Prupe.3G290500_v2.0.a1

Encoded by

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
26070162 .. 26073612
3451 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G290500.1

Sequence Viewer

Length: 1401 bp
ATGCAAATCATTTGTCATGAAATATTTAAAACCGGCAGCATTACGTTAGAAAATTTGATAGTCTCTACAATATTAGTGTATGGTACTACAGGGTTATTTGCTGAATCCCATGGCTGCAATTTCCAGACAACCGTAATAACTGTGATAAGGTGCCTTTCACAAGCTCCTCGGTTGCCAGCCTTGGATTGGGATACGATCATCAGACGCTGCATGGGTTATGAGGCGCAGGTTGCCGAGTTGTTTCCAACAGAATCATCTCTTGAAAAAGGAACCCTAAGGGAGGAATGTGTAAAGTTCTCATTGGCTCATGCCAATAAATTTGATCAGCTCCCAAGTTTCCTGGATGAGCTGTCTGACTTGTCCAGATTCAGAACTCTTGAGTTGAAGCTGCAATCTTGTCTTCTGGATCATCTTGTAGACCTCATTAAAGTATTCTCAGGTTCCAGGCTTGAGAAAGTATTTGATGATGTGCGTAGCTACTTCTCTTCTGTTACTTCATATCAATCACTTGGCACTGATGAGACAAGCTTATTACGGATTTCATGCTGGAAGGGTTTCTATCAGTGTTTAGATGAGGCTTCTCTTGACTCTCTAGAGTACATATCCCAAATAGAAAAGGGCATGGAGGTGCTCTTTCTTCAAGGAAAGCAGCTGCAGGATTACATTCCAACACTCTTTTCCTTGATGCCTGCAATGCAATTGCCTGCCATAGGAGGAGGAGGTCAGTTGCGTACTGTAGAGGAGTGGTCCGAGGCGGTTAGATGCTTTAGGAAGGCTCGGAAAAGTTGGTTGTTGGATTTCCTGCAGGTTTCCCAGGAGGACCTGCAACAAAGAGACGGTCAGCTTATTGGAGTTCTGAAAAAGGTTCAAACCAAAGCTAAGCTTGTTAGGATTGGTTCGATCCCATTGACTGAGCTGGGAAGGCTAAAAGCTTGGATATTGAACACAGAATTAAATGGTATGTGGGATGCGCTCGTTGAAGTTGTAGCAGCTTTGCAACATGCAGACGGAAGTGTCAAAAGACAGTGGCTTATTGATGCAGTTGAAATTAGCCGTGTATCTAGCTATCCTTCCATGGCATTGCAATTTCTTGGGTTGCTATCTGGTAGCTGGAGCAAATACATGCCTCTTCTGATTCTGGGCAAACATATACTTTGGGGAGGAGTTGCGGAATTTGTCGTTCCTTCTCTGTTTGCATCGACAGAACGCATTTACAACTGGGCTATACATATCGCACGGTGTGAGGATGTGCCACCTGACACGCAACCCATTGATAAAATTGAGAATTCCATGGCTGTGTTCTTATTGAGAGTGATGCATTGTACCTCTGTGTTTTTTAAGGATTACCTGCCTCTGGAGAAGCAGCTTAAGCTTGCCTTTAAAATATCCCATTTATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

467

Amino Acids

52.78

Weight (kDa)

5.92

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1013
Acc36I ACCTGC 4 cut(s) 217, 796, 831, 1356
AccB1I GGYRCC 1 cut(s) 150
AccI GTMKAC 1 cut(s) 417
AciI CCGC 2 cut(s) 755, 1169
AclWI GGATC 2 cut(s) 414, 895
AcsI RAATTY 4 cut(s) 52, 317, 1172, 1285
AdeI CACNNNGTG 1 cut(s) 1241
AfaI GTAC 4 cut(s) 85, 599, 733, 1324
AfiI CCNNNNNNNGG 4 cut(s) 186, 280, 710, 1354
AflII CTTAAG 1 cut(s) 1367
AgsI TTSAA 7 cut(s) 263, 385, 641, 869, 943, 980, 1046
AjnI CCWGG 3 cut(s) 339, 443, 813
AjuI GAANNNNNNNTTGG 2 cut(s) 661, 693
Alw21I GWGCWC 1 cut(s) 633
Alw26I GTCTC 3 cut(s) 67, 515, 828
AlwI GGATC 2 cut(s) 414, 895
AlwNI CAGNNNCTG 1 cut(s) 207
ApeKI GCWGC 8 cut(s) 36, 114, 207, 388, 649, 652, 989, 1363
ApoI RAATTY 4 cut(s) 52, 317, 1172, 1285
ArsI GACNNNNNNTTYG 3 cut(s) 30, 823, 855
Asp700I GAANNNNTTC 1 cut(s) 554
AspLEI GCGC 2 cut(s) 226, 973
AspS9I GGNCC 2 cut(s) 747, 820
AvaII GGWCC 2 cut(s) 747, 820
AxyI CCTNAGG 1 cut(s) 275
BanI GGYRCC 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 633
BbvI GCAGC 8 cut(s) 48, 101, 194, 375, 639, 661, 1001, 1375
BceAI ACGGC 1 cut(s) 1038
BciT130I CCWGG 3 cut(s) 341, 445, 815
BciVI GTATCC 1 cut(s) 184
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 3 cut(s) 67, 515, 828
BfaI CTAG 2 cut(s) 593, 1062
BfmI CTRYAG 4 cut(s) 87, 653, 735, 803
BfrI CTTAAG 1 cut(s) 1367
BfuAI ACCTGC 4 cut(s) 217, 796, 831, 1356
BfuI GTATCC 1 cut(s) 184
BisI GCNGC 8 cut(s) 37, 115, 208, 389, 650, 653, 990, 1364
BlpI GCTNAGC 1 cut(s) 879
BlsI GCNGC 8 cut(s) 38, 116, 209, 390, 651, 654, 991, 1365
Bme1390I CCNGG 3 cut(s) 341, 445, 815
Bme18I GGWCC 2 cut(s) 747, 820
BmgT120I GGNCC 2 cut(s) 747, 820
BmiI GGNNCC 3 cut(s) 152, 271, 442
BmrFI CCNGG 3 cut(s) 341, 445, 815
BmrI ACTGGG 1 cut(s) 1228
BmsI GCATC 6 cut(s) 675, 752, 958, 1027, 1205, 1305
BmuI ACTGGG 1 cut(s) 1228
BpiI GAAGAC 1 cut(s) 392
BpmI CTGGAG 2 cut(s) 1132, 1376
Bpu1102I GCTNAGC 1 cut(s) 879
BpuEI CTTGAG 2 cut(s) 398, 470
BsaJI CCNNGG 7 cut(s) 109, 167, 180, 750, 813, 1074, 1290
Bsc4I CCNNNNNNNGG 4 cut(s) 186, 280, 710, 1354
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 1223
Bse21I CCTNAGG 1 cut(s) 275
Bse3DI GCAATG 2 cut(s) 699, 1079
BseBI CCWGG 3 cut(s) 341, 445, 815
BseDI CCNNGG 7 cut(s) 109, 167, 180, 750, 813, 1074, 1290
BseGI GGATG 3 cut(s) 349, 973, 1252
BseLI CCNNNNNNNGG 4 cut(s) 186, 280, 710, 1354
BseMI GCAATG 2 cut(s) 699, 1079
BseMII CTCAG 2 cut(s) 450, 903
BseNI ACTGG 1 cut(s) 1223
BseRI GAGGAG 5 cut(s) 156, 729, 732, 755, 1176
BseXI GCAGC 8 cut(s) 48, 101, 194, 375, 639, 661, 1001, 1375
BseYI CCCAGC 1 cut(s) 916
BshNI GGYRCC 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 633
BsiSI CCGG 1 cut(s) 33
BslI CCNNNNNNNGG 4 cut(s) 186, 280, 710, 1354
BsmAI GTCTC 3 cut(s) 67, 515, 828
BsmBI CGTCTC 1 cut(s) 828
Bsp1286I GDGCHC 1 cut(s) 633
Bsp143I GATC 4 cut(s) 195, 322, 406, 900
Bsp1720I GCTNAGC 1 cut(s) 879
Bsp19I CCATGG 3 cut(s) 109, 1074, 1290
BspACI CCGC 2 cut(s) 755, 1169
BspCNI CTCAG 2 cut(s) 449, 904
BspHI TCATGA 1 cut(s) 16
BspLI GGNNCC 3 cut(s) 152, 271, 442
BspMAI CTGCAG 2 cut(s) 657, 807
BspMI ACCTGC 4 cut(s) 217, 796, 831, 1356
BspPI GGATC 2 cut(s) 414, 895
BspT107I GGYRCC 1 cut(s) 150
BspTI CTTAAG 1 cut(s) 1367
BsrDI GCAATG 2 cut(s) 699, 1079
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 1 cut(s) 1223
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 7 cut(s) 109, 167, 180, 750, 813, 1074, 1290
BssMI GATC 4 cut(s) 195, 322, 406, 900
BssT1I CCWWGG 4 cut(s) 109, 180, 1074, 1290
Bst2UI CCWGG 3 cut(s) 341, 445, 815
Bst4CI ACNGT 6 cut(s) 133, 142, 736, 839, 1026, 1239
Bst6I CTCTTC 2 cut(s) 490, 1134
BstAFI CTTAAG 1 cut(s) 1367
BstC8I GCNNGC 4 cut(s) 177, 690, 705, 1374
BstDEI CTNAG 4 cut(s) 275, 436, 879, 912
BstDSI CCRYGG 3 cut(s) 109, 1074, 1290
BstENI CCTNNNNNAGG 2 cut(s) 278, 708
BstF5I GGATG 3 cut(s) 349, 973, 1252
BstHHI GCGC 2 cut(s) 226, 973
BstKTI GATC 4 cut(s) 198, 325, 409, 903
BstMAI GTCTC 3 cut(s) 67, 515, 828
BstMBI GATC 4 cut(s) 195, 322, 406, 900
BstMWI GCNNNNNNNGC 4 cut(s) 230, 694, 922, 1369
BstNI CCWGG 3 cut(s) 341, 445, 815
BstNSI RCATGY 2 cut(s) 1004, 1126
BstSCI CCNGG 3 cut(s) 339, 443, 813
BstSFI CTRYAG 4 cut(s) 87, 653, 735, 803
BstV1I GCAGC 8 cut(s) 48, 101, 194, 375, 639, 661, 1001, 1375
BstV2I GAAGAC 1 cut(s) 392
Bsu36I CCTNAGG 1 cut(s) 275
BsuI GTATCC 1 cut(s) 184
BtgI CCRYGG 3 cut(s) 109, 1074, 1290
BtsCI GGATG 3 cut(s) 349, 973, 1252
BtsIMutI CAGTG 3 cut(s) 513, 569, 1031
BveI ACCTGC 4 cut(s) 217, 796, 831, 1356
Cac8I GCNNGC 4 cut(s) 177, 690, 705, 1374
CaiI CAGNNNCTG 1 cut(s) 207
CciI TCATGA 1 cut(s) 16
CfoI GCGC 2 cut(s) 226, 973
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 747, 820
CseI GACGC 1 cut(s) 213
Csp6I GTAC 4 cut(s) 84, 598, 732, 1323
CviQI GTAC 4 cut(s) 84, 598, 732, 1323
DdeI CTNAG 4 cut(s) 275, 436, 879, 912
DpnI GATC 4 cut(s) 197, 324, 408, 902
DpnII GATC 4 cut(s) 195, 322, 406, 900
DraI TTTAAA 2 cut(s) 28, 1381
DraIII CACNNNGTG 1 cut(s) 1241
DrdI GACNNNNNNGTC 1 cut(s) 1013
DseDI GACNNNNNNGTC 1 cut(s) 1013
Eam1104I CTCTTC 2 cut(s) 490, 1134
EarI CTCTTC 2 cut(s) 490, 1134
Eco130I CCWWGG 4 cut(s) 109, 180, 1074, 1290
Eco47I GGWCC 2 cut(s) 747, 820
Eco81I CCTNAGG 1 cut(s) 275
EcoNI CCTNNNNNAGG 2 cut(s) 278, 708
EcoO109I RGGNCCY 1 cut(s) 820
EcoRI GAATTC 1 cut(s) 1285
EcoRII CCWGG 3 cut(s) 339, 443, 813
EcoT14I CCWWGG 4 cut(s) 109, 180, 1074, 1290
EcoT22I ATGCAT 1 cut(s) 1320
ErhI CCWWGG 4 cut(s) 109, 180, 1074, 1290
Esp3I CGTCTC 1 cut(s) 828
FalI AAGNNNNNCTT 4 cut(s) 867, 899, 1361, 1393
FbaI TGATCA 1 cut(s) 322
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 8 cut(s) 37, 115, 208, 389, 650, 653, 990, 1364
FokI GGATG 3 cut(s) 356, 980, 1259
Fsp4HI GCNGC 8 cut(s) 37, 115, 208, 389, 650, 653, 990, 1364
FspBI CTAG 2 cut(s) 593, 1062
GlaI GCGC 2 cut(s) 225, 972
GluI GCNGC 8 cut(s) 37, 115, 208, 389, 650, 653, 990, 1364
GsaI CCCAGC 1 cut(s) 920
GsuI CTGGAG 2 cut(s) 1132, 1376
HapII CCGG 1 cut(s) 33
HgaI GACGC 1 cut(s) 213
HhaI GCGC 2 cut(s) 226, 973
Hin6I GCGC 2 cut(s) 224, 971
HinP1I GCGC 2 cut(s) 224, 971
HindIII AAGCTT 4 cut(s) 526, 881, 930, 1370
HinfI GANTC 5 cut(s) 104, 251, 366, 587, 1135
HpaII CCGG 1 cut(s) 33
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 7 cut(s) 203, 355, 371, 751, 780, 858, 1134
Hpy188III TCNNGA 9 cut(s) 17, 124, 260, 363, 377, 404, 584, 593, 1355
Hpy8I GTNNAC 1 cut(s) 418
HpyAV CCTTC 5 cut(s) 544, 766, 915, 1080, 1194
HpyCH4III ACNGT 6 cut(s) 133, 142, 736, 839, 1026, 1239
HpyCH4IV ACGT 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 4 cut(s) 230, 694, 922, 1369
HpyF3I CTNAG 4 cut(s) 275, 436, 879, 912
HpySE526I ACGT 1 cut(s) 44
HspAI GCGC 2 cut(s) 224, 971
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 4 cut(s) 195, 322, 406, 900
LmnI GCTCC 3 cut(s) 169, 333, 1113
Lsp1109I GCAGC 8 cut(s) 48, 101, 194, 375, 639, 661, 1001, 1375
LweI GCATC 6 cut(s) 675, 752, 958, 1027, 1205, 1305
MaeI CTAG 2 cut(s) 593, 1062
MaeII ACGT 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 490
MalI GATC 4 cut(s) 197, 324, 408, 902
MboI GATC 4 cut(s) 195, 322, 406, 900
MboII GAAGA 4 cut(s) 392, 477, 629, 1121
MfeI CAATTG 1 cut(s) 698
MhlI GDGCHC 1 cut(s) 633
MlyI GAGTC 1 cut(s) 581
MmeI TCCRAC 3 cut(s) 269, 692, 774
Mph1103I ATGCAT 1 cut(s) 1320
MroXI GAANNNNTTC 1 cut(s) 554
MseI TTAA 7 cut(s) 27, 426, 953, 1338, 1368, 1380, 1399
MslI CAYNNNNRTG 2 cut(s) 626, 1295
MspA1I CMGCKG 1 cut(s) 652
MspCI CTTAAG 1 cut(s) 1367
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 3 cut(s) 341, 445, 815
MunI CAATTG 1 cut(s) 698
MvaI CCWGG 3 cut(s) 341, 445, 815
MwoI GCNNNNNNNGC 4 cut(s) 230, 694, 922, 1369
NcoI CCATGG 3 cut(s) 109, 1074, 1290
NdeII GATC 4 cut(s) 195, 322, 406, 900
NlaIV GGNNCC 3 cut(s) 152, 271, 442
NmeAIII GCCGAG 1 cut(s) 259
NsiI ATGCAT 1 cut(s) 1320
NspI RCATGY 2 cut(s) 1004, 1126
PagI TCATGA 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 554
PfeI GAWTC 4 cut(s) 104, 251, 366, 1135
PfoI TCCNGGA 1 cut(s) 339
PkrI GCNGC 8 cut(s) 38, 116, 209, 390, 651, 654, 991, 1365
PleI GAGTC 1 cut(s) 581
PpsI GAGTC 1 cut(s) 581
PpuMI RGGWCCY 1 cut(s) 820
Psp5II RGGWCCY 1 cut(s) 820
Psp6I CCWGG 3 cut(s) 339, 443, 813
PspFI CCCAGC 1 cut(s) 916
PspGI CCWGG 3 cut(s) 339, 443, 813
PspN4I GGNNCC 3 cut(s) 152, 271, 442
PspPI GGNCC 2 cut(s) 747, 820
PspPPI RGGWCCY 1 cut(s) 820
PstI CTGCAG 2 cut(s) 657, 807
PstNI CAGNNNCTG 1 cut(s) 207
PvuII CAGCTG 1 cut(s) 652
RsaI GTAC 4 cut(s) 85, 599, 733, 1324
RsaNI GTAC 4 cut(s) 84, 598, 732, 1323
RseI CAYNNNNRTG 2 cut(s) 626, 1295
SaqAI TTAA 7 cut(s) 27, 426, 953, 1338, 1368, 1380, 1399
SatI GCNGC 8 cut(s) 37, 115, 208, 389, 650, 653, 990, 1364
Sau3AI GATC 4 cut(s) 195, 322, 406, 900
Sau96I GGNCC 2 cut(s) 747, 820
SbfI CCTGCAGG 1 cut(s) 807
SchI GAGTC 1 cut(s) 581
ScrFI CCNGG 3 cut(s) 341, 445, 815
SdaI CCTGCAGG 1 cut(s) 807
SduI GDGCHC 1 cut(s) 633
SfaNI GCATC 6 cut(s) 675, 752, 958, 1027, 1205, 1305
SfcI CTRYAG 4 cut(s) 87, 653, 735, 803
SinI GGWCC 2 cut(s) 747, 820
SmiMI CAYNNNNRTG 2 cut(s) 626, 1295
SmlI CTYRAG 3 cut(s) 377, 449, 1367
SmoI CTYRAG 3 cut(s) 377, 449, 1367
Sse8387I CCTGCAGG 1 cut(s) 807
SsiI CCGC 2 cut(s) 755, 1169
SspI AATATT 2 cut(s) 24, 72
SspMI CTAG 2 cut(s) 593, 1062
StyD4I CCNGG 3 cut(s) 339, 443, 813
StyI CCWWGG 4 cut(s) 109, 180, 1074, 1290
TaaI ACNGT 6 cut(s) 133, 142, 736, 839, 1026, 1239
TaiI ACGT 1 cut(s) 47
TaqI TCGA 2 cut(s) 899, 1199
TatI WGTACW 1 cut(s) 597
TfiI GAWTC 4 cut(s) 104, 251, 366, 1135
Tru1I TTAA 7 cut(s) 27, 426, 953, 1338, 1368, 1380, 1399
Tru9I TTAA 7 cut(s) 27, 426, 953, 1338, 1368, 1380, 1399
TscAI CASTG 3 cut(s) 520, 569, 1031
TseI GCWGC 8 cut(s) 36, 114, 207, 388, 649, 652, 989, 1363
TspDTI ATGAA 3 cut(s) 33, 486, 531
TspGWI ACGGA 2 cut(s) 550, 1023
TspRI CASTG 3 cut(s) 520, 569, 1031
Vha464I CTTAAG 1 cut(s) 1367
VpaK11BI GGWCC 2 cut(s) 747, 820
XagI CCTNNNNNAGG 2 cut(s) 278, 708
XapI RAATTY 4 cut(s) 52, 317, 1172, 1285
XbaI TCTAGA 1 cut(s) 592
XceI RCATGY 2 cut(s) 1004, 1126
XcmI CCANNNNNNNNNTGG 1 cut(s) 183
XmiI GTMKAC 1 cut(s) 417
XmnI GAANNNNTTC 1 cut(s) 554
XspI CTAG 2 cut(s) 593, 1062
Zsp2I ATGCAT 1 cut(s) 1320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.