Rh2AG641600

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
86427210 .. 86429428
2219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG641600.1

Sequence Viewer

Length: 1314 bp
ATGGATGAGACTGAAGTAAACCATTTAGTAAATGGTTACAGGGAGCTCATTTCTGAATTACTGTCTGTAAAAAAATCTGGCACTTTCTATCACAGCTTATTGATGGCATCATGCATTGGGGCAGGCAGTCTTCTAGCCTGCATACTGAATGAAGGGGTGCATACTATTGAAGTTGAGTGTGTAAAGGGTCTACTAGAATTGTTCAAAAAATGCTATTCTAGTCCTTACCCTCCTTTAGTCCATTTCGGAAGGATGCTTGGAGTTGTTAACACTATGGGAGCAGGTGCTGGGATCCTGCTTGACAGGCCTCCGCTAACCTCAGTGCAGGCACCTTTTGAACAGAAGGAATCTGGCTATGTCATGGGTCCTCTACTCTCAAATCCTGGTTGTGAGCGGCATTTGACATCGTTGATGCAGGATATATTTCTTGTTGCACAGAAATCTGATGATCATCAATTGCAACAGTATGCTGCATGGGCGGCTTCATTTCTTCGAAATCATTTGTGGTCCAAGGATGCTGTCAATGTTGACAATAGTCTTAATACTGATTCAGGTGGTTCAAAATCTGTTTCCCAAAGTTTTGCAGATGACAGTTTAGTTATGAAGCTTTCTTCATGGCTAATGCATCTCAACTTTACCAGGGTTCCTAGATTGCCAACGTTGGACTGGGGATCAATCATTAGACGTGGCATGAGATATGAGGCACAGGTTGCGGAGATGTTACCAACAGAATCATCATTCCAAAAAGGAATTCTTAGGGAGGAGTGTCTAAAGTTCTCATTAGCTCATGCAAATAAATTTTACCAACTCCTAAGTTTCCTAGATGAGCTATCTGACTTGTCCAGATTCAGTACACTAGAGTGGAAACTGCAATCTTGTGTTCTCAACCATCTTGCCGACCTCATAAAAGTATTCTCCGGTTCCAGGCTTGAGAAACTATTTGATGATCTCTGCAACTACTTTAATTCACGTCAATCATATGACACTGATGAGACAAGTTTGTTACGGATTTCATGCTGGAAGGGTCTCTACAAGTGTTTAGACGAGGCTTCTCTTGATTCTCTCGAGTACACATCCGACATAGAAAAATGCATGGAGGTGCTGTTTTCCTTGTTACCTGCAAGGCAATTGGCTGCTGTGGTAGGAGTAGGTCGGTCGAATTCTTTAAAGGAGTGGTCTGAGGCAGTTAAATGCTTAGGAAAGGCTCGGAAAAGTTGGTTGGCGGATTTCCTACAGGTTTCACAGGAGGGCCTGCAACAAAGAGATGGCCAGCGTCTAGATGTTCTAAAAAAATGCAAGCCAAATCTAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

437

Amino Acids

49.06

Weight (kDa)

6.1

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 272
Acc36I ACCTGC 2 cut(s) 272, 1126
AccB1I GGYRCC 1 cut(s) 328
AccBSI CCGCTC 1 cut(s) 394
AccI GTMKAC 1 cut(s) 190
AciI CCGC 5 cut(s) 311, 394, 479, 713, 1223
AclI AACGTT 1 cut(s) 659
AclWI GGATC 3 cut(s) 286, 299, 679
AcoI YGGCCR 1 cut(s) 1267
AcsI RAATTY 3 cut(s) 750, 797, 1159
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 2 cut(s) 853, 1070
AfiI CCNNNNNNNGG 1 cut(s) 924
AgsI TTSAA 4 cut(s) 170, 205, 338, 561
AjiI CACGTC 2 cut(s) 686, 971
AjnI CCWGG 3 cut(s) 382, 638, 923
AjuI GAANNNNNNNTTGG 4 cut(s) 735, 767, 1202, 1234
AleI CACNNNNGTG 1 cut(s) 859
AluBI AGCT 6 cut(s) 46, 96, 607, 785, 829, 1311
AluI AGCT 6 cut(s) 46, 96, 607, 785, 829, 1311
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 3 cut(s) 2, 986, 1031
AlwI GGATC 3 cut(s) 286, 299, 679
AlwNI CAGNNNCTG 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 1064
AoxI GGCC 3 cut(s) 305, 1249, 1267
ApeKI GCWGC 2 cut(s) 470, 1133
ApoI RAATTY 3 cut(s) 750, 797, 1159
AspS9I GGNCC 3 cut(s) 365, 507, 1249
AsuII TTCGAA 1 cut(s) 493
AvaI CYCGRG 1 cut(s) 1064
AvaII GGWCC 2 cut(s) 365, 507
BalI TGGCCA 1 cut(s) 1269
BamHI GGATCC 1 cut(s) 291
BanI GGYRCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 48
BarI GAAGNNNNNNTAC 2 cut(s) 1013, 1045
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 2 cut(s) 457, 1120
BccI CCATC 3 cut(s) 97, 897, 1259
BciT130I CCWGG 3 cut(s) 384, 640, 925
BclI TGATCA 1 cut(s) 448
BcoDI GTCTC 3 cut(s) 2, 986, 1031
BfaI CTAG 8 cut(s) 134, 194, 219, 648, 821, 857, 1277, 1312
BfmI CTRYAG 1 cut(s) 1232
BfuAI ACCTGC 2 cut(s) 272, 1126
BisI GCNGC 4 cut(s) 395, 471, 480, 1134
BlsI GCNGC 4 cut(s) 396, 472, 481, 1135
Bme1390I CCNGG 3 cut(s) 384, 640, 925
Bme18I GGWCC 2 cut(s) 365, 507
BmeT110I CYCGRG 1 cut(s) 1064
BmgBI CACGTC 2 cut(s) 686, 971
BmgT120I GGNCC 3 cut(s) 365, 507, 1249
BmiI GGNNCC 5 cut(s) 293, 330, 366, 645, 922
BmrFI CCNGG 3 cut(s) 384, 640, 925
BmrI ACTGGG 1 cut(s) 676
BmsI GCATC 5 cut(s) 116, 243, 402, 505, 634
BmuI ACTGGG 1 cut(s) 676
BoxI GACNNNNGTC 1 cut(s) 534
BpiI GAAGAC 1 cut(s) 122
Bpu10I CCTNAGC 1 cut(s) 1195
Bpu14I TTCGAA 1 cut(s) 493
BpuEI CTTGAG 1 cut(s) 950
BsaBI GATNNNNATC 1 cut(s) 450
BsaI GGTCTC 1 cut(s) 1031
BsaJI CCNNGG 2 cut(s) 510, 639
BsaWI WCCGGW 1 cut(s) 917
BsaXI ACNNNNNCTCC 2 cut(s) 1088, 1118
Bsc4I CCNNNNNNNGG 1 cut(s) 924
Bse1I ACTGG 1 cut(s) 671
Bse8I GATNNNNATC 1 cut(s) 450
BseBI CCWGG 3 cut(s) 384, 640, 925
BseDI CCNNGG 2 cut(s) 510, 639
BseGI GGATG 4 cut(s) 10, 258, 520, 1073
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 1 cut(s) 924
BseMII CTCAG 2 cut(s) 333, 1170
BseNI ACTGG 1 cut(s) 671
BseRI GAGGAG 1 cut(s) 776
BseXI GCAGC 2 cut(s) 457, 1120
BseYI CCCAGC 1 cut(s) 287
BsgI GTGCAG 1 cut(s) 344
Bsh1285I CGRYCG 1 cut(s) 1157
BshFI GGCC 3 cut(s) 307, 1251, 1269
BshNI GGYRCC 1 cut(s) 328
BsiEI CGRYCG 1 cut(s) 1157
BsiHKAI GWGCWC 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 1064
BsiSI CCGG 1 cut(s) 918
BslI CCNNNNNNNGG 1 cut(s) 924
BsmAI GTCTC 3 cut(s) 2, 986, 1031
BsnI GGCC 3 cut(s) 307, 1251, 1269
Bso31I GGTCTC 1 cut(s) 1031
BsoBI CYCGRG 1 cut(s) 1064
Bsp119I TTCGAA 1 cut(s) 493
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 4 cut(s) 291, 448, 671, 946
BspACI CCGC 5 cut(s) 311, 394, 479, 713, 1223
BspANI GGCC 3 cut(s) 307, 1251, 1269
BspCNI CTCAG 2 cut(s) 332, 1171
BspLI GGNNCC 5 cut(s) 293, 330, 366, 645, 922
BspMI ACCTGC 2 cut(s) 272, 1126
BspPI GGATC 3 cut(s) 286, 299, 679
BspT104I TTCGAA 1 cut(s) 493
BspT107I GGYRCC 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 1031
BsrBI CCGCTC 1 cut(s) 394
BsrI ACTGG 1 cut(s) 671
BssECI CCNNGG 2 cut(s) 510, 639
BssMI GATC 4 cut(s) 291, 448, 671, 946
BssT1I CCWWGG 1 cut(s) 510
Bst2UI CCWGG 3 cut(s) 384, 640, 925
Bst4CI ACNGT 3 cut(s) 63, 465, 593
BstAPI GCANNNNNTGC 1 cut(s) 710
BstBI TTCGAA 1 cut(s) 493
BstC8I GCNNGC 6 cut(s) 124, 139, 327, 1253, 1271, 1298
BstDEI CTNAG 6 cut(s) 319, 755, 812, 1179, 1195, 1307
BstF5I GGATG 4 cut(s) 10, 258, 520, 1073
BstKTI GATC 4 cut(s) 294, 451, 674, 949
BstMAI GTCTC 3 cut(s) 2, 986, 1031
BstMBI GATC 4 cut(s) 291, 448, 671, 946
BstMCI CGRYCG 1 cut(s) 1157
BstMWI GCNNNNNNNGC 4 cut(s) 304, 476, 479, 710
BstNI CCWGG 3 cut(s) 384, 640, 925
BstPAI GACNNNNGTC 1 cut(s) 534
BstSCI CCNGG 3 cut(s) 382, 638, 923
BstSFI CTRYAG 1 cut(s) 1232
BstV1I GCAGC 2 cut(s) 457, 1120
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
BsuRI GGCC 3 cut(s) 307, 1251, 1269
BtrI CACGTC 2 cut(s) 686, 971
BtsCI GGATG 4 cut(s) 10, 258, 520, 1073
BtsIMutI CAGTG 2 cut(s) 327, 984
BveI ACCTGC 2 cut(s) 272, 1126
Cac8I GCNNGC 6 cut(s) 124, 139, 327, 1253, 1271, 1298
CaiI CAGNNNCTG 1 cut(s) 287
Cfr13I GGNCC 3 cut(s) 365, 507, 1249
CseI GACGC 1 cut(s) 1262
Csp6I GTAC 2 cut(s) 852, 1069
CviAII CATG 8 cut(s) 111, 361, 474, 615, 691, 788, 1014, 1093
CviQI GTAC 2 cut(s) 852, 1069
DdeI CTNAG 6 cut(s) 319, 755, 812, 1179, 1195, 1307
DpnI GATC 4 cut(s) 293, 450, 673, 948
DpnII GATC 4 cut(s) 291, 448, 671, 946
DraI TTTAAA 1 cut(s) 1167
EaeI YGGCCR 1 cut(s) 1267
EciI GGCGGA 1 cut(s) 1238
Ecl136II GAGCTC 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 510
Eco147I AGGCCT 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 48
Eco31I GGTCTC 1 cut(s) 1031
Eco47I GGWCC 2 cut(s) 365, 507
Eco53kI GAGCTC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 1064
EcoICRI GAGCTC 1 cut(s) 46
EcoO109I RGGNCCY 2 cut(s) 365, 1249
EcoRI GAATTC 2 cut(s) 750, 1159
EcoRII CCWGG 3 cut(s) 382, 638, 923
EcoT14I CCWWGG 1 cut(s) 510
EcoT22I ATGCAT 3 cut(s) 116, 627, 1094
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 510
FaeI CATG 8 cut(s) 114, 364, 477, 618, 694, 791, 1017, 1096
FalI AAGNNNNNCTT 2 cut(s) 738, 770
FatI CATG 8 cut(s) 110, 360, 473, 614, 690, 787, 1013, 1092
FauNDI CATATG 1 cut(s) 979
FbaI TGATCA 1 cut(s) 448
FblI GTMKAC 1 cut(s) 190
Fnu4HI GCNGC 4 cut(s) 395, 471, 480, 1134
FokI GGATG 4 cut(s) 17, 265, 527, 1060
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 4 cut(s) 395, 471, 480, 1134
FspBI CTAG 8 cut(s) 134, 194, 219, 648, 821, 857, 1277, 1312
GluI GCNGC 4 cut(s) 395, 471, 480, 1134
GsaI CCCAGC 1 cut(s) 291
HaeIII GGCC 3 cut(s) 307, 1251, 1269
HapII CCGG 1 cut(s) 918
HgaI GACGC 1 cut(s) 1262
Hin1II CATG 8 cut(s) 114, 364, 477, 618, 694, 791, 1017, 1096
HincII GTYRAC 2 cut(s) 268, 529
HindII GTYRAC 2 cut(s) 268, 529
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 5 cut(s) 347, 548, 731, 846, 1058
HpaI GTTAAC 1 cut(s) 268
HpaII CCGG 1 cut(s) 918
Hpy166II GTNNAC 6 cut(s) 19, 191, 268, 529, 854, 1071
Hpy188I TCNGA 7 cut(s) 55, 248, 445, 835, 1078, 1180, 1209
Hpy188III TCNNGA 4 cut(s) 843, 1055, 1064, 1277
Hpy8I GTNNAC 6 cut(s) 19, 191, 268, 529, 854, 1071
HpyAV CCTTC 4 cut(s) 146, 243, 337, 1015
HpyCH4III ACNGT 3 cut(s) 63, 465, 593
HpyCH4IV ACGT 3 cut(s) 659, 685, 970
HpyF10VI GCNNNNNNNGC 4 cut(s) 304, 476, 479, 710
HpyF3I CTNAG 6 cut(s) 319, 755, 812, 1179, 1195, 1307
HpySE526I ACGT 3 cut(s) 659, 685, 970
Hsp92II CATG 8 cut(s) 114, 364, 477, 618, 694, 791, 1017, 1096
Ksp22I TGATCA 1 cut(s) 448
KspAI GTTAAC 1 cut(s) 268
Kzo9I GATC 4 cut(s) 291, 448, 671, 946
LmnI GCTCC 2 cut(s) 43, 278
Lsp1109I GCAGC 2 cut(s) 457, 1120
LweI GCATC 5 cut(s) 116, 243, 402, 505, 634
MaeI CTAG 8 cut(s) 134, 194, 219, 648, 821, 857, 1277, 1312
MaeII ACGT 3 cut(s) 659, 685, 970
MaeIII GTNAC 4 cut(s) 35, 720, 1002, 1113
MalI GATC 4 cut(s) 293, 450, 673, 948
MbiI CCGCTC 1 cut(s) 394
MboI GATC 4 cut(s) 291, 448, 671, 946
MboII GAAGA 3 cut(s) 122, 482, 603
MfeI CAATTG 2 cut(s) 455, 1127
MflI RGATCY 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 48
MlsI TGGCCA 1 cut(s) 1269
MluCI AATT 8 cut(s) 56, 197, 455, 750, 797, 964, 1127, 1159
MluNI TGGCCA 1 cut(s) 1269
MmeI TCCRAC 2 cut(s) 642, 1101
Mox20I TGGCCA 1 cut(s) 1269
Mph1103I ATGCAT 3 cut(s) 116, 627, 1094
MscI TGGCCA 1 cut(s) 1269
MseI TTAA 5 cut(s) 267, 540, 963, 1166, 1188
MslI CAYNNNNRTG 2 cut(s) 859, 1097
Msp20I TGGCCA 1 cut(s) 1269
MspI CCGG 1 cut(s) 918
MspR9I CCNGG 3 cut(s) 384, 640, 925
MunI CAATTG 2 cut(s) 455, 1127
MvaI CCWGG 3 cut(s) 384, 640, 925
MwoI GCNNNNNNNGC 4 cut(s) 304, 476, 479, 710
NdeI CATATG 1 cut(s) 979
NdeII GATC 4 cut(s) 291, 448, 671, 946
NlaIII CATG 8 cut(s) 114, 364, 477, 618, 694, 791, 1017, 1096
NlaIV GGNNCC 5 cut(s) 293, 330, 366, 645, 922
NsiI ATGCAT 3 cut(s) 116, 627, 1094
NspV TTCGAA 1 cut(s) 493
OliI CACNNNNGTG 1 cut(s) 859
PaeR7I CTCGAG 1 cut(s) 1064
PaqCI CACCTGC 1 cut(s) 272
PceI AGGCCT 1 cut(s) 307
PfeI GAWTC 5 cut(s) 347, 548, 731, 846, 1058
PkrI GCNGC 4 cut(s) 396, 472, 481, 1135
PpuMI RGGWCCY 1 cut(s) 365
PshAI GACNNNNGTC 1 cut(s) 534
Psp124BI GAGCTC 1 cut(s) 48
Psp1406I AACGTT 1 cut(s) 659
Psp5II RGGWCCY 1 cut(s) 365
Psp6I CCWGG 3 cut(s) 382, 638, 923
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 3 cut(s) 382, 638, 923
PspN4I GGNNCC 5 cut(s) 293, 330, 366, 645, 922
PspPI GGNCC 3 cut(s) 365, 507, 1249
PspPPI RGGWCCY 1 cut(s) 365
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 291
RsaI GTAC 2 cut(s) 853, 1070
RsaNI GTAC 2 cut(s) 852, 1069
RseI CAYNNNNRTG 2 cut(s) 859, 1097
SacI GAGCTC 1 cut(s) 48
SaqAI TTAA 5 cut(s) 267, 540, 963, 1166, 1188
SatI GCNGC 4 cut(s) 395, 471, 480, 1134
Sau3AI GATC 4 cut(s) 291, 448, 671, 946
Sau96I GGNCC 3 cut(s) 365, 507, 1249
ScrFI CCNGG 3 cut(s) 384, 640, 925
SduI GDGCHC 1 cut(s) 48
SfaNI GCATC 5 cut(s) 116, 243, 402, 505, 634
SfcI CTRYAG 1 cut(s) 1232
Sfr274I CTCGAG 1 cut(s) 1064
SfuI TTCGAA 1 cut(s) 493
SinI GGWCC 2 cut(s) 365, 507
SlaI CTCGAG 1 cut(s) 1064
SmiMI CAYNNNNRTG 2 cut(s) 859, 1097
SmlI CTYRAG 2 cut(s) 929, 1064
SmoI CTYRAG 2 cut(s) 929, 1064
Sse9I AATT 8 cut(s) 56, 197, 455, 750, 797, 964, 1127, 1159
SseBI AGGCCT 1 cut(s) 307
SsiI CCGC 5 cut(s) 311, 394, 479, 713, 1223
SspMI CTAG 8 cut(s) 134, 194, 219, 648, 821, 857, 1277, 1312
SstI GAGCTC 1 cut(s) 48
StuI AGGCCT 1 cut(s) 307
StyD4I CCNGG 3 cut(s) 382, 638, 923
StyI CCWWGG 1 cut(s) 510
TaaI ACNGT 3 cut(s) 63, 465, 593
TaiI ACGT 3 cut(s) 662, 688, 973
TaqI TCGA 3 cut(s) 493, 1065, 1157
TaqII GACCGA 1 cut(s) 1143
TasI AATT 8 cut(s) 56, 197, 455, 750, 797, 964, 1127, 1159
TatI WGTACW 2 cut(s) 851, 1068
TauI GCSGC 2 cut(s) 397, 482
TfiI GAWTC 5 cut(s) 347, 548, 731, 846, 1058
Tru1I TTAA 5 cut(s) 267, 540, 963, 1166, 1188
Tru9I TTAA 5 cut(s) 267, 540, 963, 1166, 1188
TscAI CASTG 2 cut(s) 327, 991
TseI GCWGC 2 cut(s) 470, 1133
TspDTI ATGAA 5 cut(s) 165, 474, 603, 617, 1002
TspGWI ACGGA 1 cut(s) 1021
TspRI CASTG 2 cut(s) 327, 991
VpaK11BI GGWCC 2 cut(s) 365, 507
XapI RAATTY 3 cut(s) 750, 797, 1159
XbaI TCTAGA 1 cut(s) 1276
XcmI CCANNNNNNNNNTGG 2 cut(s) 29, 663
XhoI CTCGAG 1 cut(s) 1064
XmiI GTMKAC 1 cut(s) 190
XspI CTAG 8 cut(s) 134, 194, 219, 648, 821, 857, 1277, 1312
Zsp2I ATGCAT 3 cut(s) 116, 627, 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.