Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001894

Physical Location & Seq

Genomic Coordinates Forward (+)

68965412 .. 68966409

Gene Structure 998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0564500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCGGGTTAAGGGGCTTACAAACGATCAAGTAAAGAGTCATCTCCAGAAGTTCAGAATTTACAAAAAGGCGGGACTCCCGGTTCCGCAAGCCGGAGCTGGCAGTAGTAGTGCAGAGTCTGCAGACAATCTTCATCAGCCAGCAATGGCATTACAAAAACAGTGGACTCTCCAATCCCAGGTTCCGTATACATATGAATTTTTTGGCACAGCCAGTACTTCAAGTGGTCAGTACTCGAACTGGCCGCAGCATCAGGGAGATGACCAGGGAGCGCAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3730

Protein Analysis

93

Amino Acids

10.23

Weight (kDa)

9.05

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27670
fragaria_vesca	FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51542 FvH4_6g51551
malus_domestica	MD09G1028200.v1.1 MD17G1029800.v1.1
prunus_persica	Prupe.3G290300_v2.0.a1 Prupe.3G290500_v2.0.a1
pyrus_communis	pycom111g02210 pycom111g02220 pycom17g02680 pycom17g02700 pycom17g02710 pycom17g02720
rosa_chinensis	RchiOBHm_Chr2g0173001
rosa_laevigata	RLG00000022148
rosa_multiflora	Rmu_co8290889.1_g000001 Rmu_sc0012743.1_g000007 Rmu_sc0026490.1_g000001 Rmu_sc0032348.1_g000003
rosa_roxburghii	Rroxscaffold_2G00079360
rosa_rugosa	Rorug02G0248700 Rorug02G0366500 Rorug02G0564400 Rorug02G0564500 Rorug02G0564800 Rorug05G0265600.1
rosa_samantha	Rh2AG641000 Rh2AG641100 Rh2AG641600 Rh2AG643600 Rh2AG643800 Rh2BG654700 Rh2CG620000 Rh2DG668000 Rh2DG668100
rosa_wichuraiana	Rw2G052910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	188
AciI	CCGC	4 cut(s)	4, 71, 86, 245
AcoI	YGGCCR	1 cut(s)	242
AcsI	RAATTY	2 cut(s)	57, 197
AfaI	GTAC	2 cut(s)	217, 233
AfiI	CCNNNNNNNGG	2 cut(s)	92, 178
AgsI	TTSAA	1 cut(s)	222
AjnI	CCWGG	2 cut(s)	177, 264
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AloI	GAACNNNNNNTCC	2 cut(s)	66, 98
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	247
ApoI	RAATTY	2 cut(s)	57, 197
AspLEI	GCGC	1 cut(s)	274
AsuC2I	CCSGG	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	259
BciT130I	CCWGG	2 cut(s)	179, 266
BcnI	CCSGG	1 cut(s)	80
BfaI	CTAG	1 cut(s)	280
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	2 cut(s)	245, 248
BlsI	GCNGC	2 cut(s)	246, 249
BmcAI	AGTACT	2 cut(s)	217, 233
Bme1390I	CCNGG	3 cut(s)	80, 179, 266
BmiI	GGNNCC	2 cut(s)	84, 183
BmrFI	CCNGG	3 cut(s)	80, 179, 266
BmsI	GCATC	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	177, 265
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 178
Bse1I	ACTGG	2 cut(s)	213, 245
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	2 cut(s)	179, 266
BseDI	CCNNGG	2 cut(s)	177, 265
BseLI	CCNNNNNNNGG	2 cut(s)	92, 178
BseMI	GCAATG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	213, 245
BseXI	GCAGC	1 cut(s)	259
BsgI	GTGCAG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	244
BsiSI	CCGG	2 cut(s)	80, 93
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	92, 178
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	4 cut(s)	4, 71, 86, 245
BspANI	GGCC	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	84, 183
BspMAI	CTGCAG	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	213, 245
BssECI	CCNNGG	2 cut(s)	177, 265
BssMI	GATC	1 cut(s)	25
BssNAI	GTATAC	1 cut(s)	189
Bst1107I	GTATAC	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	179, 266
Bst4CI	ACNGT	1 cut(s)	162
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstC8I	GCNNGC	3 cut(s)	90, 100, 141
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	2 cut(s)	179, 266
BstSCI	CCNGG	3 cut(s)	78, 177, 264
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	259
BstZ17I	GTATAC	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	3 cut(s)	90, 100, 141
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	216, 232
CspCI	CAANNNNNGTGG	2 cut(s)	143, 178
CviJI	RGCY	6 cut(s)	16, 92, 98, 139, 212, 244
CviKI_1	RGCY	6 cut(s)	16, 92, 98, 139, 212, 244
CviQI	GTAC	2 cut(s)	216, 232
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	177, 264
FaiI	YATR	3 cut(s)	189, 193, 195
FaqI	GGGAC	1 cut(s)	87
FauI	CCCGC	1 cut(s)	64
FauNDI	CATATG	1 cut(s)	193
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	2 cut(s)	245, 248
Fsp4HI	GCNGC	2 cut(s)	245, 248
FspBI	CTAG	1 cut(s)	280
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	2 cut(s)	245, 248
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	244
HapII	CCGG	2 cut(s)	80, 93
HhaI	GCGC	1 cut(s)	274
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HinfI	GANTC	4 cut(s)	37, 75, 116, 166
HpaII	CCGG	2 cut(s)	80, 93
Hpy166II	GTNNAC	2 cut(s)	165, 189
Hpy188I	TCNGA	1 cut(s)	56
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	2 cut(s)	165, 189
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	113, 122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	95, 269
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	280
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	1 cut(s)	122
MluCI	AATT	2 cut(s)	57, 197
MlyI	GAGTC	4 cut(s)	46, 69, 125, 160
MseI	TTAA	1 cut(s)	9
MspI	CCGG	2 cut(s)	80, 93
MspR9I	CCNGG	3 cut(s)	80, 179, 266
MvaI	CCWGG	2 cut(s)	179, 266
MwoI	GCNNNNNNNGC	1 cut(s)	119
NciI	CCSGG	1 cut(s)	80
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	1 cut(s)	25
NlaIV	GGNNCC	2 cut(s)	84, 183
PkrI	GCNGC	2 cut(s)	246, 249
PleI	GAGTC	4 cut(s)	45, 69, 124, 160
PpsI	GAGTC	4 cut(s)	45, 69, 124, 160
Psp6I	CCWGG	2 cut(s)	177, 264
PspGI	CCWGG	2 cut(s)	177, 264
PspN4I	GGNNCC	2 cut(s)	84, 183
PstI	CTGCAG	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	119
RsaI	GTAC	2 cut(s)	217, 233
RsaNI	GTAC	2 cut(s)	216, 232
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	2 cut(s)	245, 248
Sau3AI	GATC	1 cut(s)	25
ScaI	AGTACT	2 cut(s)	217, 233
SchI	GAGTC	4 cut(s)	46, 69, 125, 160
ScrFI	CCNGG	3 cut(s)	80, 179, 266
SetI	ASST	2 cut(s)	100, 183
SfaNI	GCATC	1 cut(s)	259
SfcI	CTRYAG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	57, 197
SsiI	CCGC	4 cut(s)	4, 71, 86, 245
SspMI	CTAG	1 cut(s)	280
StyD4I	CCNGG	3 cut(s)	78, 177, 264
TaaI	ACNGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	236
TasI	AATT	2 cut(s)	57, 197
TatI	WGTACW	2 cut(s)	215, 231
TauI	GCSGC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	1 cut(s)	167
TseI	GCWGC	1 cut(s)	247
TspDTI	ATGAA	2 cut(s)	122, 210
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	167
XapI	RAATTY	2 cut(s)	57, 197
XmiI	GTMKAC	1 cut(s)	188
XspI	CTAG	1 cut(s)	280
ZrmI	AGTACT	2 cut(s)	217, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.