Encoded by
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G27670 |
| fragaria_vesca | FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51542 FvH4_6g51551 |
| malus_domestica | MD09G1028200.v1.1 MD17G1029800.v1.1 |
| prunus_persica | Prupe.3G290300_v2.0.a1 Prupe.3G290500_v2.0.a1 |
| pyrus_communis | pycom111g02210 pycom111g02220 pycom17g02680 pycom17g02700 pycom17g02710 pycom17g02720 |
| rosa_chinensis | RchiOBHm_Chr2g0173001 |
| rosa_laevigata | RLG00000022148 |
| rosa_multiflora | Rmu_co8290889.1_g000001 Rmu_sc0012743.1_g000007 Rmu_sc0026490.1_g000001 Rmu_sc0032348.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00079360 |
| rosa_rugosa | Rorug02G0248700 Rorug02G0366500 Rorug02G0564400 Rorug02G0564500 Rorug02G0564800 Rorug05G0265600.1 |
| rosa_samantha | Rh2AG641000 Rh2AG641100 Rh2AG641600 Rh2AG643600 Rh2AG643800 Rh2BG654700 Rh2CG620000 Rh2DG668000 Rh2DG668100 |
| rosa_wichuraiana | Rw2G052910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3827 |
| Acc16I | TGCGCA | 1 cut(s) | 4643 |
| Acc36I | ACCTGC | 2 cut(s) | 3827, 4738 |
| AccB1I | GGYRCC | 2 cut(s) | 2807, 3883 |
| AccBSI | CCGCTC | 2 cut(s) | 1061, 3949 |
| AccI | GTMKAC | 4 cut(s) | 969, 1027, 1319, 2022 |
| AccII | CGCG | 5 cut(s) | 195, 246, 269, 2990, 5400 |
| AccIII | TCCGGA | 1 cut(s) | 603 |
| AcoI | YGGCCR | 1 cut(s) | 4879 |
| AcsI | RAATTY | 9 cut(s) | 444, 607, 1240, 2232, 2864, 4362, 4409, 4771, 4905 |
| AcuI | CTGAAG | 6 cut(s) | 554, 2100, 2112, 2415, 2570, 3588 |
| AcyI | GRCGYC | 2 cut(s) | 138, 506 |
| AfaI | GTAC | 7 cut(s) | 1287, 1443, 2292, 3265, 3374, 4465, 4682 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 1022, 1499, 1859, 2646, 2818, 4507, 5384 |
| AflII | CTTAAG | 1 cut(s) | 5456 |
| AflIII | ACRYGT | 2 cut(s) | 1048, 2953 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 564, 3133, 3616 |
| AjiI | CACGTC | 3 cut(s) | 4298, 4583, 5011 |
| AjnI | CCWGG | 9 cut(s) | 1165, 1718, 1982, 2146, 2256, 2415, 2461, 3083, 4535 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 275, 307, 458, 490, 4347, 4379, 4814, 4846 |
| AleI | CACNNNNGTG | 4 cut(s) | 1950, 3029, 3200, 4471 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 989, 1021, 1749, 1781 |
| Alw21I | GWGCWC | 6 cut(s) | 201, 261, 894, 1507, 2340, 3603 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3842 |
| Ama87I | CYCGRG | 3 cut(s) | 33, 893, 4676 |
| Aor13HI | TCCGGA | 1 cut(s) | 603 |
| AoxI | GGCC | 5 cut(s) | 2178, 2193, 3860, 4861, 4879 |
| ApoI | RAATTY | 9 cut(s) | 444, 607, 1240, 2232, 2864, 4362, 4409, 4771, 4905 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 222, 254, 1724, 1756 |
| AseI | ATTAAT | 1 cut(s) | 2936 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 293, 567, 2310, 2639, 4936 |
| AspLEI | GCGC | 5 cut(s) | 271, 3388, 4644, 5298, 5400 |
| AsuC2I | CCSGG | 3 cut(s) | 34, 35, 129 |
| AsuHPI | GGTGA | 4 cut(s) | 377, 2431, 3016, 5206 |
| AsuII | TTCGAA | 2 cut(s) | 287, 4048 |
| AvaI | CYCGRG | 3 cut(s) | 33, 893, 4676 |
| AvaII | GGWCC | 8 cut(s) | 38, 671, 1867, 2884, 3920, 4510, 5182, 5310 |
| BaeGI | GKGCMC | 1 cut(s) | 2812 |
| BalI | TGGCCA | 1 cut(s) | 4881 |
| BamHI | GGATCC | 3 cut(s) | 278, 1489, 3846 |
| BanI | GGYRCC | 2 cut(s) | 2807, 3883 |
| BanII | GRGCYC | 6 cut(s) | 201, 261, 894, 1507, 2770, 3603 |
| BbsI | GAAGAC | 3 cut(s) | 560, 3677, 4969 |
| Bbv12I | GWGCWC | 6 cut(s) | 201, 261, 894, 1507, 2340, 3603 |
| BbvCI | CCTCAGC | 2 cut(s) | 690, 2657 |
| BccI | CCATC | 7 cut(s) | 1480, 3550, 3652, 4509, 4871, 4949, 4991 |
| BceAI | ACGGC | 4 cut(s) | 50, 158, 238, 5133 |
| BciT130I | CCWGG | 9 cut(s) | 1167, 1720, 1984, 2148, 2258, 2417, 2463, 3085, 4537 |
| BclI | TGATCA | 2 cut(s) | 2962, 4003 |
| BcnI | CCSGG | 3 cut(s) | 34, 35, 129 |
| BfmI | CTRYAG | 2 cut(s) | 2019, 4233 |
| BfrI | CTTAAG | 1 cut(s) | 5456 |
| BfuAI | ACCTGC | 2 cut(s) | 3827, 4738 |
| BglII | AGATCT | 4 cut(s) | 1069, 2115, 2777, 3073 |
| Bme18I | GGWCC | 8 cut(s) | 38, 671, 1867, 2884, 3920, 4510, 5182, 5310 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 564, 3133, 3616 |
| BmeT110I | CYCGRG | 3 cut(s) | 33, 893, 4676 |
| BmgBI | CACGTC | 3 cut(s) | 4298, 4583, 5011 |
| BmrI | ACTGGG | 3 cut(s) | 142, 1508, 4288 |
| BmuI | ACTGGG | 3 cut(s) | 142, 1508, 4288 |
| BoxI | GACNNNNGTC | 1 cut(s) | 4089 |
| BpiI | GAAGAC | 3 cut(s) | 560, 3677, 4969 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1382, 1414, 1854, 1886, 3107, 3139 |
| BpmI | CTGGAG | 6 cut(s) | 44, 245, 275, 2174, 2279, 5173 |
| Bpu10I | CCTNAGC | 4 cut(s) | 690, 2657, 2892, 4807 |
| Bpu14I | TTCGAA | 2 cut(s) | 287, 4048 |
| BpuEI | CTTGAG | 5 cut(s) | 1356, 2578, 2926, 3183, 5465 |
| BpuMI | CCSGG | 3 cut(s) | 34, 35, 129 |
| Bsa29I | ATCGAT | 2 cut(s) | 1328, 5361 |
| BsaAI | YACGTR | 1 cut(s) | 3179 |
| BsaBI | GATNNNNATC | 2 cut(s) | 74, 4005 |
| BsaHI | GRCGYC | 2 cut(s) | 138, 506 |
| BsaI | GGTCTC | 1 cut(s) | 1718 |
| BsaWI | WCCGGW | 3 cut(s) | 330, 603, 761 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 1022, 1499, 1859, 2646, 2818, 4507, 5384 |
| Bse118I | RCCGGY | 1 cut(s) | 541 |
| Bse3DI | GCAATG | 5 cut(s) | 358, 543, 1413, 2076, 3375 |
| Bse8I | GATNNNNATC | 2 cut(s) | 74, 4005 |
| BseAI | TCCGGA | 1 cut(s) | 603 |
| BseBI | CCWGG | 9 cut(s) | 1167, 1720, 1984, 2148, 2258, 2417, 2463, 3085, 4537 |
| BseCI | ATCGAT | 2 cut(s) | 1328, 5361 |
| BseJI | GATNNNNATC | 2 cut(s) | 74, 4005 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 1022, 1499, 1859, 2646, 2818, 4507, 5384 |
| BseMI | GCAATG | 5 cut(s) | 358, 543, 1413, 2076, 3375 |
| BseRI | GAGGAG | 4 cut(s) | 1010, 1286, 4388, 5265 |
| BseSI | GKGCMC | 1 cut(s) | 2812 |
| BseYI | CCCAGC | 4 cut(s) | 3321, 3380, 3842, 4957 |
| BsgI | GTGCAG | 4 cut(s) | 458, 911, 2487, 3899 |
| Bsh1236I | CGCG | 5 cut(s) | 195, 246, 269, 2990, 5400 |
| BshFI | GGCC | 5 cut(s) | 2180, 2195, 3862, 4863, 4881 |
| BshNI | GGYRCC | 2 cut(s) | 2807, 3883 |
| BshVI | ATCGAT | 2 cut(s) | 1328, 5361 |
| BsiHKAI | GWGCWC | 6 cut(s) | 201, 261, 894, 1507, 2340, 3603 |
| BsiHKCI | CYCGRG | 3 cut(s) | 33, 893, 4676 |
| BsiSI | CCGG | 7 cut(s) | 34, 129, 331, 412, 542, 604, 762 |
| BslFI | GGGAC | 4 cut(s) | 24, 793, 3158, 5021 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 1022, 1499, 1859, 2646, 2818, 4507, 5384 |
| BsmBI | CGTCTC | 3 cut(s) | 129, 513, 4598 |
| BsmFI | GGGAC | 4 cut(s) | 24, 793, 3158, 5021 |
| BsmI | GAATGC | 4 cut(s) | 2302, 2563, 3533, 5407 |
| BsnI | GGCC | 5 cut(s) | 2180, 2195, 3862, 4863, 4881 |
| Bso31I | GGTCTC | 1 cut(s) | 1718 |
| BsoBI | CYCGRG | 3 cut(s) | 33, 893, 4676 |
| Bsp119I | TTCGAA | 2 cut(s) | 287, 4048 |
| Bsp1286I | GDGCHC | 8 cut(s) | 201, 261, 894, 1507, 2340, 2770, 2812, 3603 |
| Bsp13I | TCCGGA | 1 cut(s) | 603 |
| Bsp1407I | TGTACA | 1 cut(s) | 3372 |
| Bsp19I | CCATGG | 2 cut(s) | 2301, 5379 |
| Bsp68I | TCGCGA | 2 cut(s) | 195, 2990 |
| BspANI | GGCC | 5 cut(s) | 2180, 2195, 3862, 4863, 4881 |
| BspDI | ATCGAT | 2 cut(s) | 1328, 5361 |
| BspEI | TCCGGA | 1 cut(s) | 603 |
| BspFNI | CGCG | 5 cut(s) | 195, 246, 269, 2990, 5400 |
| BspMI | ACCTGC | 2 cut(s) | 3827, 4738 |
| BspQI | GCTCTTC | 2 cut(s) | 341, 2775 |
| BspT104I | TTCGAA | 2 cut(s) | 287, 4048 |
| BspT107I | GGYRCC | 2 cut(s) | 2807, 3883 |
| BspTI | CTTAAG | 1 cut(s) | 5456 |
| BspTNI | GGTCTC | 1 cut(s) | 1718 |
| BsrBI | CCGCTC | 2 cut(s) | 1061, 3949 |
| BsrDI | GCAATG | 5 cut(s) | 358, 543, 1413, 2076, 3375 |
| BsrFI | RCCGGY | 1 cut(s) | 541 |
| BsrGI | TGTACA | 1 cut(s) | 3372 |
| BssAI | RCCGGY | 1 cut(s) | 541 |
| BssNAI | GTATAC | 1 cut(s) | 1320 |
| BssNI | GRCGYC | 2 cut(s) | 138, 506 |
| BssT1I | CCWWGG | 5 cut(s) | 2196, 2301, 2512, 4065, 5379 |
| Bst1107I | GTATAC | 1 cut(s) | 1320 |
| Bst2UI | CCWGG | 9 cut(s) | 1167, 1720, 1984, 2148, 2258, 2417, 2463, 3085, 4537 |
| Bst6I | CTCTTC | 4 cut(s) | 127, 341, 2188, 2775 |
| BstACI | GRCGYC | 2 cut(s) | 138, 506 |
| BstAFI | CTTAAG | 1 cut(s) | 5456 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3765 |
| BstAUI | TGTACA | 1 cut(s) | 3372 |
| BstBAI | YACGTR | 1 cut(s) | 3179 |
| BstBI | TTCGAA | 2 cut(s) | 287, 4048 |
| BstDSI | CCRYGG | 4 cut(s) | 244, 2301, 5115, 5379 |
| BstFNI | CGCG | 5 cut(s) | 195, 246, 269, 2990, 5400 |
| BstHHI | GCGC | 5 cut(s) | 271, 3388, 4644, 5298, 5400 |
| BstNI | CCWGG | 9 cut(s) | 1167, 1720, 1984, 2148, 2258, 2417, 2463, 3085, 4537 |
| BstNSI | RCATGY | 7 cut(s) | 1052, 1691, 2006, 2957, 3719, 5045, 5353 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 4089 |
| BstSFI | CTRYAG | 2 cut(s) | 2019, 4233 |
| BstSLI | GKGCMC | 1 cut(s) | 2812 |
| BstSNI | TACGTA | 1 cut(s) | 3179 |
| BstUI | CGCG | 5 cut(s) | 195, 246, 269, 2990, 5400 |
| BstV2I | GAAGAC | 3 cut(s) | 560, 3677, 4969 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1296 |
| BstZ17I | GTATAC | 1 cut(s) | 1320 |
| Bsu15I | ATCGAT | 2 cut(s) | 1328, 5361 |
| BsuRI | GGCC | 5 cut(s) | 2180, 2195, 3862, 4863, 4881 |
| BsuTUI | ATCGAT | 2 cut(s) | 1328, 5361 |
| BtgI | CCRYGG | 4 cut(s) | 244, 2301, 5115, 5379 |
| BtgZI | GCGATG | 2 cut(s) | 432, 2776 |
| BtrI | CACGTC | 3 cut(s) | 4298, 4583, 5011 |
| BtsI | GCAGTG | 1 cut(s) | 1452 |
| BtuMI | TCGCGA | 2 cut(s) | 195, 2990 |
| BveI | ACCTGC | 2 cut(s) | 3827, 4738 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3842 |
| CfoI | GCGC | 5 cut(s) | 271, 3388, 4644, 5298, 5400 |
| Cfr10I | RCCGGY | 1 cut(s) | 541 |
| Cfr42I | CCGCGG | 1 cut(s) | 247 |
| Cfr9I | CCCGGG | 1 cut(s) | 33 |
| ClaI | ATCGAT | 2 cut(s) | 1328, 5361 |
| CseI | GACGC | 3 cut(s) | 146, 495, 2084 |
| CsiI | ACCWGGT | 1 cut(s) | 2461 |
| Csp6I | GTAC | 7 cut(s) | 1286, 1442, 2291, 3264, 3373, 4464, 4681 |
| CviQI | GTAC | 7 cut(s) | 1286, 1442, 2291, 3264, 3373, 4464, 4681 |
| DraI | TTTAAA | 1 cut(s) | 1239 |
| DriI | GACNNNNNGTC | 3 cut(s) | 564, 3133, 3616 |
| EaeI | YGGCCR | 1 cut(s) | 4879 |
| Eam1104I | CTCTTC | 4 cut(s) | 127, 341, 2188, 2775 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 564, 3133, 3616 |
| EarI | CTCTTC | 4 cut(s) | 127, 341, 2188, 2775 |
| EciI | GGCGGA | 2 cut(s) | 85, 4850 |
| Ecl136II | GAGCTC | 5 cut(s) | 199, 259, 892, 1505, 3601 |
| Eco105I | TACGTA | 1 cut(s) | 3179 |
| Eco130I | CCWWGG | 5 cut(s) | 2196, 2301, 2512, 4065, 5379 |
| Eco147I | AGGCCT | 2 cut(s) | 2195, 3862 |
| Eco24I | GRGCYC | 6 cut(s) | 201, 261, 894, 1507, 2770, 3603 |
| Eco31I | GGTCTC | 1 cut(s) | 1718 |
| Eco32I | GATATC | 2 cut(s) | 2668, 3193 |
| Eco47I | GGWCC | 8 cut(s) | 38, 671, 1867, 2884, 3920, 4510, 5182, 5310 |
| Eco53kI | GAGCTC | 5 cut(s) | 199, 259, 892, 1505, 3601 |
| Eco57I | CTGAAG | 6 cut(s) | 554, 2100, 2112, 2415, 2570, 3588 |
| Eco88I | CYCGRG | 3 cut(s) | 33, 893, 4676 |
| EcoICRI | GAGCTC | 5 cut(s) | 199, 259, 892, 1505, 3601 |
| EcoO109I | RGGNCCY | 4 cut(s) | 38, 2178, 3920, 4861 |
| EcoRI | GAATTC | 2 cut(s) | 4362, 4771 |
| EcoRII | CCWGG | 9 cut(s) | 1165, 1718, 1982, 2146, 2256, 2415, 2461, 3083, 4535 |
| EcoRV | GATATC | 2 cut(s) | 2668, 3193 |
| EcoT14I | CCWWGG | 5 cut(s) | 2196, 2301, 2512, 4065, 5379 |
| EcoT22I | ATGCAT | 6 cut(s) | 643, 1811, 3671, 4182, 4706, 5409 |
| EcoT38I | GRGCYC | 6 cut(s) | 201, 261, 894, 1507, 2770, 3603 |
| ErhI | CCWWGG | 5 cut(s) | 2196, 2301, 2512, 4065, 5379 |
| Esp3I | CGTCTC | 3 cut(s) | 129, 513, 4598 |
| FaqI | GGGAC | 4 cut(s) | 24, 793, 3158, 5021 |
| FauI | CCCGC | 1 cut(s) | 178 |
| FauNDI | CATATG | 4 cut(s) | 2332, 3438, 4591, 5003 |
| FbaI | TGATCA | 2 cut(s) | 2962, 4003 |
| FblI | GTMKAC | 4 cut(s) | 969, 1027, 1319, 2022 |
| FriOI | GRGCYC | 6 cut(s) | 201, 261, 894, 1507, 2770, 3603 |
| FspI | TGCGCA | 1 cut(s) | 4643 |
| GlaI | GCGC | 5 cut(s) | 270, 3387, 4643, 5297, 5399 |
| GsaI | CCCAGC | 4 cut(s) | 3325, 3384, 3846, 4961 |
| GsuI | CTGGAG | 6 cut(s) | 44, 245, 275, 2174, 2279, 5173 |
| HaeIII | GGCC | 5 cut(s) | 2180, 2195, 3862, 4863, 4881 |
| HapII | CCGG | 7 cut(s) | 34, 129, 331, 412, 542, 604, 762 |
| HgaI | GACGC | 3 cut(s) | 146, 495, 2084 |
| HhaI | GCGC | 5 cut(s) | 271, 3388, 4644, 5298, 5400 |
| Hin1I | GRCGYC | 2 cut(s) | 138, 506 |
| Hin6I | GCGC | 5 cut(s) | 269, 3386, 4642, 5296, 5398 |
| HinP1I | GCGC | 5 cut(s) | 269, 3386, 4642, 5296, 5398 |
| HincII | GTYRAC | 4 cut(s) | 558, 1336, 3823, 4084 |
| HindII | GTYRAC | 4 cut(s) | 558, 1336, 3823, 4084 |
| HindIII | AAGCTT | 2 cut(s) | 4160, 5459 |
| HpaI | GTTAAC | 1 cut(s) | 3823 |
| HpaII | CCGG | 7 cut(s) | 34, 129, 331, 412, 542, 604, 762 |
| HphI | GGTGA | 4 cut(s) | 377, 2431, 3016, 5206 |
| Hpy99I | CGWCG | 5 cut(s) | 179, 182, 215, 221, 224 |
| HpyCH4IV | ACGT | 6 cut(s) | 914, 1962, 3178, 4297, 4582, 5010 |
| HpySE526I | ACGT | 6 cut(s) | 914, 1962, 3178, 4297, 4582, 5010 |
| Hsp92I | GRCGYC | 2 cut(s) | 138, 506 |
| HspAI | GCGC | 5 cut(s) | 269, 3386, 4642, 5296, 5398 |
| KflI | GGGWCCC | 1 cut(s) | 38 |
| Kpn2I | TCCGGA | 1 cut(s) | 603 |
| Ksp22I | TGATCA | 2 cut(s) | 2962, 4003 |
| KspAI | GTTAAC | 1 cut(s) | 3823 |
| KspI | CCGCGG | 1 cut(s) | 247 |
| LguI | GCTCTTC | 2 cut(s) | 341, 2775 |
| MabI | ACCWGGT | 1 cut(s) | 2461 |
| MaeII | ACGT | 6 cut(s) | 914, 1962, 3178, 4297, 4582, 5010 |
| MaeIII | GTNAC | 9 cut(s) | 1401, 2457, 2729, 2956, 3590, 4332, 4725, 5212, 5419 |
| MbiI | CCGCTC | 2 cut(s) | 1061, 3949 |
| MfeI | CAATTG | 4 cut(s) | 768, 4010, 4739, 5305 |
| MhlI | GDGCHC | 8 cut(s) | 201, 261, 894, 1507, 2340, 2770, 2812, 3603 |
| MlsI | TGGCCA | 1 cut(s) | 4881 |
| MluNI | TGGCCA | 1 cut(s) | 4881 |
| MlyI | GAGTC | 6 cut(s) | 107, 113, 389, 1363, 3116, 5262 |
| MmeI | TCCRAC | 3 cut(s) | 141, 4254, 4713 |
| Mox20I | TGGCCA | 1 cut(s) | 4881 |
| Mph1103I | ATGCAT | 6 cut(s) | 643, 1811, 3671, 4182, 4706, 5409 |
| MroI | TCCGGA | 1 cut(s) | 603 |
| MroXI | GAANNNNTTC | 5 cut(s) | 293, 567, 2310, 2639, 4936 |
| MscI | TGGCCA | 1 cut(s) | 4881 |
| MslI | CAYNNNNRTG | 7 cut(s) | 1668, 1814, 1950, 3029, 3200, 4471, 4709 |
| Msp20I | TGGCCA | 1 cut(s) | 4881 |
| MspA1I | CMGCKG | 4 cut(s) | 246, 2855, 3098, 5084 |
| MspCI | CTTAAG | 1 cut(s) | 5456 |
| MspI | CCGG | 7 cut(s) | 34, 129, 331, 412, 542, 604, 762 |
| MunI | CAATTG | 4 cut(s) | 768, 4010, 4739, 5305 |
| Mva1269I | GAATGC | 4 cut(s) | 2302, 2563, 3533, 5407 |
| MvaI | CCWGG | 9 cut(s) | 1167, 1720, 1984, 2148, 2258, 2417, 2463, 3085, 4537 |
| MvnI | CGCG | 5 cut(s) | 195, 246, 269, 2990, 5400 |
| NciI | CCSGG | 3 cut(s) | 34, 35, 129 |
| NcoI | CCATGG | 2 cut(s) | 2301, 5379 |
| NdeI | CATATG | 4 cut(s) | 2332, 3438, 4591, 5003 |
| NmeAIII | GCCGAG | 1 cut(s) | 1865 |
| NmuCI | GTSAC | 2 cut(s) | 2729, 5212 |
| NruI | TCGCGA | 2 cut(s) | 195, 2990 |
| NsbI | TGCGCA | 1 cut(s) | 4643 |
| NsiI | ATGCAT | 6 cut(s) | 643, 1811, 3671, 4182, 4706, 5409 |
| NspI | RCATGY | 7 cut(s) | 1052, 1691, 2006, 2957, 3719, 5045, 5353 |
| NspV | TTCGAA | 2 cut(s) | 287, 4048 |
| OliI | CACNNNNGTG | 4 cut(s) | 1950, 3029, 3200, 4471 |
| PaeI | GCATGC | 1 cut(s) | 3719 |
| PaeR7I | CTCGAG | 2 cut(s) | 893, 4676 |
| PaqCI | CACCTGC | 1 cut(s) | 3827 |
| PceI | AGGCCT | 2 cut(s) | 2195, 3862 |
| PciI | ACATGT | 2 cut(s) | 1048, 2953 |
| PciSI | GCTCTTC | 2 cut(s) | 341, 2775 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 216, 5367 |
| PctI | GAATGC | 4 cut(s) | 2302, 2563, 3533, 5407 |
| PdmI | GAANNNNTTC | 5 cut(s) | 293, 567, 2310, 2639, 4936 |
| PleI | GAGTC | 6 cut(s) | 107, 113, 388, 1363, 3116, 5261 |
| PpsI | GAGTC | 6 cut(s) | 107, 113, 388, 1363, 3116, 5261 |
| Ppu21I | YACGTR | 1 cut(s) | 3179 |
| PpuMI | RGGWCCY | 2 cut(s) | 38, 3920 |
| PscI | ACATGT | 2 cut(s) | 1048, 2953 |
| PshAI | GACNNNNGTC | 1 cut(s) | 4089 |
| PshBI | ATTAAT | 1 cut(s) | 2936 |
| Psp124BI | GAGCTC | 5 cut(s) | 201, 261, 894, 1507, 3603 |
| Psp5II | RGGWCCY | 2 cut(s) | 38, 3920 |
| Psp6I | CCWGG | 9 cut(s) | 1165, 1718, 1982, 2146, 2256, 2415, 2461, 3083, 4535 |
| PspFI | CCCAGC | 4 cut(s) | 3321, 3380, 3842, 4957 |
| PspGI | CCWGG | 9 cut(s) | 1165, 1718, 1982, 2146, 2256, 2415, 2461, 3083, 4535 |
| PspPPI | RGGWCCY | 2 cut(s) | 38, 3920 |
| PspXI | VCTCGAGB | 1 cut(s) | 893 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3414, 3446 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3842 |
| PvuII | CAGCTG | 2 cut(s) | 2855, 5084 |
| RruI | TCGCGA | 2 cut(s) | 195, 2990 |
| RsaI | GTAC | 7 cut(s) | 1287, 1443, 2292, 3265, 3374, 4465, 4682 |
| RsaNI | GTAC | 7 cut(s) | 1286, 1442, 2291, 3264, 3373, 4464, 4681 |
| RseI | CAYNNNNRTG | 7 cut(s) | 1668, 1814, 1950, 3029, 3200, 4471, 4709 |
| SacI | GAGCTC | 5 cut(s) | 201, 261, 894, 1507, 3603 |
| SacII | CCGCGG | 1 cut(s) | 247 |
| SapI | GCTCTTC | 2 cut(s) | 341, 2775 |
| SchI | GAGTC | 6 cut(s) | 107, 113, 389, 1363, 3116, 5262 |
| SduI | GDGCHC | 8 cut(s) | 201, 261, 894, 1507, 2340, 2770, 2812, 3603 |
| SexAI | ACCWGGT | 1 cut(s) | 2461 |
| SfcI | CTRYAG | 2 cut(s) | 2019, 4233 |
| Sfr274I | CTCGAG | 2 cut(s) | 893, 4676 |
| Sfr303I | CCGCGG | 1 cut(s) | 247 |
| SfuI | TTCGAA | 2 cut(s) | 287, 4048 |
| SgrBI | CCGCGG | 1 cut(s) | 247 |
| SinI | GGWCC | 8 cut(s) | 38, 671, 1867, 2884, 3920, 4510, 5182, 5310 |
| SlaI | CTCGAG | 2 cut(s) | 893, 4676 |
| SmaI | CCCGGG | 1 cut(s) | 35 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 1668, 1814, 1950, 3029, 3200, 4471, 4709 |
| SmlI | CTYRAG | 8 cut(s) | 893, 1371, 2593, 2941, 3198, 4676, 5444, 5456 |
| SmoI | CTYRAG | 8 cut(s) | 893, 1371, 2593, 2941, 3198, 4676, 5444, 5456 |
| SnaBI | TACGTA | 1 cut(s) | 3179 |
| SphI | GCATGC | 1 cut(s) | 3719 |
| SseBI | AGGCCT | 2 cut(s) | 2195, 3862 |
| SspI | AATATT | 2 cut(s) | 2602, 4987 |
| SstI | GAGCTC | 5 cut(s) | 201, 261, 894, 1507, 3603 |
| StuI | AGGCCT | 2 cut(s) | 2195, 3862 |
| StyI | CCWWGG | 5 cut(s) | 2196, 2301, 2512, 4065, 5379 |
| TaiI | ACGT | 6 cut(s) | 917, 1965, 3181, 4300, 4585, 5013 |
| TatI | WGTACW | 4 cut(s) | 2290, 3372, 4463, 4680 |
| TauI | GCSGC | 8 cut(s) | 207, 249, 1064, 2650, 3098, 3952, 4037, 5344 |
| TseFI | GTSAC | 2 cut(s) | 2729, 5212 |
| Tsp45I | GTSAC | 2 cut(s) | 2729, 5212 |
| TspGWI | ACGGA | 4 cut(s) | 2820, 3128, 3487, 5100 |
| TspMI | CCCGGG | 1 cut(s) | 33 |
| Vha464I | CTTAAG | 1 cut(s) | 5456 |
| VpaK11BI | GGWCC | 8 cut(s) | 38, 671, 1867, 2884, 3920, 4510, 5182, 5310 |
| VspI | ATTAAT | 1 cut(s) | 2936 |
| XapI | RAATTY | 9 cut(s) | 444, 607, 1240, 2232, 2864, 4362, 4409, 4771, 4905 |
| XbaI | TCTAGA | 2 cut(s) | 1459, 3310 |
| XceI | RCATGY | 7 cut(s) | 1052, 1691, 2006, 2957, 3719, 5045, 5353 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 818, 3584, 4275 |
| XhoI | CTCGAG | 2 cut(s) | 893, 4676 |
| XmaI | CCCGGG | 1 cut(s) | 33 |
| XmiI | GTMKAC | 4 cut(s) | 969, 1027, 1319, 2022 |
| XmnI | GAANNNNTTC | 5 cut(s) | 293, 567, 2310, 2639, 4936 |
| Zsp2I | ATGCAT | 6 cut(s) | 643, 1811, 3671, 4182, 4706, 5409 |