Encoded by
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G27670 |
| fragaria_vesca | FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51542 FvH4_6g51551 |
| malus_domestica | MD09G1028200.v1.1 MD17G1029800.v1.1 |
| prunus_persica | Prupe.3G290300_v2.0.a1 Prupe.3G290500_v2.0.a1 |
| pyrus_communis | pycom111g02210 pycom111g02220 pycom17g02680 pycom17g02700 pycom17g02710 pycom17g02720 |
| rosa_chinensis | RchiOBHm_Chr2g0173001 |
| rosa_laevigata | RLG00000022148 |
| rosa_multiflora | Rmu_co8290889.1_g000001 Rmu_sc0012743.1_g000007 Rmu_sc0026490.1_g000001 Rmu_sc0032348.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00079360 |
| rosa_rugosa | Rorug02G0248700 Rorug02G0366500 Rorug02G0564400 Rorug02G0564500 Rorug02G0564800 Rorug05G0265600.1 |
| rosa_samantha | Rh2AG641000 Rh2AG641100 Rh2AG641600 Rh2AG643600 Rh2AG643800 Rh2BG654700 Rh2CG620000 Rh2DG668000 Rh2DG668100 |
| rosa_wichuraiana | Rw2G052910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 4034, 4304 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 434 |
| AatII | GACGTC | 2 cut(s) | 2199, 2729 |
| Acc16I | TGCGCA | 1 cut(s) | 3904 |
| Acc36I | ACCTGC | 3 cut(s) | 562, 4034, 4304 |
| AccI | GTMKAC | 5 cut(s) | 246, 315, 426, 2712, 3952 |
| AccII | CGCG | 5 cut(s) | 82, 167, 330, 375, 398 |
| AcoI | YGGCCR | 2 cut(s) | 961, 2025 |
| AcsI | RAATTY | 6 cut(s) | 419, 820, 874, 939, 3071, 3502 |
| AcuI | CTGAAG | 7 cut(s) | 939, 1853, 2307, 2319, 2502, 2622, 2966 |
| AcyI | GRCGYC | 2 cut(s) | 2196, 2726 |
| AdeI | CACNNNGTG | 1 cut(s) | 3023 |
| AfaI | GTAC | 5 cut(s) | 144, 786, 1526, 1660, 3581 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 1706, 1927, 2066, 2359, 2853, 4485, 4584 |
| AflII | CTTAAG | 3 cut(s) | 631, 658, 1444 |
| AflIII | ACRYGT | 2 cut(s) | 3160, 3940 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 777 |
| AjiI | CACGTC | 1 cut(s) | 3319 |
| AjnI | CCWGG | 5 cut(s) | 1375, 2353, 2668, 3290, 3894 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 587, 619 |
| AleI | CACNNNNGTG | 1 cut(s) | 2157 |
| Alw21I | GWGCWC | 4 cut(s) | 390, 1198, 2502, 2547 |
| Alw26I | GTCTC | 9 cut(s) | 503, 671, 785, 1581, 1925, 2308, 2902, 3437, 4304 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 4049, 4506 |
| Ama87I | CYCGRG | 1 cut(s) | 3681 |
| AoxI | GGCC | 9 cut(s) | 4, 38, 53, 717, 961, 2025, 2385, 2505, 3897 |
| ApaI | GGGCCC | 2 cut(s) | 8, 42 |
| ApoI | RAATTY | 6 cut(s) | 419, 820, 874, 939, 3071, 3502 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1931, 1963 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2517 |
| AspA2I | CCTAGG | 1 cut(s) | 4466 |
| AspLEI | GCGC | 3 cut(s) | 84, 400, 3905 |
| AsuC2I | CCSGG | 1 cut(s) | 264 |
| AsuHPI | GGTGA | 3 cut(s) | 2342, 2638, 2785 |
| AsuII | TTCGAA | 2 cut(s) | 3980, 4255 |
| AvaI | CYCGRG | 1 cut(s) | 3681 |
| AvaII | GGWCC | 8 cut(s) | 408, 1709, 2074, 3091, 3711, 3843, 4054, 4127 |
| AvrII | CCTAGG | 1 cut(s) | 4466 |
| AxyI | CCTNAGG | 1 cut(s) | 4579 |
| BaeGI | GKGCMC | 4 cut(s) | 8, 42, 3019, 3595 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2880, 2913 |
| BalI | TGGCCA | 1 cut(s) | 963 |
| BamHI | GGATCC | 2 cut(s) | 1420, 1696 |
| BanII | GRGCYC | 4 cut(s) | 8, 42, 390, 990 |
| BauI | CACGAG | 1 cut(s) | 344 |
| BbsI | GAAGAC | 1 cut(s) | 168 |
| Bbv12I | GWGCWC | 4 cut(s) | 390, 1198, 2502, 2547 |
| BbvCI | CCTCAGC | 1 cut(s) | 903 |
| BccI | CCATC | 6 cut(s) | 1369, 1466, 3046, 3111, 3757, 4221 |
| BceAI | ACGGC | 3 cut(s) | 183, 293, 732 |
| BciT130I | CCWGG | 5 cut(s) | 1377, 2355, 2670, 3292, 3896 |
| BciVI | GTATCC | 1 cut(s) | 657 |
| BclI | TGATCA | 1 cut(s) | 3169 |
| BcnI | CCSGG | 1 cut(s) | 264 |
| BcoDI | GTCTC | 9 cut(s) | 503, 671, 785, 1581, 1925, 2308, 2902, 3437, 4304 |
| BfaI | CTAG | 9 cut(s) | 1458, 1755, 2658, 2780, 2934, 2982, 3453, 4398, 4467 |
| BfmI | CTRYAG | 1 cut(s) | 3567 |
| BfrI | CTTAAG | 3 cut(s) | 631, 658, 1444 |
| BfuAI | ACCTGC | 3 cut(s) | 562, 4034, 4304 |
| BfuI | GTATCC | 1 cut(s) | 657 |
| BglII | AGATCT | 3 cut(s) | 1499, 2984, 3280 |
| BlnI | CCTAGG | 1 cut(s) | 4466 |
| BmcAI | AGTACT | 1 cut(s) | 1660 |
| Bme1390I | CCNGG | 6 cut(s) | 264, 1377, 2355, 2670, 3292, 3896 |
| Bme18I | GGWCC | 8 cut(s) | 408, 1709, 2074, 3091, 3711, 3843, 4054, 4127 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 777 |
| BmeT110I | CYCGRG | 1 cut(s) | 3681 |
| BmgBI | CACGTC | 1 cut(s) | 3319 |
| BmrFI | CCNGG | 6 cut(s) | 264, 1377, 2355, 2670, 3292, 3896 |
| BmrI | ACTGGG | 2 cut(s) | 1567, 2228 |
| BmuI | ACTGGG | 2 cut(s) | 1567, 2228 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1552, 4296 |
| BpiI | GAAGAC | 1 cut(s) | 168 |
| BpmI | CTGGAG | 5 cut(s) | 171, 177, 374, 404, 2381 |
| Bpu10I | CCTNAGC | 2 cut(s) | 903, 4524 |
| Bpu14I | TTCGAA | 2 cut(s) | 3980, 4255 |
| BpuEI | CTTGAG | 7 cut(s) | 764, 953, 1127, 1563, 2486, 3133, 3593 |
| BpuMI | CCSGG | 1 cut(s) | 264 |
| Bsa29I | ATCGAT | 2 cut(s) | 205, 323 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1360, 4212, 4572 |
| BsaHI | GRCGYC | 2 cut(s) | 2196, 2726 |
| BsaI | GGTCTC | 1 cut(s) | 1925 |
| BsaJI | CCNNGG | 7 cut(s) | 373, 2353, 2508, 3261, 3291, 4466, 4479 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 169, 199, 239, 269, 284, 314, 377, 407 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 1706, 1927, 2066, 2359, 2853, 4485, 4584 |
| Bse21I | CCTNAGG | 1 cut(s) | 4579 |
| Bse3DI | GCAATG | 6 cut(s) | 290, 487, 1683, 2283, 2997, 3582 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1360, 4212, 4572 |
| BseBI | CCWGG | 5 cut(s) | 1377, 2355, 2670, 3292, 3896 |
| BseCI | ATCGAT | 2 cut(s) | 205, 323 |
| BseDI | CCNNGG | 7 cut(s) | 373, 2353, 2508, 3261, 3291, 4466, 4479 |
| BseJI | GATNNNNATC | 3 cut(s) | 1360, 4212, 4572 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 1706, 1927, 2066, 2359, 2853, 4485, 4584 |
| BseMI | GCAATG | 6 cut(s) | 290, 487, 1683, 2283, 2997, 3582 |
| BseMII | CTCAG | 8 cut(s) | 860, 894, 1992, 3419, 3681, 4095, 4524, 4538 |
| BseRI | GAGGAG | 6 cut(s) | 490, 1220, 2777, 2890, 3258, 4407 |
| BseSI | GKGCMC | 4 cut(s) | 8, 42, 3019, 3595 |
| BseYI | CCCAGC | 3 cut(s) | 3539, 3587, 4049 |
| BsgI | GTGCAG | 4 cut(s) | 587, 1410, 2694, 4106 |
| Bsh1236I | CGCG | 5 cut(s) | 82, 167, 330, 375, 398 |
| BshFI | GGCC | 9 cut(s) | 6, 40, 55, 719, 963, 2027, 2387, 2507, 3899 |
| BshVI | ATCGAT | 2 cut(s) | 205, 323 |
| BsiHKAI | GWGCWC | 4 cut(s) | 390, 1198, 2502, 2547 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3681 |
| BsiSI | CCGG | 2 cut(s) | 264, 3885 |
| BslFI | GGGAC | 5 cut(s) | 1181, 1722, 2207, 2737, 3856 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 1706, 1927, 2066, 2359, 2853, 4485, 4584 |
| BsmAI | GTCTC | 9 cut(s) | 503, 671, 785, 1581, 1925, 2308, 2902, 3437, 4304 |
| BsmFI | GGGAC | 5 cut(s) | 1181, 1722, 2207, 2737, 3856 |
| BsmI | GAATGC | 1 cut(s) | 1605 |
| BsnI | GGCC | 9 cut(s) | 6, 40, 55, 719, 963, 2027, 2387, 2507, 3899 |
| Bso31I | GGTCTC | 1 cut(s) | 1925 |
| BsoBI | CYCGRG | 1 cut(s) | 3681 |
| Bsp119I | TTCGAA | 2 cut(s) | 3980, 4255 |
| Bsp120I | GGGCCC | 2 cut(s) | 4, 38 |
| Bsp1286I | GDGCHC | 9 cut(s) | 8, 42, 390, 990, 1198, 2502, 2547, 3019, 3595 |
| Bsp1407I | TGTACA | 1 cut(s) | 3579 |
| Bsp68I | TCGCGA | 1 cut(s) | 330 |
| BspANI | GGCC | 9 cut(s) | 6, 40, 55, 719, 963, 2027, 2387, 2507, 3899 |
| BspCNI | CTCAG | 8 cut(s) | 861, 895, 1993, 3418, 3682, 4094, 4525, 4537 |
| BspDI | ATCGAT | 2 cut(s) | 205, 323 |
| BspFNI | CGCG | 5 cut(s) | 82, 167, 330, 375, 398 |
| BspHI | TCATGA | 1 cut(s) | 4570 |
| BspMI | ACCTGC | 3 cut(s) | 562, 4034, 4304 |
| BspT104I | TTCGAA | 2 cut(s) | 3980, 4255 |
| BspTI | CTTAAG | 3 cut(s) | 631, 658, 1444 |
| BspTNI | GGTCTC | 1 cut(s) | 1925 |
| BsrDI | GCAATG | 6 cut(s) | 290, 487, 1683, 2283, 2997, 3582 |
| BsrGI | TGTACA | 1 cut(s) | 3579 |
| BssECI | CCNNGG | 7 cut(s) | 373, 2353, 2508, 3261, 3291, 4466, 4479 |
| BssNI | GRCGYC | 2 cut(s) | 2196, 2726 |
| BssSI | CACGAG | 1 cut(s) | 344 |
| BssT1I | CCWWGG | 4 cut(s) | 2508, 3261, 4466, 4479 |
| Bst2BI | CACGAG | 1 cut(s) | 344 |
| Bst2UI | CCWGG | 5 cut(s) | 1377, 2355, 2670, 3292, 3896 |
| Bst6I | CTCTTC | 6 cut(s) | 97, 130, 262, 2395, 2942, 2964 |
| BstACI | GRCGYC | 2 cut(s) | 2196, 2726 |
| BstAFI | CTTAAG | 3 cut(s) | 631, 658, 1444 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 577, 2282, 3599 |
| BstAUI | TGTACA | 1 cut(s) | 3579 |
| BstBI | TTCGAA | 2 cut(s) | 3980, 4255 |
| BstC8I | GCNNGC | 7 cut(s) | 53, 332, 488, 961, 1725, 2098, 3901 |
| BstDSI | CCRYGG | 1 cut(s) | 373 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 4582 |
| BstFNI | CGCG | 5 cut(s) | 82, 167, 330, 375, 398 |
| BstHHI | GCGC | 3 cut(s) | 84, 400, 3905 |
| BstMAI | GTCTC | 9 cut(s) | 503, 671, 785, 1581, 1925, 2308, 2902, 3437, 4304 |
| BstNI | CCWGG | 5 cut(s) | 1377, 2355, 2670, 3292, 3896 |
| BstNSI | RCATGY | 6 cut(s) | 970, 2016, 2753, 3164, 3944, 4069 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1552, 4296 |
| BstSCI | CCNGG | 6 cut(s) | 262, 1375, 2353, 2668, 3290, 3894 |
| BstSFI | CTRYAG | 1 cut(s) | 3567 |
| BstSLI | GKGCMC | 4 cut(s) | 8, 42, 3019, 3595 |
| BstUI | CGCG | 5 cut(s) | 82, 167, 330, 375, 398 |
| BstV2I | GAAGAC | 1 cut(s) | 168 |
| BstX2I | RGATCY | 7 cut(s) | 1379, 1420, 1499, 1696, 2113, 2984, 3280 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 4010 |
| BstYI | RGATCY | 7 cut(s) | 1379, 1420, 1499, 1696, 2113, 2984, 3280 |
| Bsu15I | ATCGAT | 2 cut(s) | 205, 323 |
| Bsu36I | CCTNAGG | 1 cut(s) | 4579 |
| BsuI | GTATCC | 1 cut(s) | 657 |
| BsuRI | GGCC | 9 cut(s) | 6, 40, 55, 719, 963, 2027, 2387, 2507, 3899 |
| BsuTUI | ATCGAT | 2 cut(s) | 205, 323 |
| BtgI | CCRYGG | 1 cut(s) | 373 |
| BtgZI | GCGATG | 1 cut(s) | 2185 |
| BtrI | CACGTC | 1 cut(s) | 3319 |
| BtsI | GCAGTG | 3 cut(s) | 150, 749, 2828 |
| BtsIMutI | CAGTG | 9 cut(s) | 150, 749, 867, 1427, 2828, 3002, 3195, 3383, 4089 |
| BtuMI | TCGCGA | 1 cut(s) | 330 |
| BveI | ACCTGC | 3 cut(s) | 562, 4034, 4304 |
| Cac8I | GCNNGC | 7 cut(s) | 53, 332, 488, 961, 1725, 2098, 3901 |
| CaiI | CAGNNNCTG | 2 cut(s) | 4049, 4506 |
| CciI | TCATGA | 1 cut(s) | 4570 |
| CfoI | GCGC | 3 cut(s) | 84, 400, 3905 |
| Cfr42I | CCGCGG | 1 cut(s) | 376 |
| ClaI | ATCGAT | 2 cut(s) | 205, 323 |
| CseI | GACGC | 3 cut(s) | 173, 1394, 4512 |
| CsiI | ACCWGGT | 1 cut(s) | 2668 |
| Csp6I | GTAC | 5 cut(s) | 143, 785, 1525, 1659, 3580 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2309, 2344 |
| CviQI | GTAC | 5 cut(s) | 143, 785, 1525, 1659, 3580 |
| DraIII | CACNNNGTG | 1 cut(s) | 3023 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 434 |
| DriI | GACNNNNNGTC | 1 cut(s) | 777 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 434 |
| EaeI | YGGCCR | 2 cut(s) | 961, 2025 |
| Eam1104I | CTCTTC | 6 cut(s) | 97, 130, 262, 2395, 2942, 2964 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 777 |
| EarI | CTCTTC | 6 cut(s) | 97, 130, 262, 2395, 2942, 2964 |
| EciI | GGCGGA | 2 cut(s) | 220, 400 |
| Ecl136II | GAGCTC | 1 cut(s) | 388 |
| Eco130I | CCWWGG | 4 cut(s) | 2508, 3261, 4466, 4479 |
| Eco147I | AGGCCT | 1 cut(s) | 2507 |
| Eco24I | GRGCYC | 4 cut(s) | 8, 42, 390, 990 |
| Eco31I | GGTCTC | 1 cut(s) | 1925 |
| Eco32I | GATATC | 3 cut(s) | 1358, 2421, 3526 |
| Eco47I | GGWCC | 8 cut(s) | 408, 1709, 2074, 3091, 3711, 3843, 4054, 4127 |
| Eco53kI | GAGCTC | 1 cut(s) | 388 |
| Eco57I | CTGAAG | 7 cut(s) | 939, 1853, 2307, 2319, 2502, 2622, 2966 |
| Eco81I | CCTNAGG | 1 cut(s) | 4579 |
| Eco88I | CYCGRG | 1 cut(s) | 3681 |
| EcoICRI | GAGCTC | 1 cut(s) | 388 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 4582 |
| EcoO109I | RGGNCCY | 7 cut(s) | 5, 1709, 2385, 3711, 3843, 4054, 4127 |
| EcoRI | GAATTC | 1 cut(s) | 3502 |
| EcoRII | CCWGG | 5 cut(s) | 1375, 2353, 2668, 3290, 3894 |
| EcoRV | GATATC | 3 cut(s) | 1358, 2421, 3526 |
| EcoT14I | CCWWGG | 4 cut(s) | 2508, 3261, 4466, 4479 |
| EcoT22I | ATGCAT | 3 cut(s) | 856, 1644, 2018 |
| EcoT38I | GRGCYC | 4 cut(s) | 8, 42, 390, 990 |
| ErhI | CCWWGG | 4 cut(s) | 2508, 3261, 4466, 4479 |
| FaqI | GGGAC | 5 cut(s) | 1181, 1722, 2207, 2737, 3856 |
| FauI | CCCGC | 7 cut(s) | 44, 87, 160, 313, 368, 380, 4394 |
| FauNDI | CATATG | 1 cut(s) | 3645 |
| FbaI | TGATCA | 1 cut(s) | 3169 |
| FblI | GTMKAC | 5 cut(s) | 246, 315, 426, 2712, 3952 |
| FriOI | GRGCYC | 4 cut(s) | 8, 42, 390, 990 |
| FspBI | CTAG | 9 cut(s) | 1458, 1755, 2658, 2780, 2934, 2982, 3453, 4398, 4467 |
| FspI | TGCGCA | 1 cut(s) | 3904 |
| GlaI | GCGC | 3 cut(s) | 83, 399, 3904 |
| GsaI | CCCAGC | 3 cut(s) | 3543, 3591, 4053 |
| GsuI | CTGGAG | 5 cut(s) | 171, 177, 374, 404, 2381 |
| HaeIII | GGCC | 9 cut(s) | 6, 40, 55, 719, 963, 2027, 2387, 2507, 3899 |
| HapII | CCGG | 2 cut(s) | 264, 3885 |
| HgaI | GACGC | 3 cut(s) | 173, 1394, 4512 |
| HhaI | GCGC | 3 cut(s) | 84, 400, 3905 |
| Hin1I | GRCGYC | 2 cut(s) | 2196, 2726 |
| Hin6I | GCGC | 3 cut(s) | 82, 398, 3903 |
| HinP1I | GCGC | 3 cut(s) | 82, 398, 3903 |
| HincII | GTYRAC | 6 cut(s) | 316, 427, 714, 1543, 1677, 4291 |
| HindII | GTYRAC | 6 cut(s) | 316, 427, 714, 1543, 1677, 4291 |
| HindIII | AAGCTT | 2 cut(s) | 3856, 4367 |
| HpaII | CCGG | 2 cut(s) | 264, 3885 |
| HphI | GGTGA | 3 cut(s) | 2342, 2638, 2785 |
| Hpy99I | CGWCG | 4 cut(s) | 185, 314, 317, 428 |
| HpyAV | CCTTC | 6 cut(s) | 398, 1154, 1260, 1867, 2267, 3856 |
| HpyCH4IV | ACGT | 5 cut(s) | 2169, 2196, 2211, 2726, 3318 |
| HpySE526I | ACGT | 5 cut(s) | 2169, 2196, 2211, 2726, 3318 |
| Hsp92I | GRCGYC | 2 cut(s) | 2196, 2726 |
| HspAI | GCGC | 3 cut(s) | 82, 398, 3903 |
| Ksp22I | TGATCA | 1 cut(s) | 3169 |
| KspI | CCGCGG | 1 cut(s) | 376 |
| MabI | ACCWGGT | 1 cut(s) | 2668 |
| MaeI | CTAG | 9 cut(s) | 1458, 1755, 2658, 2780, 2934, 2982, 3453, 4398, 4467 |
| MaeII | ACGT | 5 cut(s) | 2169, 2196, 2211, 2726, 3318 |
| MfeI | CAATTG | 1 cut(s) | 4217 |
| MflI | RGATCY | 7 cut(s) | 1379, 1420, 1499, 1696, 2113, 2984, 3280 |
| MhlI | GDGCHC | 9 cut(s) | 8, 42, 390, 990, 1198, 2502, 2547, 3019, 3595 |
| MlsI | TGGCCA | 1 cut(s) | 963 |
| MluNI | TGGCCA | 1 cut(s) | 963 |
| MlyI | GAGTC | 5 cut(s) | 242, 248, 505, 563, 2372 |
| MmeI | TCCRAC | 3 cut(s) | 276, 537, 4100 |
| Mox20I | TGGCCA | 1 cut(s) | 963 |
| Mph1103I | ATGCAT | 3 cut(s) | 856, 1644, 2018 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2517 |
| MscI | TGGCCA | 1 cut(s) | 963 |
| MslI | CAYNNNNRTG | 4 cut(s) | 915, 2021, 2157, 4008 |
| Msp20I | TGGCCA | 1 cut(s) | 963 |
| MspA1I | CMGCKG | 4 cut(s) | 375, 506, 959, 3062 |
| MspCI | CTTAAG | 3 cut(s) | 631, 658, 1444 |
| MspI | CCGG | 2 cut(s) | 264, 3885 |
| MspR9I | CCNGG | 6 cut(s) | 264, 1377, 2355, 2670, 3292, 3896 |
| MunI | CAATTG | 1 cut(s) | 4217 |
| Mva1269I | GAATGC | 1 cut(s) | 1605 |
| MvaI | CCWGG | 5 cut(s) | 1377, 2355, 2670, 3292, 3896 |
| MvnI | CGCG | 5 cut(s) | 82, 167, 330, 375, 398 |
| NciI | CCSGG | 1 cut(s) | 264 |
| NdeI | CATATG | 1 cut(s) | 3645 |
| NmeAIII | GCCGAG | 1 cut(s) | 577 |
| NmuCI | GTSAC | 5 cut(s) | 346, 623, 2364, 2936, 3492 |
| NruI | TCGCGA | 1 cut(s) | 330 |
| NsbI | TGCGCA | 1 cut(s) | 3904 |
| NsiI | ATGCAT | 3 cut(s) | 856, 1644, 2018 |
| NspI | RCATGY | 6 cut(s) | 970, 2016, 2753, 3164, 3944, 4069 |
| NspV | TTCGAA | 2 cut(s) | 3980, 4255 |
| OliI | CACNNNNGTG | 1 cut(s) | 2157 |
| PagI | TCATGA | 1 cut(s) | 4570 |
| PaqCI | CACCTGC | 2 cut(s) | 4034, 4304 |
| PceI | AGGCCT | 1 cut(s) | 2507 |
| PciI | ACATGT | 2 cut(s) | 3160, 3940 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 202, 432, 2208 |
| PctI | GAATGC | 1 cut(s) | 1605 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2517 |
| PleI | GAGTC | 5 cut(s) | 242, 248, 505, 562, 2371 |
| PpsI | GAGTC | 5 cut(s) | 242, 248, 505, 562, 2371 |
| PpuMI | RGGWCCY | 5 cut(s) | 1709, 3711, 3843, 4054, 4127 |
| PscI | ACATGT | 2 cut(s) | 3160, 3940 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1552, 4296 |
| Psp124BI | GAGCTC | 1 cut(s) | 390 |
| Psp5II | RGGWCCY | 5 cut(s) | 1709, 3711, 3843, 4054, 4127 |
| Psp6I | CCWGG | 5 cut(s) | 1375, 2353, 2668, 3290, 3894 |
| PspFI | CCCAGC | 3 cut(s) | 3539, 3587, 4049 |
| PspGI | CCWGG | 5 cut(s) | 1375, 2353, 2668, 3290, 3894 |
| PspOMI | GGGCCC | 2 cut(s) | 4, 38 |
| PspPPI | RGGWCCY | 5 cut(s) | 1709, 3711, 3843, 4054, 4127 |
| PstNI | CAGNNNCTG | 2 cut(s) | 4049, 4506 |
| PsuI | RGATCY | 7 cut(s) | 1379, 1420, 1499, 1696, 2113, 2984, 3280 |
| PvuII | CAGCTG | 2 cut(s) | 959, 3062 |
| RruI | TCGCGA | 1 cut(s) | 330 |
| RsaI | GTAC | 5 cut(s) | 144, 786, 1526, 1660, 3581 |
| RsaNI | GTAC | 5 cut(s) | 143, 785, 1525, 1659, 3580 |
| RseI | CAYNNNNRTG | 4 cut(s) | 915, 2021, 2157, 4008 |
| SacI | GAGCTC | 1 cut(s) | 390 |
| SacII | CCGCGG | 1 cut(s) | 376 |
| SalI | GTCGAC | 2 cut(s) | 314, 425 |
| ScaI | AGTACT | 1 cut(s) | 1660 |
| SchI | GAGTC | 5 cut(s) | 242, 248, 505, 563, 2372 |
| ScrFI | CCNGG | 6 cut(s) | 264, 1377, 2355, 2670, 3292, 3896 |
| SduI | GDGCHC | 9 cut(s) | 8, 42, 390, 990, 1198, 2502, 2547, 3019, 3595 |
| SexAI | ACCWGGT | 1 cut(s) | 2668 |
| SfcI | CTRYAG | 1 cut(s) | 3567 |
| Sfr303I | CCGCGG | 1 cut(s) | 376 |
| SfuI | TTCGAA | 2 cut(s) | 3980, 4255 |
| SgrBI | CCGCGG | 1 cut(s) | 376 |
| SinI | GGWCC | 8 cut(s) | 408, 1709, 2074, 3091, 3711, 3843, 4054, 4127 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 915, 2021, 2157, 4008 |
| SseBI | AGGCCT | 1 cut(s) | 2507 |
| SspI | AATATT | 3 cut(s) | 2491, 2809, 3443 |
| SspMI | CTAG | 9 cut(s) | 1458, 1755, 2658, 2780, 2934, 2982, 3453, 4398, 4467 |
| SstI | GAGCTC | 1 cut(s) | 390 |
| StuI | AGGCCT | 1 cut(s) | 2507 |
| StyD4I | CCNGG | 6 cut(s) | 262, 1375, 2353, 2668, 3290, 3894 |
| StyI | CCWWGG | 4 cut(s) | 2508, 3261, 4466, 4479 |
| TaiI | ACGT | 5 cut(s) | 2172, 2199, 2214, 2729, 3321 |
| TatI | WGTACW | 3 cut(s) | 1524, 1658, 3579 |
| TauI | GCSGC | 2 cut(s) | 2030, 2857 |
| TscAI | CASTG | 9 cut(s) | 157, 756, 867, 1434, 2835, 3009, 3202, 3390, 4089 |
| TseFI | GTSAC | 5 cut(s) | 346, 623, 2364, 2936, 3492 |
| Tsp45I | GTSAC | 5 cut(s) | 346, 623, 2364, 2936, 3492 |
| TspGWI | ACGGA | 1 cut(s) | 3927 |
| TspRI | CASTG | 9 cut(s) | 157, 756, 867, 1434, 2835, 3009, 3202, 3390, 4089 |
| Vha464I | CTTAAG | 3 cut(s) | 631, 658, 1444 |
| VpaK11BI | GGWCC | 8 cut(s) | 408, 1709, 2074, 3091, 3711, 3843, 4054, 4127 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 4582 |
| XapI | RAATTY | 6 cut(s) | 419, 820, 874, 939, 3071, 3502 |
| XceI | RCATGY | 6 cut(s) | 970, 2016, 2753, 3164, 3944, 4069 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 971, 1031, 1690, 4482 |
| XmaJI | CCTAGG | 1 cut(s) | 4466 |
| XmiI | GTMKAC | 5 cut(s) | 246, 315, 426, 2712, 3952 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2517 |
| XspI | CTAG | 9 cut(s) | 1458, 1755, 2658, 2780, 2934, 2982, 3453, 4398, 4467 |
| ZraI | GACGTC | 2 cut(s) | 2197, 2727 |
| ZrmI | AGTACT | 1 cut(s) | 1660 |
| Zsp2I | ATGCAT | 3 cut(s) | 856, 1644, 2018 |