Rmu_sc0026490.1_g000001

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026490.1
OG0001894
Physical Location & Seq
Reverse (-)
1 .. 1610
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026490.1_g000001.1.cds

Sequence Viewer

Length: 958 bp
atggactcctaccctcccctactggagaaaacccgggttccccaaccttccctccaaaaatacgccgtgatttcaaacttctcgaagctccgatccgccccgaactacctagactccgactccgaacccggaagagacgccatttcccagtgcctcccctccacttcccccgccgtcgtcgatcaatcggttcgcgagctctgcggcatcgtcgctgacgacggcccccaaattgatgtccaccgcggcttgctggagctcccgtccgcgctcgaaggatctgattcgaagttcgtcgacctgtttgtgaaaggtttggggtttttggtccggttagggtttcagaagagcaatggcaagtggtctttcagcaacacagagtctcaccccttgattaaggttctttcatgccggagcgatgtggaggctgaacttgtgcagcaagttttactgtttatggcacagaataggcggttgggaatggtggaagtattatcatcaatggcgtctctttgttgctcaattcctcttgatgcaatgcctgtgcttaagtcgttgacagaatgtcttcagtacgttccgcacaagagttcagaggatttccggaatttcatatatttagcagaatgtatggtggatgcatatacagtggttttgaggcatttagctggaactagattgctgattgctgaggctcaactctgtggtttggaactgtttgagaaaattatatcgatttgcacaactggtcataagcactccggttcaattgagcctctagttgaactgtccaagaacttattgttgtcccagaaagataatgggttaccttatgcaccaaagatatcatcagctatgctttcgttatttattatccttgtccaatcagagcttgagcatgagcaactttccacattgaaacttctgcaccttctcttgaagtggaagtatggaaacg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3730

Protein Analysis

319

Amino Acids

35.33

Weight (kDa)

5.93

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 297
AccII CGCG 3 cut(s) 195, 246, 269
AccIII TCCGGA 1 cut(s) 603
AciI CCGC 8 cut(s) 96, 171, 204, 244, 246, 267, 472, 581
AclWI GGATC 2 cut(s) 87, 286
AcsI RAATTY 1 cut(s) 607
AcuI CTGAAG 1 cut(s) 554
AcyI GRCGYC 2 cut(s) 138, 506
AfaI GTAC 1 cut(s) 575
AflII CTTAAG 1 cut(s) 548
AgsI TTSAA 5 cut(s) 75, 768, 785, 919, 940
AhdI GACNNNNNGTC 1 cut(s) 564
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AluBI AGCT 6 cut(s) 88, 199, 259, 668, 854, 892
AluI AGCT 6 cut(s) 88, 199, 259, 668, 854, 892
Alw21I GWGCWC 2 cut(s) 201, 261
Alw26I GTCTC 3 cut(s) 129, 387, 513
AlwI GGATC 2 cut(s) 87, 286
Ama87I CYCGRG 1 cut(s) 33
Aor13HI TCCGGA 1 cut(s) 603
AoxI GGCC 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 439
ApoI RAATTY 1 cut(s) 607
Asp700I GAANNNNTTC 1 cut(s) 567
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 2 cut(s) 224, 328
AsuC2I CCSGG 3 cut(s) 34, 35, 129
AsuHPI GGTGA 1 cut(s) 377
AsuII TTCGAA 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 1 cut(s) 328
BanII GRGCYC 2 cut(s) 201, 261
BbsI GAAGAC 1 cut(s) 560
Bbv12I GWGCWC 2 cut(s) 201, 261
BbvCI CCTCAGC 1 cut(s) 690
BbvI GCAGC 1 cut(s) 451
BceAI ACGGC 3 cut(s) 50, 158, 238
BcnI CCSGG 3 cut(s) 34, 35, 129
BcoDI GTCTC 3 cut(s) 129, 387, 513
BfaI CTAG 3 cut(s) 110, 675, 779
BfrI CTTAAG 1 cut(s) 548
BisI GCNGC 3 cut(s) 205, 247, 440
BlsI GCNGC 3 cut(s) 206, 248, 441
Bme1390I CCNGG 3 cut(s) 34, 35, 129
Bme18I GGWCC 1 cut(s) 328
BmeRI GACNNNNNGTC 1 cut(s) 564
BmeT110I CYCGRG 1 cut(s) 33
BmgT120I GGNCC 2 cut(s) 224, 328
BmiI GGNNCC 2 cut(s) 39, 226
BmrFI CCNGG 3 cut(s) 34, 35, 129
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 3 cut(s) 216, 523, 628
BmuI ACTGGG 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 560
BpmI CTGGAG 2 cut(s) 44, 275
Bpu10I CCTNAGC 1 cut(s) 690
Bpu14I TTCGAA 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 914
BpuMI CCSGG 3 cut(s) 34, 35, 129
Bsa29I ATCGAT 1 cut(s) 734
BsaHI GRCGYC 2 cut(s) 138, 506
BsaJI CCNNGG 2 cut(s) 33, 244
BsaWI WCCGGW 3 cut(s) 330, 603, 761
BsaXI ACNNNNNCTCC 8 cut(s) 36, 66, 98, 104, 128, 134, 248, 278
Bse1I ACTGG 3 cut(s) 27, 148, 751
Bse3DI GCAATG 2 cut(s) 358, 543
BseAI TCCGGA 1 cut(s) 603
BseCI ATCGAT 1 cut(s) 734
BseDI CCNNGG 2 cut(s) 33, 244
BseGI GGATG 1 cut(s) 643
BseMI GCAATG 2 cut(s) 358, 543
BseMII CTCAG 1 cut(s) 681
BseNI ACTGG 3 cut(s) 27, 148, 751
BseXI GCAGC 1 cut(s) 451
BsgI GTGCAG 2 cut(s) 458, 911
Bsh1236I CGCG 3 cut(s) 195, 246, 269
BshFI GGCC 1 cut(s) 225
BshVI ATCGAT 1 cut(s) 734
BsiHKAI GWGCWC 2 cut(s) 201, 261
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 6 cut(s) 34, 129, 331, 412, 604, 762
BslFI GGGAC 1 cut(s) 793
BsmAI GTCTC 3 cut(s) 129, 387, 513
BsmBI CGTCTC 2 cut(s) 129, 513
BsmFI GGGAC 1 cut(s) 793
BsnI GGCC 1 cut(s) 225
BsoBI CYCGRG 1 cut(s) 33
Bsp119I TTCGAA 1 cut(s) 287
Bsp1286I GDGCHC 2 cut(s) 201, 261
Bsp13I TCCGGA 1 cut(s) 603
Bsp143I GATC 3 cut(s) 92, 181, 278
Bsp68I TCGCGA 1 cut(s) 195
BspACI CCGC 8 cut(s) 96, 171, 204, 244, 246, 267, 472, 581
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 1 cut(s) 682
BspDI ATCGAT 1 cut(s) 734
BspEI TCCGGA 1 cut(s) 603
BspFNI CGCG 3 cut(s) 195, 246, 269
BspLI GGNNCC 2 cut(s) 39, 226
BspPI GGATC 2 cut(s) 87, 286
BspQI GCTCTTC 1 cut(s) 341
BspT104I TTCGAA 1 cut(s) 287
BspTI CTTAAG 1 cut(s) 548
BsrDI GCAATG 2 cut(s) 358, 543
BsrI ACTGG 3 cut(s) 27, 148, 751
BssECI CCNNGG 2 cut(s) 33, 244
BssMI GATC 3 cut(s) 92, 181, 278
BssNI GRCGYC 2 cut(s) 138, 506
Bst4CI ACNGT 4 cut(s) 453, 649, 717, 789
Bst6I CTCTTC 2 cut(s) 127, 341
BstACI GRCGYC 2 cut(s) 138, 506
BstAFI CTTAAG 1 cut(s) 548
BstBI TTCGAA 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 197, 251
BstDEI CTNAG 1 cut(s) 690
BstDSI CCRYGG 1 cut(s) 244
BstEII GGTNACC 1 cut(s) 825
BstF5I GGATG 1 cut(s) 643
BstFNI CGCG 3 cut(s) 195, 246, 269
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 3 cut(s) 95, 184, 281
BstMAI GTCTC 3 cut(s) 129, 387, 513
BstMBI GATC 3 cut(s) 92, 181, 278
BstMWI GCNNNNNNNGC 1 cut(s) 201
BstPI GGTNACC 1 cut(s) 825
BstSCI CCNGG 3 cut(s) 32, 33, 127
BstUI CGCG 3 cut(s) 195, 246, 269
BstV1I GCAGC 1 cut(s) 451
BstV2I GAAGAC 1 cut(s) 560
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
Bsu15I ATCGAT 1 cut(s) 734
BsuRI GGCC 1 cut(s) 225
BsuTUI ATCGAT 1 cut(s) 734
BtgI CCRYGG 1 cut(s) 244
BtgZI GCGATG 1 cut(s) 432
BtsCI GGATG 1 cut(s) 643
BtsIMutI CAGTG 2 cut(s) 155, 654
BtuMI TCGCGA 1 cut(s) 195
Cac8I GCNNGC 2 cut(s) 197, 251
CfoI GCGC 1 cut(s) 271
Cfr13I GGNCC 2 cut(s) 224, 328
Cfr42I CCGCGG 1 cut(s) 247
Cfr9I CCCGGG 1 cut(s) 33
ClaI ATCGAT 1 cut(s) 734
CseI GACGC 2 cut(s) 146, 495
Csp6I GTAC 1 cut(s) 574
CviAII CATG 2 cut(s) 408, 899
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 1 cut(s) 690
DpnI GATC 3 cut(s) 94, 183, 280
DpnII GATC 3 cut(s) 92, 181, 278
DriI GACNNNNNGTC 1 cut(s) 564
Eam1104I CTCTTC 2 cut(s) 127, 341
Eam1105I GACNNNNNGTC 1 cut(s) 564
EarI CTCTTC 2 cut(s) 127, 341
EciI GGCGGA 1 cut(s) 85
Ecl136II GAGCTC 2 cut(s) 199, 259
Eco24I GRGCYC 2 cut(s) 201, 261
Eco32I GATATC 1 cut(s) 846
Eco47I GGWCC 1 cut(s) 328
Eco53kI GAGCTC 2 cut(s) 199, 259
Eco57I CTGAAG 1 cut(s) 554
Eco88I CYCGRG 1 cut(s) 33
Eco91I GGTNACC 1 cut(s) 825
EcoICRI GAGCTC 2 cut(s) 199, 259
EcoO65I GGTNACC 1 cut(s) 825
EcoRV GATATC 1 cut(s) 846
EcoT22I ATGCAT 1 cut(s) 643
EcoT38I GRGCYC 2 cut(s) 201, 261
Esp3I CGTCTC 2 cut(s) 129, 513
FaeI CATG 2 cut(s) 411, 902
FaqI GGGAC 1 cut(s) 793
FatI CATG 2 cut(s) 407, 898
FauI CCCGC 1 cut(s) 178
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 3 cut(s) 205, 247, 440
FokI GGATG 1 cut(s) 650
FriOI GRGCYC 2 cut(s) 201, 261
Fsp4HI GCNGC 3 cut(s) 205, 247, 440
FspBI CTAG 3 cut(s) 110, 675, 779
GlaI GCGC 1 cut(s) 270
GluI GCNGC 3 cut(s) 205, 247, 440
GsuI CTGGAG 2 cut(s) 44, 275
HaeIII GGCC 1 cut(s) 225
HapII CCGG 6 cut(s) 34, 129, 331, 412, 604, 762
HgaI GACGC 2 cut(s) 146, 495
HhaI GCGC 1 cut(s) 271
Hin1I GRCGYC 2 cut(s) 138, 506
Hin1II CATG 2 cut(s) 411, 902
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HincII GTYRAC 2 cut(s) 298, 558
HindII GTYRAC 2 cut(s) 298, 558
HinfI GANTC 5 cut(s) 5, 113, 119, 284, 380
HpaII CCGG 6 cut(s) 34, 129, 331, 412, 604, 762
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 3 cut(s) 241, 298, 558
Hpy188I TCNGA 7 cut(s) 92, 118, 124, 283, 345, 595, 889
Hpy188III TCNNGA 5 cut(s) 82, 194, 530, 604, 937
Hpy8I GTNNAC 3 cut(s) 241, 298, 558
Hpy99I CGWCG 5 cut(s) 179, 182, 215, 224, 299
HpyAV CCTTC 3 cut(s) 57, 269, 941
HpyCH4III ACNGT 4 cut(s) 453, 649, 717, 789
HpyCH4IV ACGT 1 cut(s) 576
HpyCH4V TGCA 6 cut(s) 439, 536, 641, 741, 836, 928
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
HpyF3I CTNAG 1 cut(s) 690
HpySE526I ACGT 1 cut(s) 576
Hsp92I GRCGYC 2 cut(s) 138, 506
Hsp92II CATG 2 cut(s) 411, 902
HspAI GCGC 1 cut(s) 269
Kpn2I TCCGGA 1 cut(s) 603
KspI CCGCGG 1 cut(s) 247
Kzo9I GATC 3 cut(s) 92, 181, 278
LguI GCTCTTC 1 cut(s) 341
LmnI GCTCC 4 cut(s) 93, 256, 264, 414
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 3 cut(s) 216, 523, 628
MaeI CTAG 3 cut(s) 110, 675, 779
MaeII ACGT 1 cut(s) 576
MaeIII GTNAC 1 cut(s) 825
MalI GATC 3 cut(s) 94, 183, 280
MboI GATC 3 cut(s) 92, 181, 278
MboII GAAGA 3 cut(s) 144, 358, 560
MfeI CAATTG 1 cut(s) 768
MflI RGATCY 1 cut(s) 278
MhlI GDGCHC 2 cut(s) 201, 261
MluCI AATT 5 cut(s) 231, 522, 607, 726, 768
MlyI GAGTC 3 cut(s) 107, 113, 389
MmeI TCCRAC 1 cut(s) 141
Mph1103I ATGCAT 1 cut(s) 643
MroI TCCGGA 1 cut(s) 603
MroXI GAANNNNTTC 1 cut(s) 567
MseI TTAA 2 cut(s) 396, 549
MspA1I CMGCKG 1 cut(s) 246
MspCI CTTAAG 1 cut(s) 548
MspI CCGG 6 cut(s) 34, 129, 331, 412, 604, 762
MspR9I CCNGG 3 cut(s) 34, 35, 129
MunI CAATTG 1 cut(s) 768
MvnI CGCG 3 cut(s) 195, 246, 269
MwoI GCNNNNNNNGC 1 cut(s) 201
NciI CCSGG 3 cut(s) 34, 35, 129
NdeII GATC 3 cut(s) 92, 181, 278
NlaIII CATG 2 cut(s) 411, 902
NlaIV GGNNCC 2 cut(s) 39, 226
NruI TCGCGA 1 cut(s) 195
NsiI ATGCAT 1 cut(s) 643
NspV TTCGAA 1 cut(s) 287
PciSI GCTCTTC 1 cut(s) 341
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 1 cut(s) 284
PkrI GCNGC 3 cut(s) 206, 248, 441
PleI GAGTC 3 cut(s) 107, 113, 388
PpsI GAGTC 3 cut(s) 107, 113, 388
Psp124BI GAGCTC 2 cut(s) 201, 261
PspEI GGTNACC 1 cut(s) 825
PspN4I GGNNCC 2 cut(s) 39, 226
PspPI GGNCC 2 cut(s) 224, 328
PsuI RGATCY 1 cut(s) 278
RruI TCGCGA 1 cut(s) 195
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
SacI GAGCTC 2 cut(s) 201, 261
SacII CCGCGG 1 cut(s) 247
SalI GTCGAC 1 cut(s) 296
SapI GCTCTTC 1 cut(s) 341
SaqAI TTAA 2 cut(s) 396, 549
SatI GCNGC 3 cut(s) 205, 247, 440
Sau3AI GATC 3 cut(s) 92, 181, 278
Sau96I GGNCC 2 cut(s) 224, 328
SchI GAGTC 3 cut(s) 107, 113, 389
ScrFI CCNGG 3 cut(s) 34, 35, 129
SduI GDGCHC 2 cut(s) 201, 261
SfaNI GCATC 3 cut(s) 216, 523, 628
Sfr303I CCGCGG 1 cut(s) 247
SfuI TTCGAA 1 cut(s) 287
SgrBI CCGCGG 1 cut(s) 247
SinI GGWCC 1 cut(s) 328
SmaI CCCGGG 1 cut(s) 35
SmlI CTYRAG 2 cut(s) 548, 893
SmoI CTYRAG 2 cut(s) 548, 893
Sse9I AATT 5 cut(s) 231, 522, 607, 726, 768
SsiI CCGC 8 cut(s) 96, 171, 204, 244, 246, 267, 472, 581
SspMI CTAG 3 cut(s) 110, 675, 779
SstI GAGCTC 2 cut(s) 201, 261
StyD4I CCNGG 3 cut(s) 32, 33, 127
TaaI ACNGT 4 cut(s) 453, 649, 717, 789
TaiI ACGT 1 cut(s) 579
TaqI TCGA 6 cut(s) 83, 180, 273, 287, 297, 734
TasI AATT 5 cut(s) 231, 522, 607, 726, 768
TauI GCSGC 2 cut(s) 207, 249
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 2 cut(s) 396, 549
Tru9I TTAA 2 cut(s) 396, 549
TscAI CASTG 2 cut(s) 155, 654
TseI GCWGC 1 cut(s) 439
TspDTI ATGAA 2 cut(s) 396, 601
TspMI CCCGGG 1 cut(s) 33
TspRI CASTG 2 cut(s) 155, 654
Vha464I CTTAAG 1 cut(s) 548
VpaK11BI GGWCC 1 cut(s) 328
XapI RAATTY 1 cut(s) 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 818
XmaI CCCGGG 1 cut(s) 33
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 3 cut(s) 110, 675, 779
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.