Encoded by
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G27670 |
| fragaria_vesca | FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51542 FvH4_6g51551 |
| malus_domestica | MD09G1028200.v1.1 MD17G1029800.v1.1 |
| prunus_persica | Prupe.3G290300_v2.0.a1 Prupe.3G290500_v2.0.a1 |
| pyrus_communis | pycom111g02210 pycom111g02220 pycom17g02680 pycom17g02700 pycom17g02710 pycom17g02720 |
| rosa_chinensis | RchiOBHm_Chr2g0173001 |
| rosa_laevigata | RLG00000022148 |
| rosa_multiflora | Rmu_co8290889.1_g000001 Rmu_sc0012743.1_g000007 Rmu_sc0026490.1_g000001 Rmu_sc0032348.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00079360 |
| rosa_rugosa | Rorug02G0248700 Rorug02G0366500 Rorug02G0564400 Rorug02G0564500 Rorug02G0564800 Rorug05G0265600.1 |
| rosa_samantha | Rh2AG641000 Rh2AG641100 Rh2AG641600 Rh2AG643600 Rh2AG643800 Rh2BG654700 Rh2CG620000 Rh2DG668000 Rh2DG668100 |
| rosa_wichuraiana | Rw2G052910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1013 |
| Acc36I | ACCTGC | 4 cut(s) | 217, 796, 831, 1356 |
| AccB1I | GGYRCC | 1 cut(s) | 150 |
| AccI | GTMKAC | 1 cut(s) | 417 |
| AciI | CCGC | 2 cut(s) | 755, 1169 |
| AclWI | GGATC | 2 cut(s) | 414, 895 |
| AcsI | RAATTY | 4 cut(s) | 52, 317, 1172, 1285 |
| AdeI | CACNNNGTG | 1 cut(s) | 1241 |
| AfaI | GTAC | 4 cut(s) | 85, 599, 733, 1324 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 186, 280, 710, 1354 |
| AflII | CTTAAG | 1 cut(s) | 1367 |
| AgsI | TTSAA | 7 cut(s) | 263, 385, 641, 869, 943, 980, 1046 |
| AjnI | CCWGG | 3 cut(s) | 339, 443, 813 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 661, 693 |
| Alw21I | GWGCWC | 1 cut(s) | 633 |
| Alw26I | GTCTC | 3 cut(s) | 67, 515, 828 |
| AlwI | GGATC | 2 cut(s) | 414, 895 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 207 |
| ApeKI | GCWGC | 8 cut(s) | 36, 114, 207, 388, 649, 652, 989, 1363 |
| ApoI | RAATTY | 4 cut(s) | 52, 317, 1172, 1285 |
| ArsI | GACNNNNNNTTYG | 3 cut(s) | 30, 823, 855 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 554 |
| AspLEI | GCGC | 2 cut(s) | 226, 973 |
| AspS9I | GGNCC | 2 cut(s) | 747, 820 |
| AvaII | GGWCC | 2 cut(s) | 747, 820 |
| AxyI | CCTNAGG | 1 cut(s) | 275 |
| BanI | GGYRCC | 1 cut(s) | 150 |
| BbsI | GAAGAC | 1 cut(s) | 392 |
| Bbv12I | GWGCWC | 1 cut(s) | 633 |
| BbvI | GCAGC | 8 cut(s) | 48, 101, 194, 375, 639, 661, 1001, 1375 |
| BceAI | ACGGC | 1 cut(s) | 1038 |
| BciT130I | CCWGG | 3 cut(s) | 341, 445, 815 |
| BciVI | GTATCC | 1 cut(s) | 184 |
| BclI | TGATCA | 1 cut(s) | 322 |
| BcoDI | GTCTC | 3 cut(s) | 67, 515, 828 |
| BfaI | CTAG | 2 cut(s) | 593, 1062 |
| BfmI | CTRYAG | 4 cut(s) | 87, 653, 735, 803 |
| BfrI | CTTAAG | 1 cut(s) | 1367 |
| BfuAI | ACCTGC | 4 cut(s) | 217, 796, 831, 1356 |
| BfuI | GTATCC | 1 cut(s) | 184 |
| BisI | GCNGC | 8 cut(s) | 37, 115, 208, 389, 650, 653, 990, 1364 |
| BlpI | GCTNAGC | 1 cut(s) | 879 |
| BlsI | GCNGC | 8 cut(s) | 38, 116, 209, 390, 651, 654, 991, 1365 |
| Bme1390I | CCNGG | 3 cut(s) | 341, 445, 815 |
| Bme18I | GGWCC | 2 cut(s) | 747, 820 |
| BmgT120I | GGNCC | 2 cut(s) | 747, 820 |
| BmiI | GGNNCC | 3 cut(s) | 152, 271, 442 |
| BmrFI | CCNGG | 3 cut(s) | 341, 445, 815 |
| BmrI | ACTGGG | 1 cut(s) | 1228 |
| BmsI | GCATC | 6 cut(s) | 675, 752, 958, 1027, 1205, 1305 |
| BmuI | ACTGGG | 1 cut(s) | 1228 |
| BpiI | GAAGAC | 1 cut(s) | 392 |
| BpmI | CTGGAG | 2 cut(s) | 1132, 1376 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 879 |
| BpuEI | CTTGAG | 2 cut(s) | 398, 470 |
| BsaJI | CCNNGG | 7 cut(s) | 109, 167, 180, 750, 813, 1074, 1290 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 186, 280, 710, 1354 |
| Bse118I | RCCGGY | 1 cut(s) | 32 |
| Bse1I | ACTGG | 1 cut(s) | 1223 |
| Bse21I | CCTNAGG | 1 cut(s) | 275 |
| Bse3DI | GCAATG | 2 cut(s) | 699, 1079 |
| BseBI | CCWGG | 3 cut(s) | 341, 445, 815 |
| BseDI | CCNNGG | 7 cut(s) | 109, 167, 180, 750, 813, 1074, 1290 |
| BseGI | GGATG | 3 cut(s) | 349, 973, 1252 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 186, 280, 710, 1354 |
| BseMI | GCAATG | 2 cut(s) | 699, 1079 |
| BseMII | CTCAG | 2 cut(s) | 450, 903 |
| BseNI | ACTGG | 1 cut(s) | 1223 |
| BseRI | GAGGAG | 5 cut(s) | 156, 729, 732, 755, 1176 |
| BseXI | GCAGC | 8 cut(s) | 48, 101, 194, 375, 639, 661, 1001, 1375 |
| BseYI | CCCAGC | 1 cut(s) | 916 |
| BshNI | GGYRCC | 1 cut(s) | 150 |
| BsiHKAI | GWGCWC | 1 cut(s) | 633 |
| BsiSI | CCGG | 1 cut(s) | 33 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 186, 280, 710, 1354 |
| BsmAI | GTCTC | 3 cut(s) | 67, 515, 828 |
| BsmBI | CGTCTC | 1 cut(s) | 828 |
| Bsp1286I | GDGCHC | 1 cut(s) | 633 |
| Bsp143I | GATC | 4 cut(s) | 195, 322, 406, 900 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 879 |
| Bsp19I | CCATGG | 3 cut(s) | 109, 1074, 1290 |
| BspACI | CCGC | 2 cut(s) | 755, 1169 |
| BspCNI | CTCAG | 2 cut(s) | 449, 904 |
| BspHI | TCATGA | 1 cut(s) | 16 |
| BspLI | GGNNCC | 3 cut(s) | 152, 271, 442 |
| BspMAI | CTGCAG | 2 cut(s) | 657, 807 |
| BspMI | ACCTGC | 4 cut(s) | 217, 796, 831, 1356 |
| BspPI | GGATC | 2 cut(s) | 414, 895 |
| BspT107I | GGYRCC | 1 cut(s) | 150 |
| BspTI | CTTAAG | 1 cut(s) | 1367 |
| BsrDI | GCAATG | 2 cut(s) | 699, 1079 |
| BsrFI | RCCGGY | 1 cut(s) | 32 |
| BsrI | ACTGG | 1 cut(s) | 1223 |
| BssAI | RCCGGY | 1 cut(s) | 32 |
| BssECI | CCNNGG | 7 cut(s) | 109, 167, 180, 750, 813, 1074, 1290 |
| BssMI | GATC | 4 cut(s) | 195, 322, 406, 900 |
| BssT1I | CCWWGG | 4 cut(s) | 109, 180, 1074, 1290 |
| Bst2UI | CCWGG | 3 cut(s) | 341, 445, 815 |
| Bst4CI | ACNGT | 6 cut(s) | 133, 142, 736, 839, 1026, 1239 |
| Bst6I | CTCTTC | 2 cut(s) | 490, 1134 |
| BstAFI | CTTAAG | 1 cut(s) | 1367 |
| BstC8I | GCNNGC | 4 cut(s) | 177, 690, 705, 1374 |
| BstDEI | CTNAG | 4 cut(s) | 275, 436, 879, 912 |
| BstDSI | CCRYGG | 3 cut(s) | 109, 1074, 1290 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 278, 708 |
| BstF5I | GGATG | 3 cut(s) | 349, 973, 1252 |
| BstHHI | GCGC | 2 cut(s) | 226, 973 |
| BstKTI | GATC | 4 cut(s) | 198, 325, 409, 903 |
| BstMAI | GTCTC | 3 cut(s) | 67, 515, 828 |
| BstMBI | GATC | 4 cut(s) | 195, 322, 406, 900 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 230, 694, 922, 1369 |
| BstNI | CCWGG | 3 cut(s) | 341, 445, 815 |
| BstNSI | RCATGY | 2 cut(s) | 1004, 1126 |
| BstSCI | CCNGG | 3 cut(s) | 339, 443, 813 |
| BstSFI | CTRYAG | 4 cut(s) | 87, 653, 735, 803 |
| BstV1I | GCAGC | 8 cut(s) | 48, 101, 194, 375, 639, 661, 1001, 1375 |
| BstV2I | GAAGAC | 1 cut(s) | 392 |
| Bsu36I | CCTNAGG | 1 cut(s) | 275 |
| BsuI | GTATCC | 1 cut(s) | 184 |
| BtgI | CCRYGG | 3 cut(s) | 109, 1074, 1290 |
| BtsCI | GGATG | 3 cut(s) | 349, 973, 1252 |
| BtsIMutI | CAGTG | 3 cut(s) | 513, 569, 1031 |
| BveI | ACCTGC | 4 cut(s) | 217, 796, 831, 1356 |
| Cac8I | GCNNGC | 4 cut(s) | 177, 690, 705, 1374 |
| CaiI | CAGNNNCTG | 1 cut(s) | 207 |
| CciI | TCATGA | 1 cut(s) | 16 |
| CfoI | GCGC | 2 cut(s) | 226, 973 |
| Cfr10I | RCCGGY | 1 cut(s) | 32 |
| Cfr13I | GGNCC | 2 cut(s) | 747, 820 |
| CseI | GACGC | 1 cut(s) | 213 |
| Csp6I | GTAC | 4 cut(s) | 84, 598, 732, 1323 |
| CviQI | GTAC | 4 cut(s) | 84, 598, 732, 1323 |
| DdeI | CTNAG | 4 cut(s) | 275, 436, 879, 912 |
| DpnI | GATC | 4 cut(s) | 197, 324, 408, 902 |
| DpnII | GATC | 4 cut(s) | 195, 322, 406, 900 |
| DraI | TTTAAA | 2 cut(s) | 28, 1381 |
| DraIII | CACNNNGTG | 1 cut(s) | 1241 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1013 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1013 |
| Eam1104I | CTCTTC | 2 cut(s) | 490, 1134 |
| EarI | CTCTTC | 2 cut(s) | 490, 1134 |
| Eco130I | CCWWGG | 4 cut(s) | 109, 180, 1074, 1290 |
| Eco47I | GGWCC | 2 cut(s) | 747, 820 |
| Eco81I | CCTNAGG | 1 cut(s) | 275 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 278, 708 |
| EcoO109I | RGGNCCY | 1 cut(s) | 820 |
| EcoRI | GAATTC | 1 cut(s) | 1285 |
| EcoRII | CCWGG | 3 cut(s) | 339, 443, 813 |
| EcoT14I | CCWWGG | 4 cut(s) | 109, 180, 1074, 1290 |
| EcoT22I | ATGCAT | 1 cut(s) | 1320 |
| ErhI | CCWWGG | 4 cut(s) | 109, 180, 1074, 1290 |
| Esp3I | CGTCTC | 1 cut(s) | 828 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 867, 899, 1361, 1393 |
| FbaI | TGATCA | 1 cut(s) | 322 |
| FblI | GTMKAC | 1 cut(s) | 417 |
| Fnu4HI | GCNGC | 8 cut(s) | 37, 115, 208, 389, 650, 653, 990, 1364 |
| FokI | GGATG | 3 cut(s) | 356, 980, 1259 |
| Fsp4HI | GCNGC | 8 cut(s) | 37, 115, 208, 389, 650, 653, 990, 1364 |
| FspBI | CTAG | 2 cut(s) | 593, 1062 |
| GlaI | GCGC | 2 cut(s) | 225, 972 |
| GluI | GCNGC | 8 cut(s) | 37, 115, 208, 389, 650, 653, 990, 1364 |
| GsaI | CCCAGC | 1 cut(s) | 920 |
| GsuI | CTGGAG | 2 cut(s) | 1132, 1376 |
| HapII | CCGG | 1 cut(s) | 33 |
| HgaI | GACGC | 1 cut(s) | 213 |
| HhaI | GCGC | 2 cut(s) | 226, 973 |
| Hin6I | GCGC | 2 cut(s) | 224, 971 |
| HinP1I | GCGC | 2 cut(s) | 224, 971 |
| HindIII | AAGCTT | 4 cut(s) | 526, 881, 930, 1370 |
| HinfI | GANTC | 5 cut(s) | 104, 251, 366, 587, 1135 |
| HpaII | CCGG | 1 cut(s) | 33 |
| Hpy166II | GTNNAC | 1 cut(s) | 418 |
| Hpy188I | TCNGA | 7 cut(s) | 203, 355, 371, 751, 780, 858, 1134 |
| Hpy188III | TCNNGA | 9 cut(s) | 17, 124, 260, 363, 377, 404, 584, 593, 1355 |
| Hpy8I | GTNNAC | 1 cut(s) | 418 |
| HpyAV | CCTTC | 5 cut(s) | 544, 766, 915, 1080, 1194 |
| HpyCH4III | ACNGT | 6 cut(s) | 133, 142, 736, 839, 1026, 1239 |
| HpyCH4IV | ACGT | 1 cut(s) | 44 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 230, 694, 922, 1369 |
| HpyF3I | CTNAG | 4 cut(s) | 275, 436, 879, 912 |
| HpySE526I | ACGT | 1 cut(s) | 44 |
| HspAI | GCGC | 2 cut(s) | 224, 971 |
| Ksp22I | TGATCA | 1 cut(s) | 322 |
| Kzo9I | GATC | 4 cut(s) | 195, 322, 406, 900 |
| LmnI | GCTCC | 3 cut(s) | 169, 333, 1113 |
| Lsp1109I | GCAGC | 8 cut(s) | 48, 101, 194, 375, 639, 661, 1001, 1375 |
| LweI | GCATC | 6 cut(s) | 675, 752, 958, 1027, 1205, 1305 |
| MaeI | CTAG | 2 cut(s) | 593, 1062 |
| MaeII | ACGT | 1 cut(s) | 44 |
| MaeIII | GTNAC | 1 cut(s) | 490 |
| MalI | GATC | 4 cut(s) | 197, 324, 408, 902 |
| MboI | GATC | 4 cut(s) | 195, 322, 406, 900 |
| MboII | GAAGA | 4 cut(s) | 392, 477, 629, 1121 |
| MfeI | CAATTG | 1 cut(s) | 698 |
| MhlI | GDGCHC | 1 cut(s) | 633 |
| MlyI | GAGTC | 1 cut(s) | 581 |
| MmeI | TCCRAC | 3 cut(s) | 269, 692, 774 |
| Mph1103I | ATGCAT | 1 cut(s) | 1320 |
| MroXI | GAANNNNTTC | 1 cut(s) | 554 |
| MseI | TTAA | 7 cut(s) | 27, 426, 953, 1338, 1368, 1380, 1399 |
| MslI | CAYNNNNRTG | 2 cut(s) | 626, 1295 |
| MspA1I | CMGCKG | 1 cut(s) | 652 |
| MspCI | CTTAAG | 1 cut(s) | 1367 |
| MspI | CCGG | 1 cut(s) | 33 |
| MspR9I | CCNGG | 3 cut(s) | 341, 445, 815 |
| MunI | CAATTG | 1 cut(s) | 698 |
| MvaI | CCWGG | 3 cut(s) | 341, 445, 815 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 230, 694, 922, 1369 |
| NcoI | CCATGG | 3 cut(s) | 109, 1074, 1290 |
| NdeII | GATC | 4 cut(s) | 195, 322, 406, 900 |
| NlaIV | GGNNCC | 3 cut(s) | 152, 271, 442 |
| NmeAIII | GCCGAG | 1 cut(s) | 259 |
| NsiI | ATGCAT | 1 cut(s) | 1320 |
| NspI | RCATGY | 2 cut(s) | 1004, 1126 |
| PagI | TCATGA | 1 cut(s) | 16 |
| PdmI | GAANNNNTTC | 1 cut(s) | 554 |
| PfeI | GAWTC | 4 cut(s) | 104, 251, 366, 1135 |
| PfoI | TCCNGGA | 1 cut(s) | 339 |
| PkrI | GCNGC | 8 cut(s) | 38, 116, 209, 390, 651, 654, 991, 1365 |
| PleI | GAGTC | 1 cut(s) | 581 |
| PpsI | GAGTC | 1 cut(s) | 581 |
| PpuMI | RGGWCCY | 1 cut(s) | 820 |
| Psp5II | RGGWCCY | 1 cut(s) | 820 |
| Psp6I | CCWGG | 3 cut(s) | 339, 443, 813 |
| PspFI | CCCAGC | 1 cut(s) | 916 |
| PspGI | CCWGG | 3 cut(s) | 339, 443, 813 |
| PspN4I | GGNNCC | 3 cut(s) | 152, 271, 442 |
| PspPI | GGNCC | 2 cut(s) | 747, 820 |
| PspPPI | RGGWCCY | 1 cut(s) | 820 |
| PstI | CTGCAG | 2 cut(s) | 657, 807 |
| PstNI | CAGNNNCTG | 1 cut(s) | 207 |
| PvuII | CAGCTG | 1 cut(s) | 652 |
| RsaI | GTAC | 4 cut(s) | 85, 599, 733, 1324 |
| RsaNI | GTAC | 4 cut(s) | 84, 598, 732, 1323 |
| RseI | CAYNNNNRTG | 2 cut(s) | 626, 1295 |
| SaqAI | TTAA | 7 cut(s) | 27, 426, 953, 1338, 1368, 1380, 1399 |
| SatI | GCNGC | 8 cut(s) | 37, 115, 208, 389, 650, 653, 990, 1364 |
| Sau3AI | GATC | 4 cut(s) | 195, 322, 406, 900 |
| Sau96I | GGNCC | 2 cut(s) | 747, 820 |
| SbfI | CCTGCAGG | 1 cut(s) | 807 |
| SchI | GAGTC | 1 cut(s) | 581 |
| ScrFI | CCNGG | 3 cut(s) | 341, 445, 815 |
| SdaI | CCTGCAGG | 1 cut(s) | 807 |
| SduI | GDGCHC | 1 cut(s) | 633 |
| SfaNI | GCATC | 6 cut(s) | 675, 752, 958, 1027, 1205, 1305 |
| SfcI | CTRYAG | 4 cut(s) | 87, 653, 735, 803 |
| SinI | GGWCC | 2 cut(s) | 747, 820 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 626, 1295 |
| SmlI | CTYRAG | 3 cut(s) | 377, 449, 1367 |
| SmoI | CTYRAG | 3 cut(s) | 377, 449, 1367 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 807 |
| SsiI | CCGC | 2 cut(s) | 755, 1169 |
| SspI | AATATT | 2 cut(s) | 24, 72 |
| SspMI | CTAG | 2 cut(s) | 593, 1062 |
| StyD4I | CCNGG | 3 cut(s) | 339, 443, 813 |
| StyI | CCWWGG | 4 cut(s) | 109, 180, 1074, 1290 |
| TaaI | ACNGT | 6 cut(s) | 133, 142, 736, 839, 1026, 1239 |
| TaiI | ACGT | 1 cut(s) | 47 |
| TaqI | TCGA | 2 cut(s) | 899, 1199 |
| TatI | WGTACW | 1 cut(s) | 597 |
| TfiI | GAWTC | 4 cut(s) | 104, 251, 366, 1135 |
| Tru1I | TTAA | 7 cut(s) | 27, 426, 953, 1338, 1368, 1380, 1399 |
| Tru9I | TTAA | 7 cut(s) | 27, 426, 953, 1338, 1368, 1380, 1399 |
| TscAI | CASTG | 3 cut(s) | 520, 569, 1031 |
| TseI | GCWGC | 8 cut(s) | 36, 114, 207, 388, 649, 652, 989, 1363 |
| TspDTI | ATGAA | 3 cut(s) | 33, 486, 531 |
| TspGWI | ACGGA | 2 cut(s) | 550, 1023 |
| TspRI | CASTG | 3 cut(s) | 520, 569, 1031 |
| Vha464I | CTTAAG | 1 cut(s) | 1367 |
| VpaK11BI | GGWCC | 2 cut(s) | 747, 820 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 278, 708 |
| XapI | RAATTY | 4 cut(s) | 52, 317, 1172, 1285 |
| XbaI | TCTAGA | 1 cut(s) | 592 |
| XceI | RCATGY | 2 cut(s) | 1004, 1126 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 183 |
| XmiI | GTMKAC | 1 cut(s) | 417 |
| XmnI | GAANNNNTTC | 1 cut(s) | 554 |
| XspI | CTAG | 2 cut(s) | 593, 1062 |
| Zsp2I | ATGCAT | 1 cut(s) | 1320 |