Encoded by
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G27670 |
| fragaria_vesca | FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51542 FvH4_6g51551 |
| malus_domestica | MD09G1028200.v1.1 MD17G1029800.v1.1 |
| prunus_persica | Prupe.3G290300_v2.0.a1 Prupe.3G290500_v2.0.a1 |
| pyrus_communis | pycom111g02210 pycom111g02220 pycom17g02680 pycom17g02700 pycom17g02710 pycom17g02720 |
| rosa_chinensis | RchiOBHm_Chr2g0173001 |
| rosa_laevigata | RLG00000022148 |
| rosa_multiflora | Rmu_co8290889.1_g000001 Rmu_sc0012743.1_g000007 Rmu_sc0026490.1_g000001 Rmu_sc0032348.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00079360 |
| rosa_rugosa | Rorug02G0248700 Rorug02G0366500 Rorug02G0564400 Rorug02G0564500 Rorug02G0564800 Rorug05G0265600.1 |
| rosa_samantha | Rh2AG641000 Rh2AG641100 Rh2AG641600 Rh2AG643600 Rh2AG643800 Rh2BG654700 Rh2CG620000 Rh2DG668000 Rh2DG668100 |
| rosa_wichuraiana | Rw2G052910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3905 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 299, 5114 |
| AatII | GACGTC | 1 cut(s) | 4040 |
| Acc16I | TGCGCA | 1 cut(s) | 4263 |
| Acc36I | ACCTGC | 4 cut(s) | 3905, 4897, 4932, 5505 |
| Acc65I | GGTACC | 1 cut(s) | 529 |
| AccB1I | GGYRCC | 4 cut(s) | 529, 3713, 4271, 4293 |
| AccI | GTMKAC | 3 cut(s) | 291, 3823, 4560 |
| AccII | CGCG | 2 cut(s) | 195, 240 |
| AcoI | YGGCCR | 1 cut(s) | 1896 |
| AcuI | CTGAAG | 9 cut(s) | 804, 1724, 2178, 2190, 2493, 2648, 2837, 2859, 4229 |
| AcyI | GRCGYC | 1 cut(s) | 4037 |
| AdeI | CACNNNGTG | 2 cut(s) | 2894, 5390 |
| AflII | CTTAAG | 3 cut(s) | 496, 523, 5516 |
| AflIII | ACRYGT | 4 cut(s) | 1617, 3031, 3811, 3936 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 118, 418 |
| AjiI | CACGTC | 2 cut(s) | 1797, 3190 |
| AjnI | CCWGG | 9 cut(s) | 1243, 2060, 2224, 2539, 3161, 3927, 4482, 4586, 4914 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2627, 2659, 4427, 4459 |
| Alw21I | GWGCWC | 8 cut(s) | 255, 1532, 1585, 2418, 2890, 3448, 3681, 4776 |
| Alw26I | GTCTC | 8 cut(s) | 368, 1119, 1411, 1446, 1796, 3543, 4241, 4658 |
| Alw44I | GTGCAC | 1 cut(s) | 2886 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 752, 1522, 3920, 4350 |
| Ama87I | CYCGRG | 1 cut(s) | 33 |
| AoxI | GGCC | 8 cut(s) | 277, 582, 1896, 2244, 2256, 2271, 2376, 3997 |
| ApaI | GGGCCC | 1 cut(s) | 4001 |
| ApaLI | GTGCAC | 1 cut(s) | 2886 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1802, 1834, 4924, 4956 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2388, 4697 |
| Asp718I | GGTACC | 1 cut(s) | 529 |
| AspLEI | GCGC | 2 cut(s) | 4264, 5074 |
| AsuC2I | CCSGG | 3 cut(s) | 34, 35, 129 |
| AsuHPI | GGTGA | 6 cut(s) | 371, 2213, 2509, 2746, 3188, 5266 |
| AsuII | TTCGAA | 2 cut(s) | 3851, 4126 |
| AvaI | CYCGRG | 1 cut(s) | 33 |
| AvaII | GGWCC | 5 cut(s) | 1945, 2331, 2962, 4921, 5242 |
| AxyI | CCTNAGG | 3 cut(s) | 2493, 2590, 4418 |
| BaeGI | GKGCMC | 3 cut(s) | 2890, 3466, 4001 |
| BamHI | GGATCC | 4 cut(s) | 1288, 1567, 3581, 3924 |
| BanI | GGYRCC | 4 cut(s) | 529, 3713, 4271, 4293 |
| BanII | GRGCYC | 5 cut(s) | 255, 855, 1585, 3681, 4001 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 98, 130 |
| BauI | CACGAG | 1 cut(s) | 209 |
| BbsI | GAAGAC | 4 cut(s) | 638, 2106, 2770, 4535 |
| Bbv12I | GWGCWC | 8 cut(s) | 255, 1532, 1585, 2418, 2890, 3448, 3681, 4776 |
| BbvCI | CCTCAGC | 1 cut(s) | 768 |
| BceAI | ACGGC | 2 cut(s) | 50, 1286 |
| BciT130I | CCWGG | 9 cut(s) | 1245, 2062, 2226, 2541, 3163, 3929, 4484, 4588, 4916 |
| BciVI | GTATCC | 1 cut(s) | 3951 |
| BclI | TGATCA | 2 cut(s) | 3495, 4465 |
| BcnI | CCSGG | 3 cut(s) | 34, 35, 129 |
| BcoDI | GTCTC | 8 cut(s) | 368, 1119, 1411, 1446, 1796, 3543, 4241, 4658 |
| BfmI | CTRYAG | 4 cut(s) | 1143, 3670, 4836, 4904 |
| BfrI | CTTAAG | 3 cut(s) | 496, 523, 5516 |
| BfuAI | ACCTGC | 4 cut(s) | 3905, 4897, 4932, 5505 |
| BfuI | GTATCC | 1 cut(s) | 3951 |
| BglII | AGATCT | 3 cut(s) | 1370, 2855, 3151 |
| BlpI | GCTNAGC | 2 cut(s) | 4980, 5258 |
| Bme18I | GGWCC | 5 cut(s) | 1945, 2331, 2962, 4921, 5242 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 118, 418 |
| BmeT110I | CYCGRG | 1 cut(s) | 33 |
| BmgBI | CACGTC | 2 cut(s) | 1797, 3190 |
| BmrI | ACTGGG | 1 cut(s) | 5377 |
| BmuI | ACTGGG | 1 cut(s) | 5377 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1423 |
| BpiI | GAAGAC | 4 cut(s) | 638, 2106, 2770, 4535 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1519, 1551 |
| BpmI | CTGGAG | 5 cut(s) | 44, 239, 2252, 5233, 5525 |
| Bpu10I | CCTNAGC | 4 cut(s) | 768, 1235, 2275, 4368 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 4980, 5258 |
| Bpu14I | TTCGAA | 2 cut(s) | 3851, 4126 |
| BpuEI | CTTGAG | 9 cut(s) | 629, 992, 1434, 2656, 3004, 3464, 4541, 4613, 4757 |
| BpuMI | CCSGG | 3 cut(s) | 34, 35, 129 |
| Bsa29I | ATCGAT | 1 cut(s) | 578 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1228, 4083 |
| BsaHI | GRCGYC | 1 cut(s) | 4037 |
| BsaI | GGTCTC | 2 cut(s) | 1796, 3543 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 36, 66, 149, 179, 237, 267 |
| Bse1I | ACTGG | 9 cut(s) | 256, 620, 757, 1305, 1471, 3073, 3831, 5270, 5372 |
| Bse21I | CCTNAGG | 3 cut(s) | 2493, 2590, 4418 |
| Bse3DI | GCAATG | 5 cut(s) | 352, 621, 2868, 4800, 5180 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1228, 4083 |
| BseBI | CCWGG | 9 cut(s) | 1245, 2062, 2226, 2541, 3163, 3929, 4484, 4588, 4916 |
| BseCI | ATCGAT | 1 cut(s) | 578 |
| BseJI | GATNNNNATC | 2 cut(s) | 1228, 4083 |
| BseMI | GCAATG | 5 cut(s) | 352, 621, 2868, 4800, 5180 |
| BseNI | ACTGG | 9 cut(s) | 256, 620, 757, 1305, 1471, 3073, 3831, 5270, 5372 |
| BseRI | GAGGAG | 8 cut(s) | 355, 1088, 3129, 4299, 4830, 4856, 5279, 5325 |
| BseSI | GKGCMC | 3 cut(s) | 2890, 3466, 4001 |
| BseYI | CCCAGC | 5 cut(s) | 169, 1522, 3458, 3920, 5017 |
| BsgI | GTGCAG | 2 cut(s) | 452, 2565 |
| Bsh1236I | CGCG | 2 cut(s) | 195, 240 |
| BshFI | GGCC | 8 cut(s) | 279, 584, 1898, 2246, 2258, 2273, 2378, 3999 |
| BshNI | GGYRCC | 4 cut(s) | 529, 3713, 4271, 4293 |
| BshVI | ATCGAT | 1 cut(s) | 578 |
| BsiHKAI | GWGCWC | 8 cut(s) | 255, 1532, 1585, 2418, 2890, 3448, 3681, 4776 |
| BsiHKCI | CYCGRG | 1 cut(s) | 33 |
| BsiSI | CCGG | 2 cut(s) | 34, 129 |
| BslFI | GGGAC | 1 cut(s) | 2608 |
| BsmAI | GTCTC | 8 cut(s) | 368, 1119, 1411, 1446, 1796, 3543, 4241, 4658 |
| BsmBI | CGTCTC | 1 cut(s) | 1119 |
| BsmFI | GGGAC | 1 cut(s) | 2608 |
| BsmI | GAATGC | 2 cut(s) | 1476, 3793 |
| BsnI | GGCC | 8 cut(s) | 279, 584, 1898, 2246, 2258, 2273, 2378, 3999 |
| Bso31I | GGTCTC | 2 cut(s) | 1796, 3543 |
| BsoBI | CYCGRG | 1 cut(s) | 33 |
| Bsp119I | TTCGAA | 2 cut(s) | 3851, 4126 |
| Bsp120I | GGGCCC | 1 cut(s) | 3997 |
| Bsp1407I | TGTACA | 2 cut(s) | 2617, 3450 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 4980, 5258 |
| Bsp19I | CCATGG | 3 cut(s) | 2379, 5175, 5439 |
| Bsp68I | TCGCGA | 1 cut(s) | 195 |
| BspANI | GGCC | 8 cut(s) | 279, 584, 1898, 2246, 2258, 2273, 2378, 3999 |
| BspDI | ATCGAT | 1 cut(s) | 578 |
| BspFNI | CGCG | 2 cut(s) | 195, 240 |
| BspHI | TCATGA | 1 cut(s) | 1357 |
| BspMAI | CTGCAG | 1 cut(s) | 4908 |
| BspMI | ACCTGC | 4 cut(s) | 3905, 4897, 4932, 5505 |
| BspT104I | TTCGAA | 2 cut(s) | 3851, 4126 |
| BspT107I | GGYRCC | 4 cut(s) | 529, 3713, 4271, 4293 |
| BspTI | CTTAAG | 3 cut(s) | 496, 523, 5516 |
| BspTNI | GGTCTC | 2 cut(s) | 1796, 3543 |
| BsrDI | GCAATG | 5 cut(s) | 352, 621, 2868, 4800, 5180 |
| BsrGI | TGTACA | 2 cut(s) | 2617, 3450 |
| BsrI | ACTGG | 9 cut(s) | 256, 620, 757, 1305, 1471, 3073, 3831, 5270, 5372 |
| BssNI | GRCGYC | 1 cut(s) | 4037 |
| BssSI | CACGAG | 1 cut(s) | 209 |
| BssT1I | CCWWGG | 6 cut(s) | 2247, 2379, 3132, 4323, 5175, 5439 |
| Bst2BI | CACGAG | 1 cut(s) | 209 |
| Bst2UI | CCWGG | 9 cut(s) | 1245, 2062, 2226, 2541, 3163, 3929, 4484, 4588, 4916 |
| Bst6I | CTCTTC | 7 cut(s) | 127, 2266, 2667, 2813, 2835, 4633, 5235 |
| BstACI | GRCGYC | 1 cut(s) | 4037 |
| BstAFI | CTTAAG | 3 cut(s) | 496, 523, 5516 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 913, 2153, 3470 |
| BstAUI | TGTACA | 2 cut(s) | 2617, 3450 |
| BstBI | TTCGAA | 2 cut(s) | 3851, 4126 |
| BstC8I | GCNNGC | 9 cut(s) | 197, 1155, 1596, 3129, 3772, 4025, 4791, 4806, 5523 |
| BstDSI | CCRYGG | 4 cut(s) | 369, 2379, 5175, 5439 |
| BstEII | GGTNACC | 1 cut(s) | 2219 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 4421 |
| BstFNI | CGCG | 2 cut(s) | 195, 240 |
| BstHHI | GCGC | 2 cut(s) | 4264, 5074 |
| BstMAI | GTCTC | 8 cut(s) | 368, 1119, 1411, 1446, 1796, 3543, 4241, 4658 |
| BstNI | CCWGG | 9 cut(s) | 1245, 2062, 2226, 2541, 3163, 3929, 4484, 4588, 4916 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1423 |
| BstPI | GGTNACC | 1 cut(s) | 2219 |
| BstSFI | CTRYAG | 4 cut(s) | 1143, 3670, 4836, 4904 |
| BstSLI | GKGCMC | 3 cut(s) | 2890, 3466, 4001 |
| BstUI | CGCG | 2 cut(s) | 195, 240 |
| BstV2I | GAAGAC | 4 cut(s) | 638, 2106, 2770, 4535 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3881, 5533 |
| Bsu15I | ATCGAT | 1 cut(s) | 578 |
| Bsu36I | CCTNAGG | 3 cut(s) | 2493, 2590, 4418 |
| BsuI | GTATCC | 1 cut(s) | 3951 |
| BsuRI | GGCC | 8 cut(s) | 279, 584, 1898, 2246, 2258, 2273, 2378, 3999 |
| BsuTUI | ATCGAT | 1 cut(s) | 578 |
| BtgI | CCRYGG | 4 cut(s) | 369, 2379, 5175, 5439 |
| BtgZI | GCGATG | 2 cut(s) | 2056, 4167 |
| BtrI | CACGTC | 2 cut(s) | 1797, 3190 |
| BtsI | GCAGTG | 2 cut(s) | 1530, 2699 |
| BtuMI | TCGCGA | 1 cut(s) | 195 |
| BveI | ACCTGC | 4 cut(s) | 3905, 4897, 4932, 5505 |
| Cac8I | GCNNGC | 9 cut(s) | 197, 1155, 1596, 3129, 3772, 4025, 4791, 4806, 5523 |
| CaiI | CAGNNNCTG | 4 cut(s) | 752, 1522, 3920, 4350 |
| CciI | TCATGA | 1 cut(s) | 1357 |
| CfoI | GCGC | 2 cut(s) | 4264, 5074 |
| Cfr9I | CCCGGG | 1 cut(s) | 33 |
| ClaI | ATCGAT | 1 cut(s) | 578 |
| CseI | GACGC | 2 cut(s) | 422, 4356 |
| CsiI | ACCWGGT | 1 cut(s) | 2539 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2180, 2215 |
| DraIII | CACNNNGTG | 2 cut(s) | 2894, 5390 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 299, 5114 |
| DriI | GACNNNNNGTC | 2 cut(s) | 118, 418 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 299, 5114 |
| EaeI | YGGCCR | 1 cut(s) | 1896 |
| Eam1104I | CTCTTC | 7 cut(s) | 127, 2266, 2667, 2813, 2835, 4633, 5235 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 118, 418 |
| EarI | CTCTTC | 7 cut(s) | 127, 2266, 2667, 2813, 2835, 4633, 5235 |
| EciI | GGCGGA | 1 cut(s) | 85 |
| Ecl136II | GAGCTC | 3 cut(s) | 253, 1583, 3679 |
| Eco130I | CCWWGG | 6 cut(s) | 2247, 2379, 3132, 4323, 5175, 5439 |
| Eco147I | AGGCCT | 1 cut(s) | 2273 |
| Eco24I | GRGCYC | 5 cut(s) | 255, 855, 1585, 3681, 4001 |
| Eco31I | GGTCTC | 2 cut(s) | 1796, 3543 |
| Eco32I | GATATC | 5 cut(s) | 232, 1226, 2292, 3397, 3989 |
| Eco47I | GGWCC | 5 cut(s) | 1945, 2331, 2962, 4921, 5242 |
| Eco53kI | GAGCTC | 3 cut(s) | 253, 1583, 3679 |
| Eco57I | CTGAAG | 9 cut(s) | 804, 1724, 2178, 2190, 2493, 2648, 2837, 2859, 4229 |
| Eco81I | CCTNAGG | 3 cut(s) | 2493, 2590, 4418 |
| Eco88I | CYCGRG | 1 cut(s) | 33 |
| Eco91I | GGTNACC | 1 cut(s) | 2219 |
| EcoICRI | GAGCTC | 3 cut(s) | 253, 1583, 3679 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 4421 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2256, 3998, 4921 |
| EcoO65I | GGTNACC | 1 cut(s) | 2219 |
| EcoRI | GAATTC | 5 cut(s) | 491, 667, 3611, 4072, 5434 |
| EcoRII | CCWGG | 9 cut(s) | 1243, 2060, 2224, 2539, 3161, 3927, 4482, 4586, 4914 |
| EcoRV | GATATC | 5 cut(s) | 232, 1226, 2292, 3397, 3989 |
| EcoT14I | CCWWGG | 6 cut(s) | 2247, 2379, 3132, 4323, 5175, 5439 |
| EcoT22I | ATGCAT | 5 cut(s) | 721, 1515, 1889, 4233, 5469 |
| EcoT38I | GRGCYC | 5 cut(s) | 255, 855, 1585, 3681, 4001 |
| ErhI | CCWWGG | 6 cut(s) | 2247, 2379, 3132, 4323, 5175, 5439 |
| Esp3I | CGTCTC | 1 cut(s) | 1119 |
| FaqI | GGGAC | 1 cut(s) | 2608 |
| FauI | CCCGC | 2 cut(s) | 233, 2604 |
| FauNDI | CATATG | 2 cut(s) | 2410, 3516 |
| FbaI | TGATCA | 2 cut(s) | 3495, 4465 |
| FblI | GTMKAC | 3 cut(s) | 291, 3823, 4560 |
| FriOI | GRGCYC | 5 cut(s) | 255, 855, 1585, 3681, 4001 |
| FspI | TGCGCA | 1 cut(s) | 4263 |
| GlaI | GCGC | 2 cut(s) | 4263, 5073 |
| GsaI | CCCAGC | 5 cut(s) | 173, 1526, 3462, 3924, 5021 |
| GsuI | CTGGAG | 5 cut(s) | 44, 239, 2252, 5233, 5525 |
| HaeIII | GGCC | 8 cut(s) | 279, 584, 1898, 2246, 2258, 2273, 2378, 3999 |
| HapII | CCGG | 2 cut(s) | 34, 129 |
| HgaI | GACGC | 2 cut(s) | 422, 4356 |
| HhaI | GCGC | 2 cut(s) | 4264, 5074 |
| Hin1I | GRCGYC | 1 cut(s) | 4037 |
| Hin6I | GCGC | 2 cut(s) | 4262, 5072 |
| HinP1I | GCGC | 2 cut(s) | 4262, 5072 |
| HincII | GTYRAC | 6 cut(s) | 181, 292, 636, 1048, 3934, 5080 |
| HindII | GTYRAC | 6 cut(s) | 181, 292, 636, 1048, 3934, 5080 |
| HindIII | AAGCTT | 6 cut(s) | 4211, 4669, 4719, 4982, 5031, 5519 |
| HpaI | GTTAAC | 1 cut(s) | 636 |
| HpaII | CCGG | 2 cut(s) | 34, 129 |
| HphI | GGTGA | 6 cut(s) | 371, 2213, 2509, 2746, 3188, 5266 |
| Hpy99I | CGWCG | 4 cut(s) | 52, 293, 416, 4042 |
| HpyCH4IV | ACGT | 6 cut(s) | 1362, 1796, 3189, 4037, 4266, 5082 |
| HpySE526I | ACGT | 6 cut(s) | 1362, 1796, 3189, 4037, 4266, 5082 |
| Hsp92I | GRCGYC | 1 cut(s) | 4037 |
| HspAI | GCGC | 2 cut(s) | 4262, 5072 |
| KpnI | GGTACC | 1 cut(s) | 533 |
| Ksp22I | TGATCA | 2 cut(s) | 3495, 4465 |
| KspAI | GTTAAC | 1 cut(s) | 636 |
| MabI | ACCWGGT | 1 cut(s) | 2539 |
| MaeII | ACGT | 6 cut(s) | 1362, 1796, 3189, 4037, 4266, 5082 |
| MfeI | CAATTG | 3 cut(s) | 2148, 4088, 4799 |
| MlyI | GAGTC | 8 cut(s) | 128, 212, 370, 428, 2243, 3377, 4724, 5291 |
| MmeI | TCCRAC | 5 cut(s) | 2625, 3971, 4412, 4521, 4875 |
| Mph1103I | ATGCAT | 5 cut(s) | 721, 1515, 1889, 4233, 5469 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2388, 4697 |
| MslI | CAYNNNNRTG | 6 cut(s) | 780, 1892, 2028, 2973, 3879, 4769 |
| MspA1I | CMGCKG | 3 cut(s) | 173, 824, 2837 |
| MspCI | CTTAAG | 3 cut(s) | 496, 523, 5516 |
| MspI | CCGG | 2 cut(s) | 34, 129 |
| MunI | CAATTG | 3 cut(s) | 2148, 4088, 4799 |
| Mva1269I | GAATGC | 2 cut(s) | 1476, 3793 |
| MvaI | CCWGG | 9 cut(s) | 1245, 2062, 2226, 2541, 3163, 3929, 4484, 4588, 4916 |
| MvnI | CGCG | 2 cut(s) | 195, 240 |
| NciI | CCSGG | 3 cut(s) | 34, 35, 129 |
| NcoI | CCATGG | 3 cut(s) | 2379, 5175, 5439 |
| NdeI | CATATG | 2 cut(s) | 2410, 3516 |
| NmeAIII | GCCGAG | 1 cut(s) | 4270 |
| NmuCI | GTSAC | 7 cut(s) | 211, 2219, 2235, 2522, 2807, 3363, 5272 |
| NruI | TCGCGA | 1 cut(s) | 195 |
| NsbI | TGCGCA | 1 cut(s) | 4263 |
| NsiI | ATGCAT | 5 cut(s) | 721, 1515, 1889, 4233, 5469 |
| NspV | TTCGAA | 2 cut(s) | 3851, 4126 |
| PagI | TCATGA | 1 cut(s) | 1357 |
| PaqCI | CACCTGC | 1 cut(s) | 3905 |
| PceI | AGGCCT | 1 cut(s) | 2273 |
| PciI | ACATGT | 4 cut(s) | 1617, 3031, 3811, 3936 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 297, 4272 |
| PctI | GAATGC | 2 cut(s) | 1476, 3793 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2388, 4697 |
| PfoI | TCCNGGA | 1 cut(s) | 4482 |
| PleI | GAGTC | 8 cut(s) | 127, 212, 370, 427, 2242, 3377, 4724, 5291 |
| PpsI | GAGTC | 8 cut(s) | 127, 212, 370, 427, 2242, 3377, 4724, 5291 |
| PpuMI | RGGWCCY | 1 cut(s) | 4921 |
| PscI | ACATGT | 4 cut(s) | 1617, 3031, 3811, 3936 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1423 |
| Psp124BI | GAGCTC | 3 cut(s) | 255, 1585, 3681 |
| Psp5II | RGGWCCY | 1 cut(s) | 4921 |
| Psp6I | CCWGG | 9 cut(s) | 1243, 2060, 2224, 2539, 3161, 3927, 4482, 4586, 4914 |
| PspEI | GGTNACC | 1 cut(s) | 2219 |
| PspFI | CCCAGC | 5 cut(s) | 169, 1522, 3458, 3920, 5017 |
| PspGI | CCWGG | 9 cut(s) | 1243, 2060, 2224, 2539, 3161, 3927, 4482, 4586, 4914 |
| PspOMI | GGGCCC | 1 cut(s) | 3997 |
| PspPPI | RGGWCCY | 1 cut(s) | 4921 |
| PstI | CTGCAG | 1 cut(s) | 4908 |
| PstNI | CAGNNNCTG | 4 cut(s) | 752, 1522, 3920, 4350 |
| PvuII | CAGCTG | 3 cut(s) | 173, 824, 2837 |
| RruI | TCGCGA | 1 cut(s) | 195 |
| RseI | CAYNNNNRTG | 6 cut(s) | 780, 1892, 2028, 2973, 3879, 4769 |
| SacI | GAGCTC | 3 cut(s) | 255, 1585, 3681 |
| SalI | GTCGAC | 1 cut(s) | 290 |
| SbfI | CCTGCAGG | 1 cut(s) | 4908 |
| SchI | GAGTC | 8 cut(s) | 128, 212, 370, 428, 2243, 3377, 4724, 5291 |
| SdaI | CCTGCAGG | 1 cut(s) | 4908 |
| SexAI | ACCWGGT | 1 cut(s) | 2539 |
| SfcI | CTRYAG | 4 cut(s) | 1143, 3670, 4836, 4904 |
| SfuI | TTCGAA | 2 cut(s) | 3851, 4126 |
| SinI | GGWCC | 5 cut(s) | 1945, 2331, 2962, 4921, 5242 |
| SmaI | CCCGGG | 1 cut(s) | 35 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 780, 1892, 2028, 2973, 3879, 4769 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 4908 |
| SseBI | AGGCCT | 1 cut(s) | 2273 |
| SspI | AATATT | 2 cut(s) | 2362, 2680 |
| SstI | GAGCTC | 3 cut(s) | 255, 1585, 3681 |
| StuI | AGGCCT | 1 cut(s) | 2273 |
| StyI | CCWWGG | 6 cut(s) | 2247, 2379, 3132, 4323, 5175, 5439 |
| TaiI | ACGT | 6 cut(s) | 1365, 1799, 3192, 4040, 4269, 5085 |
| TaqII | GACCGA | 1 cut(s) | 3531 |
| TatI | WGTACW | 6 cut(s) | 1395, 1646, 2368, 2617, 3450, 4740 |
| TauI | GCSGC | 3 cut(s) | 1901, 2728, 5404 |
| TseFI | GTSAC | 7 cut(s) | 211, 2219, 2235, 2522, 2807, 3363, 5272 |
| Tsp45I | GTSAC | 7 cut(s) | 211, 2219, 2235, 2522, 2807, 3363, 5272 |
| TspGWI | ACGGA | 5 cut(s) | 230, 386, 3230, 4693, 5124 |
| TspMI | CCCGGG | 1 cut(s) | 33 |
| Vha464I | CTTAAG | 3 cut(s) | 496, 523, 5516 |
| VneI | GTGCAC | 1 cut(s) | 2886 |
| VpaK11BI | GGWCC | 5 cut(s) | 1945, 2331, 2962, 4921, 5242 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 4421 |
| XbaI | TCTAGA | 1 cut(s) | 1537 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 896, 2083, 3662 |
| XmaI | CCCGGG | 1 cut(s) | 33 |
| XmiI | GTMKAC | 3 cut(s) | 291, 3823, 4560 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2388, 4697 |
| ZraI | GACGTC | 1 cut(s) | 4038 |
| Zsp2I | ATGCAT | 5 cut(s) | 721, 1515, 1889, 4233, 5469 |