Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001894

Physical Location & Seq

Genomic Coordinates Forward (+)

1810542 .. 1811930

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g02680.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCAAAGAATAAGCAGTTGGGATTGGTGGGAATATGCGACTTCTTAAGACCCTTTTTGAATTATTCGATTTTAAGGATACCTTTCTCAGAGACTTCGGCCTTGTTTGCAAGGCATCTAATATCGTCGATGGCCTCTCTTTGTTGCTCAATTCCTCTTGATGCACTGCCTGTCTTGAAAATGTTGACGGAATCTCTCGTTTATGTTCCACTCAGTAATTCAGAAGATTTTAGGAATTTCATATATTTTGCGGAATGTATGGTCGATGCATATACAGTGGTTCTGAGGAATTTGGCTGGAACTGGATTGCTGATCGCTGAGGCTTATCACTGTGGTTTGGAACTGTTTGATAAAATTCTTTTAATTTCTTCAGCTGGCCACATGCACTCTGGTTTGATTGAGCCCGTAGTTGAAATGTCCAAGCACTTATTGATTACCCAGAAAGATATTGGGTTGCCTTATGTGCCTAAAGTATCATCAGCTATGCTTACGTTATTTATTATCCTCGTTCAGTCAGAGCTTGAGCATGACCAACTATCTACATTGAAACTTCTCCACCTTCTTTTGAAGTGGAAGTATGGAGATGATGTTGTTCACAGAAATGCATGTCTTCTGAGCGAGGAGCTTTTATTCATATTCCCTGTCATTAGCCTACTGTCATCTACTTCTAAATATATCAAAGGAGCAGCAACAGATGTGCTTGTCCTGTTACAAAAACTCTTAGTAACAGTTTTGATAGCACCAAAGGATAAACCAGCAATTGAAGCAGGATATCCATCTCTAAGCACACCTGGATCTATTGTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3730

Protein Analysis

270

Amino Acids

29.71

Weight (kDa)

6.23

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27670
fragaria_vesca	FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51542 FvH4_6g51551
malus_domestica	MD09G1028200.v1.1 MD17G1029800.v1.1
prunus_persica	Prupe.3G290300_v2.0.a1 Prupe.3G290500_v2.0.a1
pyrus_communis	pycom111g02210 pycom111g02220 pycom17g02680 pycom17g02700 pycom17g02710 pycom17g02720
rosa_chinensis	RchiOBHm_Chr2g0173001
rosa_laevigata	RLG00000022148
rosa_multiflora	Rmu_co8290889.1_g000001 Rmu_sc0012743.1_g000007 Rmu_sc0026490.1_g000001 Rmu_sc0032348.1_g000003
rosa_roxburghii	Rroxscaffold_2G00079360
rosa_rugosa	Rorug02G0248700 Rorug02G0366500 Rorug02G0564400 Rorug02G0564500 Rorug02G0564800 Rorug05G0265600.1
rosa_samantha	Rh2AG641000 Rh2AG641100 Rh2AG641600 Rh2AG643600 Rh2AG643800 Rh2BG654700 Rh2CG620000 Rh2DG668000 Rh2DG668100
rosa_wichuraiana	Rw2G052910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	1 cut(s)	802
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	3 cut(s)	235, 289, 354
AcuI	CTGAAG	1 cut(s)	354
AflII	CTTAAG	1 cut(s)	46
AgsI	TTSAA	6 cut(s)	61, 178, 413, 547, 568, 764
AjnI	CCWGG	1 cut(s)	790
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	4 cut(s)	374, 482, 520, 625
AluI	AGCT	4 cut(s)	374, 482, 520, 625
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	802
AoxI	GGCC	3 cut(s)	99, 132, 376
ApeKI	GCWGC	1 cut(s)	686
ApoI	RAATTY	3 cut(s)	235, 289, 354
BalI	TGGCCA	1 cut(s)	378
BanII	GRGCYC	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	602
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	698
BccI	CCATC	2 cut(s)	124, 784
BciT130I	CCWGG	1 cut(s)	792
BciVI	GTATCC	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	86
BfrI	CTTAAG	1 cut(s)	46
BfuI	GTATCC	1 cut(s)	72
BisI	GCNGC	1 cut(s)	687
BlsI	GCNGC	1 cut(s)	688
Bme1390I	CCNGG	1 cut(s)	792
BmrFI	CCNGG	1 cut(s)	792
BmsI	GCATC	3 cut(s)	124, 151, 256
BpiI	GAAGAC	1 cut(s)	602
Bpu10I	CCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	542
BsaBI	GATNNNNATC	1 cut(s)	775
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bse1I	ACTGG	1 cut(s)	307
Bse8I	GATNNNNATC	1 cut(s)	775
BseBI	CCWGG	1 cut(s)	792
BseJI	GATNNNNATC	1 cut(s)	775
BseMII	CTCAG	5 cut(s)	102, 226, 275, 309, 605
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	1 cut(s)	635
BseXI	GCAGC	1 cut(s)	698
BshFI	GGCC	3 cut(s)	101, 134, 378
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	3 cut(s)	101, 134, 378
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	2 cut(s)	312, 794
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	3 cut(s)	101, 134, 378
BspCNI	CTCAG	5 cut(s)	101, 225, 276, 310, 606
BspPI	GGATC	1 cut(s)	802
BspTI	CTTAAG	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	307
BssMI	GATC	2 cut(s)	312, 794
Bst2UI	CCWGG	1 cut(s)	792
Bst4CI	ACNGT	5 cut(s)	277, 332, 345, 657, 730
BstAFI	CTTAAG	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	7 cut(s)	88, 212, 284, 318, 614, 721, 782
BstKTI	GATC	2 cut(s)	315, 797
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	2 cut(s)	312, 794
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 463, 764
BstNI	CCWGG	1 cut(s)	792
BstNSI	RCATGY	2 cut(s)	385, 609
BstSCI	CCNGG	1 cut(s)	790
BstV1I	GCAGC	1 cut(s)	698
BstV2I	GAAGAC	1 cut(s)	602
BstX2I	RGATCY	1 cut(s)	794
BstYI	RGATCY	1 cut(s)	794
BsuI	GTATCC	1 cut(s)	72
BsuRI	GGCC	3 cut(s)	101, 134, 378
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	3 cut(s)	164, 282, 328
Cac8I	GCNNGC	1 cut(s)	376
CviAII	CATG	3 cut(s)	382, 527, 606
DdeI	CTNAG	7 cut(s)	88, 212, 284, 318, 614, 721, 782
DpnI	GATC	2 cut(s)	314, 796
DpnII	GATC	2 cut(s)	312, 794
EaeI	YGGCCR	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	405
Eco32I	GATATC	1 cut(s)	773
Eco57I	CTGAAG	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	790
EcoRV	GATATC	1 cut(s)	773
EcoT22I	ATGCAT	2 cut(s)	271, 607
EcoT38I	GRGCYC	1 cut(s)	405
FaeI	CATG	3 cut(s)	385, 530, 609
FalI	AAGNNNNNCTT	2 cut(s)	67, 99
FatI	CATG	3 cut(s)	381, 526, 605
Fnu4HI	GCNGC	1 cut(s)	687
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	1 cut(s)	687
GluI	GCNGC	1 cut(s)	687
HaeIII	GGCC	3 cut(s)	101, 134, 378
Hin1II	CATG	3 cut(s)	385, 530, 609
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	1 cut(s)	191
Hpy166II	GTNNAC	2 cut(s)	186, 595
Hpy188I	TCNGA	5 cut(s)	91, 223, 285, 517, 615
Hpy188III	TCNNGA	2 cut(s)	158, 175
Hpy8I	GTNNAC	2 cut(s)	186, 595
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	569
HpyCH4III	ACNGT	5 cut(s)	277, 332, 345, 657, 730
HpyCH4IV	ACGT	1 cut(s)	491
HpyCH4V	TGCA	5 cut(s)	110, 164, 269, 385, 605
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 463, 764
HpyF3I	CTNAG	7 cut(s)	88, 212, 284, 318, 614, 721, 782
HpySE526I	ACGT	1 cut(s)	491
Hsp92II	CATG	3 cut(s)	385, 530, 609
Kzo9I	GATC	2 cut(s)	312, 794
LmnI	GCTCC	2 cut(s)	622, 683
Lsp1109I	GCAGC	1 cut(s)	698
LweI	GCATC	3 cut(s)	124, 151, 256
MaeII	ACGT	1 cut(s)	491
MaeIII	GTNAC	2 cut(s)	708, 724
MalI	GATC	2 cut(s)	314, 796
MboI	GATC	2 cut(s)	312, 794
MboII	GAAGA	3 cut(s)	236, 360, 602
MfeI	CAATTG	1 cut(s)	759
MflI	RGATCY	1 cut(s)	794
MhlI	GDGCHC	1 cut(s)	405
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	8 cut(s)	61, 150, 217, 235, 289, 354, 363, 759
MluNI	TGGCCA	1 cut(s)	378
MnlI	CCTC	6 cut(s)	145, 165, 279, 313, 515, 613
Mox20I	TGGCCA	1 cut(s)	378
Mph1103I	ATGCAT	2 cut(s)	271, 607
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	4 cut(s)	47, 74, 362, 808
MslI	CAYNNNNRTG	1 cut(s)	600
Msp20I	TGGCCA	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	374
MspCI	CTTAAG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	792
MunI	CAATTG	1 cut(s)	759
MvaI	CCWGG	1 cut(s)	792
MwoI	GCNNNNNNNGC	3 cut(s)	107, 463, 764
NdeII	GATC	2 cut(s)	312, 794
NlaIII	CATG	3 cut(s)	385, 530, 609
NsiI	ATGCAT	2 cut(s)	271, 607
NspI	RCATGY	2 cut(s)	385, 609
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	688
Psp6I	CCWGG	1 cut(s)	790
PspGI	CCWGG	1 cut(s)	790
PsuI	RGATCY	1 cut(s)	794
PvuII	CAGCTG	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	600
SaqAI	TTAA	4 cut(s)	47, 74, 362, 808
SatI	GCNGC	1 cut(s)	687
Sau3AI	GATC	2 cut(s)	312, 794
ScrFI	CCNGG	1 cut(s)	792
SduI	GDGCHC	1 cut(s)	405
SetI	ASST	8 cut(s)	85, 376, 484, 494, 522, 561, 627, 793
SfaNI	GCATC	3 cut(s)	124, 151, 256
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	2 cut(s)	46, 521
SmoI	CTYRAG	2 cut(s)	46, 521
Sse9I	AATT	8 cut(s)	61, 150, 217, 235, 289, 354, 363, 759
SsiI	CCGC	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	790
TaaI	ACNGT	5 cut(s)	277, 332, 345, 657, 730
TaiI	ACGT	1 cut(s)	494
TaqI	TCGA	3 cut(s)	68, 128, 264
TasI	AATT	8 cut(s)	61, 150, 217, 235, 289, 354, 363, 759
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	4 cut(s)	47, 74, 362, 808
Tru9I	TTAA	4 cut(s)	47, 74, 362, 808
TscAI	CASTG	3 cut(s)	171, 282, 335
TseI	GCWGC	1 cut(s)	686
TspDTI	ATGAA	2 cut(s)	229, 622
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	3 cut(s)	171, 282, 335
Vha464I	CTTAAG	1 cut(s)	46
XapI	RAATTY	3 cut(s)	235, 289, 354
XceI	RCATGY	2 cut(s)	385, 609
XcmI	CCANNNNNNNNNTGG	2 cut(s)	386, 446
Zsp2I	ATGCAT	2 cut(s)	271, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.