNI | CCWGG | 3 cut(s) | 384, 640, 925 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 534 |
| BstSCI | CCNGG | 3 cut(s) | 382, 638, 923 |
| BstSFI | CTRYAG | 1 cut(s) | 1232 |
| BstV1I | GCAGC | 2 cut(s) | 457, 1120 |
| BstV2I | GAAGAC | 1 cut(s) | 122 |
| BstX2I | RGATCY | 1 cut(s) | 291 |
| BstYI | RGATCY | 1 cut(s) | 291 |
| BsuRI | GGCC | 3 cut(s) | 307, 1251, 1269 |
| BtrI | CACGTC | 2 cut(s) | 686, 971 |
| BtsCI | GGATG | 4 cut(s) | 10, 258, 520, 1073 |
| BtsIMutI | CAGTG | 2 cut(s) | 327, 984 |
| BveI | ACCTGC | 2 cut(s) | 272, 1126 |
| Cac8I | GCNNGC | 6 cut(s) | 124, 139, 327, 1253, 1271, 1298 |
| CaiI | CAGNNNCTG | 1 cut(s) | 287 |
| Cfr13I | GGNCC | 3 cut(s) | 365, 507, 1249 |
| CseI | GACGC | 1 cut(s) | 1262 |
| Csp6I | GTAC | 2 cut(s) | 852, 1069 |
| CviAII | CATG | 8 cut(s) | 111, 361, 474, 615, 691, 788, 1014, 1093 |
| CviQI | GTAC | 2 cut(s) | 852, 1069 |
| DdeI | CTNAG | 6 cut(s) | 319, 755, 812, 1179, 1195, 1307 |
| DpnI | GATC | 4 cut(s) | 293, 450, 673, 948 |
| DpnII | GATC | 4 cut(s) | 291, 448, 671, 946 |
| DraI | TTTAAA | 1 cut(s) | 1167 |
| EaeI | YGGCCR | 1 cut(s) | 1267 |
| EciI | GGCGGA | 1 cut(s) | 1238 |
| Ecl136II | GAGCTC | 1 cut(s) | 46 |
| Eco130I | CCWWGG | 1 cut(s) | 510 |
| Eco147I | AGGCCT | 1 cut(s) | 307 |
| Eco24I | GRGCYC | 1 cut(s) | 48 |
| Eco31I | GGTCTC | 1 cut(s) | 1031 |
| Eco47I | GGWCC | 2 cut(s) | 365, 507 |
| Eco53kI | GAGCTC | 1 cut(s) | 46 |
| Eco57I | CTGAAG | 1 cut(s) | 33 |
| Eco88I | CYCGRG | 1 cut(s) | 1064 |
| EcoICRI | GAGCTC | 1 cut(s) | 46 |
| EcoO109I | RGGNCCY | 2 cut(s) | 365, 1249 |
| EcoRI | GAATTC | 2 cut(s) | 750, 1159 |
| EcoRII | CCWGG | 3 cut(s) | 382, 638, 923 |
| EcoT14I | CCWWGG | 1 cut(s) | 510 |
| EcoT22I | ATGCAT | 3 cut(s) | 116, 627, 1094 |
| EcoT38I | GRGCYC | 1 cut(s) | 48 |
| ErhI | CCWWGG | 1 cut(s) | 510 |
| FaeI | CATG | 8 cut(s) | 114, 364, 477, 618, 694, 791, 1017, 1096 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 738, 770 |
| FatI | CATG | 8 cut(s) | 110, 360, 473, 614, 690, 787, 1013, 1092 |
| FauNDI | CATATG | 1 cut(s) | 979 |
| FbaI | TGATCA | 1 cut(s) | 448 |
| FblI | GTMKAC | 1 cut(s) | 190 |
| Fnu4HI | GCNGC | 4 cut(s) | 395, 471, 480, 1134 |
| FokI | GGATG | 4 cut(s) | 17, 265, 527, 1060 |
| FriOI | GRGCYC | 1 cut(s) | 48 |
| Fsp4HI | GCNGC | 4 cut(s) | 395, 471, 480, 1134 |
| FspBI | CTAG | 8 cut(s) | 134, 194, 219, 648, 821, 857, 1277, 1312 |
| GluI | GCNGC | 4 cut(s) | 395, 471, 480, 1134 |
| GsaI | CCCAGC | 1 cut(s) | 291 |
| HaeIII | GGCC | 3 cut(s) | 307, 1251, 1269 |
| HapII | CCGG | 1 cut(s) | 918 |
| HgaI | GACGC | 1 cut(s) | 1262 |
| Hin1II | CATG | 8 cut(s) | 114, 364, 477, 618, 694, 791, 1017, 1096 |
| HincII | GTYRAC | 2 cut(s) | 268, 529 |
| HindII | GTYRAC | 2 cut(s) | 268, 529 |
| HindIII | AAGCTT | 1 cut(s) | 605 |
| HinfI | GANTC | 5 cut(s) | 347, 548, 731, 846, 1058 |
| HpaI | GTTAAC | 1 cut(s) | 268 |
| HpaII | CCGG | 1 cut(s) | 918 |
| Hpy166II | GTNNAC | 6 cut(s) | 19, 191, 268, 529, 854, 1071 |
| Hpy188I | TCNGA | 7 cut(s) | 55, 248, 445, 835, 1078, 1180, 1209 |
| Hpy188III | TCNNGA | 4 cut(s) | 843, 1055, 1064, 1277 |
| Hpy8I | GTNNAC | 6 cut(s) | 19, 191, 268, 529, 854, 1071 |
| HpyAV | CCTTC | 4 cut(s) | 146, 243, 337, 1015 |
| HpyCH4III | ACNGT | 3 cut(s) | 63, 465, 593 |
| HpyCH4IV | ACGT | 3 cut(s) | 659, 685, 970 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 304, 476, 479, 710 |
| HpyF3I | CTNAG | 6 cut(s) | 319, 755, 812, 1179, 1195, 1307 |
| HpySE526I | ACGT | 3 cut(s) | 659, 685, 970 |
| Hsp92II | CATG | 8 cut(s) | 114, 364, 477, 618, 694, 791, 1017, 1096 |
| Ksp22I | TGATCA | 1 cut(s) | 448 |
| KspAI | GTTAAC | 1 cut(s) | 268 |
| Kzo9I | GATC | 4 cut(s) | 291, 448, 671, 946 |
| LmnI | GCTCC | 2 cut(s) | 43, 278 |
| Lsp1109I | GCAGC | 2 cut(s) | 457, 1120 |
| LweI | GCATC | 5 cut(s) | 116, 243, 402, 505, 634 |
| MaeI | CTAG | 8 cut(s) | 134, 194, 219, 648, 821, 857, 1277, 1312 |
| MaeII | ACGT | 3 cut(s) | 659, 685, 970 |
| MaeIII | GTNAC | 4 cut(s) | 35, 720, 1002, 1113 |
| MalI | GATC | 4 cut(s) | 293, 450, 673, 948 |
| MbiI | CCGCTC | 1 cut(s) | 394 |
| MboI | GATC | 4 cut(s) | 291, 448, 671, 946 |
| MboII | GAAGA | 3 cut(s) | 122, 482, 603 |
| MfeI | CAATTG | 2 cut(s) | 455, 1127 |
| MflI | RGATCY | 1 cut(s) | 291 |
| MhlI | GDGCHC | 1 cut(s) | 48 |
| MlsI | TGGCCA | 1 cut(s) | 1269 |
| MluCI | AATT | 8 cut(s) | 56, 197, 455, 750, 797, 964, 1127, 1159 |
| MluNI | TGGCCA | 1 cut(s) | 1269 |
| MmeI | TCCRAC | 2 cut(s) | 642, 1101 |
| Mox20I | TGGCCA | 1 cut(s) | 1269 |
| Mph1103I | ATGCAT | 3 cut(s) | 116, 627, 1094 |
| MscI | TGGCCA | 1 cut(s) | 1269 |
| MseI | TTAA | 5 cut(s) | 267, 540, 963, 1166, 1188 |
| MslI | CAYNNNNRTG | 2 cut(s) | 859, 1097 |
| Msp20I | TGGCCA | 1 cut(s) | 1269 |
| MspI | CCGG | 1 cut(s) | 918 |
| MspR9I | CCNGG | 3 cut(s) | 384, 640, 925 |
| MunI | CAATTG | 2 cut(s) | 455, 1127 |
| MvaI | CCWGG | 3 cut(s) | 384, 640, 925 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 304, 476, 479, 710 |
| NdeI | CATATG | 1 cut(s) | 979 |
| NdeII | GATC | 4 cut(s) | 291, 448, 671, 946 |
| NlaIII | CATG | 8 cut(s) | 114, 364, 477, 618, 694, 791, 1017, 1096 |
| NlaIV | GGNNCC | 5 cut(s) | 293, 330, 366, 645, 922 |
| NsiI | ATGCAT | 3 cut(s) | 116, 627, 1094 |
| NspV | TTCGAA | 1 cut(s) | 493 |
| OliI | CACNNNNGTG | 1 cut(s) | 859 |
| PaeR7I | CTCGAG | 1 cut(s) | 1064 |
| PaqCI | CACCTGC | 1 cut(s) | 272 |
| PceI | AGGCCT | 1 cut(s) | 307 |
| PfeI | GAWTC | 5 cut(s) | 347, 548, 731, 846, 1058 |
| PkrI | GCNGC | 4 cut(s) | 396, 472, 481, 1135 |
| PpuMI | RGGWCCY | 1 cut(s) | 365 |
| PshAI | GACNNNNGTC | 1 cut(s) | 534 |
| Psp124BI | GAGCTC | 1 cut(s) | 48 |
| Psp1406I | AACGTT | 1 cut(s) | 659 |
| Psp5II | RGGWCCY | 1 cut(s) | 365 |
| Psp6I | CCWGG | 3 cut(s) | 382, 638, 923 |
| PspFI | CCCAGC | 1 cut(s) | 287 |
| PspGI | CCWGG | 3 cut(s) | 382, 638, 923 |
| PspN4I | GGNNCC | 5 cut(s) | 293, 330, 366, 645, 922 |
| PspPI | GGNCC | 3 cut(s) | 365, 507, 1249 |
| PspPPI | RGGWCCY | 1 cut(s) | 365 |
| PstNI | CAGNNNCTG | 1 cut(s) | 287 |
| PsuI | RGATCY | 1 cut(s) | 291 |
| RsaI | GTAC | 2 cut(s) | 853, 1070 |
| RsaNI | GTAC | 2 cut(s) | 852, 1069 |
| RseI | CAYNNNNRTG | 2 cut(s) | 859, 1097 |
| SacI | GAGCTC | 1 cut(s) | 48 |
| SaqAI | TTAA | 5 cut(s) | 267, 540, 963, 1166, 1188 |
| SatI | GCNGC | 4 cut(s) | 395, 471, 480, 1134 |
| Sau3AI | GATC | 4 cut(s) | 291, 448, 671, 946 |
| Sau96I | GGNCC | 3 cut(s) | 365, 507, 1249 |
| ScrFI | CCNGG | 3 cut(s) | 384, 640, 925 |
| SduI | GDGCHC | 1 cut(s) | 48 |
| SfaNI | GCATC | 5 cut(s) | 116, 243, 402, 505, 634 |
| SfcI | CTRYAG | 1 cut(s) | 1232 |
| Sfr274I | CTCGAG | 1 cut(s) | 1064 |
| SfuI | TTCGAA | 1 cut(s) | 493 |
| SinI | GGWCC | 2 cut(s) | 365, 507 |
| SlaI | CTCGAG | 1 cut(s) | 1064 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 859, 1097 |
| SmlI | CTYRAG | 2 cut(s) | 929, 1064 |
| SmoI | CTYRAG | 2 cut(s) | 929, 1064 |
| Sse9I | AATT | 8 cut(s) | 56, 197, 455, 750, 797, 964, 1127, 1159 |
| SseBI | AGGCCT | 1 cut(s) | 307 |
| SsiI | CCGC | 5 cut(s) | 311, 394, 479, 713, 1223 |
| SspMI | CTAG | 8 cut(s) | 134, 194, 219, 648, 821, 857, 1277, 1312 |
| SstI | GAGCTC | 1 cut(s) | 48 |
| StuI | AGGCCT | 1 cut(s) | 307 |
| StyD4I | CCNGG | 3 cut(s) | 382, 638, 923 |
| StyI | CCWWGG | 1 cut(s) | 510 |
| TaaI | ACNGT | 3 cut(s) | 63, 465, 593 |
| TaiI | ACGT | 3 cut(s) | 662, 688, 973 |
| TaqI | TCGA | 3 cut(s) | 493, 1065, 1157 |
| TaqII | GACCGA | 1 cut(s) | 1143 |
| TasI | AATT | 8 cut(s) | 56, 197, 455, 750, 797, 964, 1127, 1159 |
| TatI | WGTACW | 2 cut(s) | 851, 1068 |
| TauI | GCSGC | 2 cut(s) | 397, 482 |
| TfiI | GAWTC | 5 cut(s) | 347, 548, 731, 846, 1058 |
| Tru1I | TTAA | 5 cut(s) | 267, 540, 963, 1166, 1188 |
| Tru9I | TTAA | 5 cut(s) | 267, 540, 963, 1166, 1188 |
| TscAI | CASTG | 2 cut(s) | 327, 991 |
| TseI | GCWGC | 2 cut(s) | 470, 1133 |
| TspDTI | ATGAA | 5 cut(s) | 165, 474, 603, 617, 1002 |
| TspGWI | ACGGA | 1 cut(s) | 1021 |
| TspRI | CASTG | 2 cut(s) | 327, 991 |
| VpaK11BI | GGWCC | 2 cut(s) | 365, 507 |
| XapI | RAATTY | 3 cut(s) | 750, 797, 1159 |
| XbaI | TCTAGA | 1 cut(s) | 1276 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 29, 663 |
| XhoI | CTCGAG | 1 cut(s) | 1064 |
| XmiI | GTMKAC | 1 cut(s) | 190 |
| XspI | CTAG | 8 cut(s) | 134, 194, 219, 648, 821, 857, 1277, 1312 |
| Zsp2I | ATGCAT | 3 cut(s) | 116, 627, 1094 |