Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001894

Physical Location & Seq

Genomic Coordinates Forward (+)

1819348 .. 1819581

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g02720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCCTCTTCTGATTCTGGACCAACATGCCGTGCTGAGCGATTTACCAGTCACCCTTTCCTCTCTTCTCTCAGACGTTAGTTGGGGAGGACTTGAGGAATTGATCCTTCCATCTCTTTTTGCATCGACAGAACGCATATACAATTGGACTACACATATCGCGCGTGGTGAGGATATCCCGCTGACATGCAACCCATTGACAAAAGTGAGAGTTCCATGGCTGTTTTCCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3730

Protein Analysis

78

Amino Acids

8.66

Weight (kDa)

4.73

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27670
fragaria_vesca	FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51542 FvH4_6g51551
malus_domestica	MD09G1028200.v1.1 MD17G1029800.v1.1
prunus_persica	Prupe.3G290300_v2.0.a1 Prupe.3G290500_v2.0.a1
pyrus_communis	pycom111g02210 pycom111g02220 pycom17g02680 pycom17g02700 pycom17g02710 pycom17g02720
rosa_chinensis	RchiOBHm_Chr2g0173001
rosa_laevigata	RLG00000022148
rosa_multiflora	Rmu_co8290889.1_g000001 Rmu_sc0012743.1_g000007 Rmu_sc0026490.1_g000001 Rmu_sc0032348.1_g000003
rosa_roxburghii	Rroxscaffold_2G00079360
rosa_rugosa	Rorug02G0248700 Rorug02G0366500 Rorug02G0564400 Rorug02G0564500 Rorug02G0564800 Rorug05G0265600.1
rosa_samantha	Rh2AG641000 Rh2AG641100 Rh2AG641600 Rh2AG643600 Rh2AG643800 Rh2BG654700 Rh2CG620000 Rh2DG668000 Rh2DG668100
rosa_wichuraiana	Rw2G052910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	161, 163
AciI	CCGC	1 cut(s)	179
AclWI	GGATC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	43, 179
AvaII	GGWCC	1 cut(s)	19
BccI	CCATC	1 cut(s)	118
BceAI	ACGGC	1 cut(s)	14
BlpI	GCTNAGC	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmsI	GCATC	1 cut(s)	131
Bpu1102I	GCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	215
BseMII	CTCAG	2 cut(s)	26, 84
BseNI	ACTGG	1 cut(s)	47
Bsh1236I	CGCG	2 cut(s)	161, 163
Bsp143I	GATC	1 cut(s)	102
Bsp1720I	GCTNAGC	1 cut(s)	35
Bsp19I	CCATGG	1 cut(s)	215
BspACI	CCGC	1 cut(s)	179
BspCNI	CTCAG	2 cut(s)	27, 83
BspFNI	CGCG	2 cut(s)	161, 163
BspPI	GGATC	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	215
Bst6I	CTCTTC	2 cut(s)	12, 69
BstDEI	CTNAG	2 cut(s)	35, 70
BstDSI	CCRYGG	1 cut(s)	215
BstFNI	CGCG	2 cut(s)	161, 163
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	102
BstNSI	RCATGY	2 cut(s)	29, 189
BstUI	CGCG	2 cut(s)	161, 163
BtgI	CCRYGG	1 cut(s)	215
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	19
CviAII	CATG	3 cut(s)	26, 186, 216
CviJI	RGCY	1 cut(s)	220
CviKI_1	RGCY	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	35, 70
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
Eam1104I	CTCTTC	2 cut(s)	12, 69
EarI	CTCTTC	2 cut(s)	12, 69
Eco130I	CCWWGG	1 cut(s)	215
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	19
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	3 cut(s)	29, 189, 219
FaiI	YATR	6 cut(s)	27, 137, 139, 156, 187, 217
FatI	CATG	3 cut(s)	25, 185, 215
FauI	CCCGC	1 cut(s)	186
GlaI	GCGC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	3 cut(s)	29, 189, 219
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	1 cut(s)	13
HphI	GGTGA	2 cut(s)	43, 179
Hpy188I	TCNGA	2 cut(s)	12, 73
Hpy188III	TCNNGA	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	2 cut(s)	122, 189
HpyF3I	CTNAG	2 cut(s)	35, 70
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	3 cut(s)	29, 189, 219
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	102
LpnPI	CCDG	2 cut(s)	2, 60
LweI	GCATC	1 cut(s)	131
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	1 cut(s)	56
MfeI	CAATTG	1 cut(s)	142
MluCI	AATT	2 cut(s)	98, 142
MnlI	CCTC	5 cut(s)	15, 70, 80, 88, 163
MspA1I	CMGCKG	1 cut(s)	181
MunI	CAATTG	1 cut(s)	142
MvnI	CGCG	2 cut(s)	161, 163
NcoI	CCATGG	1 cut(s)	215
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	3 cut(s)	29, 189, 219
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	2 cut(s)	29, 189
PfeI	GAWTC	1 cut(s)	13
PspPI	GGNCC	1 cut(s)	19
Sau3AI	GATC	1 cut(s)	102
Sau96I	GGNCC	1 cut(s)	19
SetI	ASST	1 cut(s)	78
SfaNI	GCATC	1 cut(s)	131
SinI	GGWCC	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	98, 142
SsiI	CCGC	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	215
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	125
TasI	AATT	2 cut(s)	98, 142
TfiI	GAWTC	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	19
XceI	RCATGY	2 cut(s)	29, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.