Encoded by
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G27670 |
| fragaria_vesca | FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51330 FvH4_6g51542 FvH4_6g51551 |
| malus_domestica | MD09G1028200.v1.1 MD17G1029800.v1.1 |
| prunus_persica | Prupe.3G290300_v2.0.a1 Prupe.3G290500_v2.0.a1 |
| pyrus_communis | pycom111g02210 pycom111g02220 pycom17g02680 pycom17g02700 pycom17g02710 pycom17g02720 |
| rosa_chinensis | RchiOBHm_Chr2g0173001 |
| rosa_laevigata | RLG00000022148 |
| rosa_multiflora | Rmu_co8290889.1_g000001 Rmu_sc0012743.1_g000007 Rmu_sc0026490.1_g000001 Rmu_sc0032348.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00079360 |
| rosa_rugosa | Rorug02G0248700 Rorug02G0366500 Rorug02G0564400 Rorug02G0564500 Rorug02G0564800 Rorug05G0265600.1 |
| rosa_samantha | Rh2AG641000 Rh2AG641100 Rh2AG641600 Rh2AG643600 Rh2AG643800 Rh2BG654700 Rh2CG620000 Rh2DG668000 Rh2DG668100 |
| rosa_wichuraiana | Rw2G052910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 3902, 4172 |
| AasI | GACNNNNNNGTC | 3 cut(s) | 299, 550, 1040 |
| AatII | GACGTC | 2 cut(s) | 2067, 2597 |
| Acc16I | TGCGCA | 1 cut(s) | 3772 |
| Acc36I | ACCTGC | 3 cut(s) | 427, 3902, 4172 |
| Acc65I | GGTACC | 1 cut(s) | 5492 |
| AccB1I | GGYRCC | 2 cut(s) | 4317, 5492 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 5078 |
| AccI | GTMKAC | 3 cut(s) | 111, 180, 291 |
| AccII | CGCG | 5 cut(s) | 34, 195, 240, 263, 5409 |
| AcoI | YGGCCR | 2 cut(s) | 826, 1893 |
| AcsI | RAATTY | 7 cut(s) | 284, 685, 739, 804, 1315, 2939, 3370 |
| AcuI | CTGAAG | 7 cut(s) | 804, 1721, 2175, 2187, 2370, 2490, 2834 |
| AcyI | GRCGYC | 2 cut(s) | 2064, 2594 |
| AdeI | CACNNNGTG | 1 cut(s) | 2891 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 1574, 1795, 1934, 2227, 2721, 4353, 4447, 5078 |
| AflII | CTTAAG | 3 cut(s) | 496, 523, 5537 |
| AflIII | ACRYGT | 3 cut(s) | 831, 3028, 3808 |
| AjiI | CACGTC | 1 cut(s) | 3187 |
| AjnI | CCWGG | 7 cut(s) | 1243, 2057, 2221, 2536, 3158, 4610, 4935 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 452, 484 |
| AleI | CACNNNNGTG | 1 cut(s) | 2025 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 5334, 5366 |
| Alw21I | GWGCWC | 4 cut(s) | 255, 2415, 4800, 5097 |
| Alw26I | GTCTC | 9 cut(s) | 368, 536, 650, 1449, 1793, 2176, 2770, 4172, 4682 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3917, 4374 |
| Ama87I | CYCGRG | 1 cut(s) | 5525 |
| AoxI | GGCC | 5 cut(s) | 276, 582, 826, 1893, 2373 |
| ApoI | RAATTY | 7 cut(s) | 284, 685, 739, 804, 1315, 2939, 3370 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1799, 1831 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2385 |
| Asp718I | GGTACC | 1 cut(s) | 5492 |
| AspA2I | CCTAGG | 1 cut(s) | 4334 |
| AspLEI | GCGC | 4 cut(s) | 265, 3773, 5203, 5409 |
| AsuC2I | CCSGG | 1 cut(s) | 129 |
| AsuHPI | GGTGA | 3 cut(s) | 2210, 2506, 5423 |
| AsuII | TTCGAA | 1 cut(s) | 4123 |
| AvaI | CYCGRG | 1 cut(s) | 5525 |
| AvaII | GGWCC | 8 cut(s) | 1577, 1942, 2959, 3579, 3711, 3922, 3995, 5263 |
| AvrII | CCTAGG | 1 cut(s) | 4334 |
| AxyI | CCTNAGG | 1 cut(s) | 4442 |
| BaeGI | GKGCMC | 2 cut(s) | 2887, 3463 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 2748, 2781, 5484, 5484, 5517, 5517 |
| BalI | TGGCCA | 1 cut(s) | 828 |
| BamHI | GGATCC | 2 cut(s) | 1288, 4436 |
| BanI | GGYRCC | 2 cut(s) | 4317, 5492 |
| BanII | GRGCYC | 2 cut(s) | 255, 855 |
| BauI | CACGAG | 1 cut(s) | 209 |
| BbsI | GAAGAC | 2 cut(s) | 35, 4559 |
| Bbv12I | GWGCWC | 4 cut(s) | 255, 2415, 4800, 5097 |
| BbvCI | CCTCAGC | 2 cut(s) | 768, 2732 |
| BceAI | ACGGC | 4 cut(s) | 50, 158, 5214, 5333 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4193, 4227 |
| BciT130I | CCWGG | 7 cut(s) | 1245, 2059, 2223, 2538, 3160, 4612, 4937 |
| BciVI | GTATCC | 1 cut(s) | 522 |
| BclI | TGATCA | 1 cut(s) | 3037 |
| BcnI | CCSGG | 1 cut(s) | 129 |
| BcoDI | GTCTC | 9 cut(s) | 368, 536, 650, 1449, 1793, 2176, 2770, 4172, 4682 |
| BfmI | CTRYAG | 3 cut(s) | 4639, 4758, 4860 |
| BfoI | RGCGCY | 1 cut(s) | 5204 |
| BfrI | CTTAAG | 3 cut(s) | 496, 523, 5537 |
| BfuAI | ACCTGC | 3 cut(s) | 427, 3902, 4172 |
| BfuI | GTATCC | 1 cut(s) | 522 |
| BglII | AGATCT | 5 cut(s) | 1367, 2852, 3148, 3817, 4585 |
| BlnI | CCTAGG | 1 cut(s) | 4334 |
| BlpI | GCTNAGC | 1 cut(s) | 5001 |
| BmcAI | AGTACT | 1 cut(s) | 1528 |
| Bme1390I | CCNGG | 8 cut(s) | 129, 1245, 2059, 2223, 2538, 3160, 4612, 4937 |
| Bme18I | GGWCC | 8 cut(s) | 1577, 1942, 2959, 3579, 3711, 3922, 3995, 5263 |
| BmeT110I | CYCGRG | 1 cut(s) | 5525 |
| BmgBI | CACGTC | 1 cut(s) | 3187 |
| BmrFI | CCNGG | 8 cut(s) | 129, 1245, 2059, 2223, 2538, 3160, 4612, 4937 |
| BmrI | ACTGGG | 1 cut(s) | 1435 |
| BmuI | ACTGGG | 1 cut(s) | 1435 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1420, 4164 |
| BpiI | GAAGAC | 2 cut(s) | 35, 4559 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1516, 1548 |
| BpmI | CTGGAG | 5 cut(s) | 38, 44, 239, 2249, 5254 |
| Bpu10I | CCTNAGC | 3 cut(s) | 768, 2732, 4392 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 5001 |
| Bpu14I | TTCGAA | 1 cut(s) | 4123 |
| BpuEI | CTTGAG | 9 cut(s) | 269, 629, 818, 992, 1431, 3001, 3461, 4565, 4637 |
| BpuMI | CCSGG | 1 cut(s) | 129 |
| Bsa29I | ATCGAT | 2 cut(s) | 1563, 2043 |
| BsaBI | GATNNNNATC | 3 cut(s) | 74, 1228, 4080 |
| BsaHI | GRCGYC | 2 cut(s) | 2064, 2594 |
| BsaI | GGTCTC | 1 cut(s) | 1793 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 36, 66, 104, 134, 149, 179 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 1574, 1795, 1934, 2227, 2721, 4353, 4447, 5078 |
| Bse21I | CCTNAGG | 1 cut(s) | 4442 |
| Bse3DI | GCAATG | 3 cut(s) | 352, 1551, 2865 |
| Bse8I | GATNNNNATC | 3 cut(s) | 74, 1228, 4080 |
| BseBI | CCWGG | 7 cut(s) | 1245, 2059, 2223, 2538, 3160, 4612, 4937 |
| BseCI | ATCGAT | 2 cut(s) | 1563, 2043 |
| BseJI | GATNNNNATC | 3 cut(s) | 74, 1228, 4080 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 1574, 1795, 1934, 2227, 2721, 4353, 4447, 5078 |
| BseMI | GCAATG | 3 cut(s) | 352, 1551, 2865 |
| BseRI | GAGGAG | 5 cut(s) | 355, 1088, 2758, 3126, 4275 |
| BseSI | GKGCMC | 2 cut(s) | 2887, 3463 |
| BseYI | CCCAGC | 4 cut(s) | 3407, 3455, 3917, 5038 |
| BsgI | GTGCAG | 4 cut(s) | 452, 2562, 3462, 3974 |
| Bsh1236I | CGCG | 5 cut(s) | 34, 195, 240, 263, 5409 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1491 |
| BshFI | GGCC | 5 cut(s) | 278, 584, 828, 1895, 2375 |
| BshNI | GGYRCC | 2 cut(s) | 4317, 5492 |
| BshVI | ATCGAT | 2 cut(s) | 1563, 2043 |
| BsiEI | CGRYCG | 1 cut(s) | 1491 |
| BsiHKAI | GWGCWC | 4 cut(s) | 255, 2415, 4800, 5097 |
| BsiHKCI | CYCGRG | 1 cut(s) | 5525 |
| BsiSI | CCGG | 1 cut(s) | 129 |
| BslFI | GGGAC | 7 cut(s) | 1046, 1590, 2075, 2605, 3724, 4285, 5336 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 1574, 1795, 1934, 2227, 2721, 4353, 4447, 5078 |
| BsmAI | GTCTC | 9 cut(s) | 368, 536, 650, 1449, 1793, 2176, 2770, 4172, 4682 |
| BsmFI | GGGAC | 7 cut(s) | 1046, 1590, 2075, 2605, 3724, 4285, 5336 |
| BsmI | GAATGC | 2 cut(s) | 1473, 4855 |
| BsnI | GGCC | 5 cut(s) | 278, 584, 828, 1895, 2375 |
| Bso31I | GGTCTC | 1 cut(s) | 1793 |
| BsoBI | CYCGRG | 1 cut(s) | 5525 |
| Bsp119I | TTCGAA | 1 cut(s) | 4123 |
| Bsp1286I | GDGCHC | 7 cut(s) | 255, 855, 2415, 2887, 3463, 4800, 5097 |
| Bsp1407I | TGTACA | 1 cut(s) | 3447 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 5001 |
| Bsp19I | CCATGG | 1 cut(s) | 5460 |
| Bsp68I | TCGCGA | 1 cut(s) | 195 |
| BspANI | GGCC | 5 cut(s) | 278, 584, 828, 1895, 2375 |
| BspDI | ATCGAT | 2 cut(s) | 1563, 2043 |
| BspFNI | CGCG | 5 cut(s) | 34, 195, 240, 263, 5409 |
| BspMI | ACCTGC | 3 cut(s) | 427, 3902, 4172 |
| BspT104I | TTCGAA | 1 cut(s) | 4123 |
| BspT107I | GGYRCC | 2 cut(s) | 4317, 5492 |
| BspTI | CTTAAG | 3 cut(s) | 496, 523, 5537 |
| BspTNI | GGTCTC | 1 cut(s) | 1793 |
| BsrDI | GCAATG | 3 cut(s) | 352, 1551, 2865 |
| BsrGI | TGTACA | 1 cut(s) | 3447 |
| BssNI | GRCGYC | 2 cut(s) | 2064, 2594 |
| BssSI | CACGAG | 1 cut(s) | 209 |
| BssT1I | CCWWGG | 5 cut(s) | 3129, 4334, 4347, 5054, 5460 |
| Bst2BI | CACGAG | 1 cut(s) | 209 |
| Bst2UI | CCWGG | 7 cut(s) | 1245, 2059, 2223, 2538, 3160, 4612, 4937 |
| Bst6I | CTCTTC | 4 cut(s) | 127, 2810, 2832, 4657 |
| BstACI | GRCGYC | 2 cut(s) | 2064, 2594 |
| BstAFI | CTTAAG | 3 cut(s) | 496, 523, 5537 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 442, 2891, 3467 |
| BstAUI | TGTACA | 1 cut(s) | 3447 |
| BstBI | TTCGAA | 1 cut(s) | 4123 |
| BstC8I | GCNNGC | 9 cut(s) | 197, 353, 636, 826, 1593, 1966, 3769, 5519, 5544 |
| BstDSI | CCRYGG | 3 cut(s) | 238, 5196, 5460 |
| BstEII | GGTNACC | 1 cut(s) | 4930 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 4445 |
| BstFNI | CGCG | 5 cut(s) | 34, 195, 240, 263, 5409 |
| BstH2I | RGCGCY | 1 cut(s) | 5204 |
| BstHHI | GCGC | 4 cut(s) | 265, 3773, 5203, 5409 |
| BstMAI | GTCTC | 9 cut(s) | 368, 536, 650, 1449, 1793, 2176, 2770, 4172, 4682 |
| BstMCI | CGRYCG | 1 cut(s) | 1491 |
| BstNI | CCWGG | 7 cut(s) | 1245, 2059, 2223, 2538, 3160, 4612, 4937 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1420, 4164 |
| BstPI | GGTNACC | 1 cut(s) | 4930 |
| BstSCI | CCNGG | 8 cut(s) | 127, 1243, 2057, 2221, 2536, 3158, 4610, 4935 |
| BstSFI | CTRYAG | 3 cut(s) | 4639, 4758, 4860 |
| BstSLI | GKGCMC | 2 cut(s) | 2887, 3463 |
| BstUI | CGCG | 5 cut(s) | 34, 195, 240, 263, 5409 |
| BstV2I | GAAGAC | 2 cut(s) | 35, 4559 |
| BstX2I | RGATCY | 9 cut(s) | 1247, 1288, 1367, 1981, 2852, 3148, 3817, 4436, 4585 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3878 |
| BstYI | RGATCY | 9 cut(s) | 1247, 1288, 1367, 1981, 2852, 3148, 3817, 4436, 4585 |
| Bsu15I | ATCGAT | 2 cut(s) | 1563, 2043 |
| Bsu36I | CCTNAGG | 1 cut(s) | 4442 |
| BsuI | GTATCC | 1 cut(s) | 522 |
| BsuRI | GGCC | 5 cut(s) | 278, 584, 828, 1895, 2375 |
| BsuTUI | ATCGAT | 2 cut(s) | 1563, 2043 |
| BtgI | CCRYGG | 3 cut(s) | 238, 5196, 5460 |
| BtgZI | GCGATG | 1 cut(s) | 2053 |
| BtrI | CACGTC | 1 cut(s) | 3187 |
| BtsI | GCAGTG | 5 cut(s) | 17, 155, 614, 2696, 3450 |
| BtuMI | TCGCGA | 1 cut(s) | 195 |
| BveI | ACCTGC | 3 cut(s) | 427, 3902, 4172 |
| Cac8I | GCNNGC | 9 cut(s) | 197, 353, 636, 826, 1593, 1966, 3769, 5519, 5544 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3917, 4374 |
| CfoI | GCGC | 4 cut(s) | 265, 3773, 5203, 5409 |
| Cfr42I | CCGCGG | 1 cut(s) | 241 |
| ClaI | ATCGAT | 2 cut(s) | 1563, 2043 |
| CseI | GACGC | 5 cut(s) | 40, 1262, 2531, 4380, 4828 |
| CsiI | ACCWGGT | 1 cut(s) | 2536 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2177, 2212 |
| DraI | TTTAAA | 1 cut(s) | 4737 |
| DraIII | CACNNNGTG | 1 cut(s) | 2891 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 299, 550, 1040 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 299, 550, 1040 |
| EaeI | YGGCCR | 2 cut(s) | 826, 1893 |
| Eam1104I | CTCTTC | 4 cut(s) | 127, 2810, 2832, 4657 |
| EarI | CTCTTC | 4 cut(s) | 127, 2810, 2832, 4657 |
| EciI | GGCGGA | 1 cut(s) | 85 |
| Ecl136II | GAGCTC | 1 cut(s) | 253 |
| Eco130I | CCWWGG | 5 cut(s) | 3129, 4334, 4347, 5054, 5460 |
| Eco24I | GRGCYC | 2 cut(s) | 255, 855 |
| Eco31I | GGTCTC | 1 cut(s) | 1793 |
| Eco32I | GATATC | 4 cut(s) | 1226, 2289, 3394, 5419 |
| Eco47I | GGWCC | 8 cut(s) | 1577, 1942, 2959, 3579, 3711, 3922, 3995, 5263 |
| Eco53kI | GAGCTC | 1 cut(s) | 253 |
| Eco57I | CTGAAG | 7 cut(s) | 804, 1721, 2175, 2187, 2370, 2490, 2834 |
| Eco81I | CCTNAGG | 1 cut(s) | 4442 |
| Eco88I | CYCGRG | 1 cut(s) | 5525 |
| Eco91I | GGTNACC | 1 cut(s) | 4930 |
| EcoICRI | GAGCTC | 1 cut(s) | 253 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 4445 |
| EcoO109I | RGGNCCY | 6 cut(s) | 1577, 2373, 3579, 3711, 3922, 3995 |
| EcoO65I | GGTNACC | 1 cut(s) | 4930 |
| EcoRI | GAATTC | 1 cut(s) | 3370 |
| EcoRII | CCWGG | 7 cut(s) | 1243, 2057, 2221, 2536, 3158, 4610, 4935 |
| EcoRV | GATATC | 4 cut(s) | 1226, 2289, 3394, 5419 |
| EcoT14I | CCWWGG | 5 cut(s) | 3129, 4334, 4347, 5054, 5460 |
| EcoT22I | ATGCAT | 4 cut(s) | 721, 1512, 1886, 5490 |
| EcoT38I | GRGCYC | 2 cut(s) | 255, 855 |
| ErhI | CCWWGG | 5 cut(s) | 3129, 4334, 4347, 5054, 5460 |
| FaqI | GGGAC | 7 cut(s) | 1046, 1590, 2075, 2605, 3724, 4285, 5336 |
| FauI | CCCGC | 5 cut(s) | 27, 178, 233, 245, 5430 |
| FauNDI | CATATG | 2 cut(s) | 3513, 4675 |
| FbaI | TGATCA | 1 cut(s) | 3037 |
| FblI | GTMKAC | 3 cut(s) | 111, 180, 291 |
| FriOI | GRGCYC | 2 cut(s) | 255, 855 |
| FspI | TGCGCA | 1 cut(s) | 3772 |
| GlaI | GCGC | 4 cut(s) | 264, 3772, 5202, 5408 |
| GsaI | CCCAGC | 4 cut(s) | 3411, 3459, 3921, 5042 |
| GsuI | CTGGAG | 5 cut(s) | 38, 44, 239, 2249, 5254 |
| HaeII | RGCGCY | 1 cut(s) | 5204 |
| HaeIII | GGCC | 5 cut(s) | 278, 584, 828, 1895, 2375 |
| HapII | CCGG | 1 cut(s) | 129 |
| HgaI | GACGC | 5 cut(s) | 40, 1262, 2531, 4380, 4828 |
| HhaI | GCGC | 4 cut(s) | 265, 3773, 5203, 5409 |
| Hin1I | GRCGYC | 2 cut(s) | 2064, 2594 |
| Hin6I | GCGC | 4 cut(s) | 263, 3771, 5201, 5407 |
| HinP1I | GCGC | 4 cut(s) | 263, 3771, 5201, 5407 |
| HincII | GTYRAC | 5 cut(s) | 181, 292, 1411, 1545, 4159 |
| HindII | GTYRAC | 5 cut(s) | 181, 292, 1411, 1545, 4159 |
| HindIII | AAGCTT | 4 cut(s) | 3724, 4235, 4693, 5540 |
| HpaII | CCGG | 1 cut(s) | 129 |
| HphI | GGTGA | 3 cut(s) | 2210, 2506, 5423 |
| Hpy99I | CGWCG | 7 cut(s) | 52, 179, 182, 293, 553, 556, 1046 |
| HpyCH4IV | ACGT | 6 cut(s) | 1041, 1128, 2037, 2064, 2594, 3186 |
| HpySE526I | ACGT | 6 cut(s) | 1041, 1128, 2037, 2064, 2594, 3186 |
| Hsp92I | GRCGYC | 2 cut(s) | 2064, 2594 |
| HspAI | GCGC | 4 cut(s) | 263, 3771, 5201, 5407 |
| KpnI | GGTACC | 1 cut(s) | 5496 |
| Ksp22I | TGATCA | 1 cut(s) | 3037 |
| KspI | CCGCGG | 1 cut(s) | 241 |
| MabI | ACCWGGT | 1 cut(s) | 2536 |
| MaeII | ACGT | 6 cut(s) | 1041, 1128, 2037, 2064, 2594, 3186 |
| MfeI | CAATTG | 2 cut(s) | 4085, 5386 |
| MflI | RGATCY | 9 cut(s) | 1247, 1288, 1367, 1981, 2852, 3148, 3817, 4436, 4585 |
| MhlI | GDGCHC | 7 cut(s) | 255, 855, 2415, 2887, 3463, 4800, 5097 |
| MlsI | TGGCCA | 1 cut(s) | 828 |
| MluNI | TGGCCA | 1 cut(s) | 828 |
| MlyI | GAGTC | 7 cut(s) | 107, 113, 212, 370, 428, 2240, 5312 |
| MmeI | TCCRAC | 6 cut(s) | 141, 402, 3192, 3968, 4436, 4851 |
| Mox20I | TGGCCA | 1 cut(s) | 828 |
| Mph1103I | ATGCAT | 4 cut(s) | 721, 1512, 1886, 5490 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2385 |
| MscI | TGGCCA | 1 cut(s) | 828 |
| MslI | CAYNNNNRTG | 7 cut(s) | 780, 1889, 2025, 3338, 3876, 4793, 5127 |
| Msp20I | TGGCCA | 1 cut(s) | 828 |
| MspA1I | CMGCKG | 4 cut(s) | 240, 824, 2930, 5175 |
| MspCI | CTTAAG | 3 cut(s) | 496, 523, 5537 |
| MspI | CCGG | 1 cut(s) | 129 |
| MspR9I | CCNGG | 8 cut(s) | 129, 1245, 2059, 2223, 2538, 3160, 4612, 4937 |
| MunI | CAATTG | 2 cut(s) | 4085, 5386 |
| Mva1269I | GAATGC | 2 cut(s) | 1473, 4855 |
| MvaI | CCWGG | 7 cut(s) | 1245, 2059, 2223, 2538, 3160, 4612, 4937 |
| MvnI | CGCG | 5 cut(s) | 34, 195, 240, 263, 5409 |
| NciI | CCSGG | 1 cut(s) | 129 |
| NcoI | CCATGG | 1 cut(s) | 5460 |
| NdeI | CATATG | 2 cut(s) | 3513, 4675 |
| NmeAIII | GCCGAG | 1 cut(s) | 442 |
| NmuCI | GTSAC | 7 cut(s) | 211, 488, 2232, 2519, 2804, 3360, 5293 |
| NruI | TCGCGA | 1 cut(s) | 195 |
| NsbI | TGCGCA | 1 cut(s) | 3772 |
| NsiI | ATGCAT | 4 cut(s) | 721, 1512, 1886, 5490 |
| NspV | TTCGAA | 1 cut(s) | 4123 |
| OliI | CACNNNNGTG | 1 cut(s) | 2025 |
| PaeR7I | CTCGAG | 1 cut(s) | 5525 |
| PaqCI | CACCTGC | 2 cut(s) | 3902, 4172 |
| PciI | ACATGT | 3 cut(s) | 831, 3028, 3808 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 297, 1041 |
| PctI | GAATGC | 2 cut(s) | 1473, 4855 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2385 |
| PflFI | GACNNNGTC | 1 cut(s) | 547 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 5078 |
| PleI | GAGTC | 7 cut(s) | 107, 113, 212, 370, 427, 2239, 5312 |
| PpsI | GAGTC | 7 cut(s) | 107, 113, 212, 370, 427, 2239, 5312 |
| PpuMI | RGGWCCY | 5 cut(s) | 1577, 3579, 3711, 3922, 3995 |
| PscI | ACATGT | 3 cut(s) | 831, 3028, 3808 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1420, 4164 |
| Psp124BI | GAGCTC | 1 cut(s) | 255 |
| Psp5II | RGGWCCY | 5 cut(s) | 1577, 3579, 3711, 3922, 3995 |
| Psp6I | CCWGG | 7 cut(s) | 1243, 2057, 2221, 2536, 3158, 4610, 4935 |
| PspEI | GGTNACC | 1 cut(s) | 4930 |
| PspFI | CCCAGC | 4 cut(s) | 3407, 3455, 3917, 5038 |
| PspGI | CCWGG | 7 cut(s) | 1243, 2057, 2221, 2536, 3158, 4610, 4935 |
| PspPPI | RGGWCCY | 5 cut(s) | 1577, 3579, 3711, 3922, 3995 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3917, 4374 |
| PsuI | RGATCY | 9 cut(s) | 1247, 1288, 1367, 1981, 2852, 3148, 3817, 4436, 4585 |
| PsyI | GACNNNGTC | 1 cut(s) | 547 |
| PvuII | CAGCTG | 3 cut(s) | 824, 2930, 5175 |
| RruI | TCGCGA | 1 cut(s) | 195 |
| RseI | CAYNNNNRTG | 7 cut(s) | 780, 1889, 2025, 3338, 3876, 4793, 5127 |
| SacI | GAGCTC | 1 cut(s) | 255 |
| SacII | CCGCGG | 1 cut(s) | 241 |
| SalI | GTCGAC | 2 cut(s) | 179, 290 |
| ScaI | AGTACT | 1 cut(s) | 1528 |
| SchI | GAGTC | 7 cut(s) | 107, 113, 212, 370, 428, 2240, 5312 |
| ScrFI | CCNGG | 8 cut(s) | 129, 1245, 2059, 2223, 2538, 3160, 4612, 4937 |
| SduI | GDGCHC | 7 cut(s) | 255, 855, 2415, 2887, 3463, 4800, 5097 |
| SexAI | ACCWGGT | 1 cut(s) | 2536 |
| SfcI | CTRYAG | 3 cut(s) | 4639, 4758, 4860 |
| Sfr274I | CTCGAG | 1 cut(s) | 5525 |
| Sfr303I | CCGCGG | 1 cut(s) | 241 |
| SfuI | TTCGAA | 1 cut(s) | 4123 |
| SgrBI | CCGCGG | 1 cut(s) | 241 |
| SinI | GGWCC | 8 cut(s) | 1577, 1942, 2959, 3579, 3711, 3922, 3995, 5263 |
| SlaI | CTCGAG | 1 cut(s) | 5525 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 780, 1889, 2025, 3338, 3876, 4793, 5127 |
| SspI | AATATT | 3 cut(s) | 2359, 2677, 3311 |
| SstI | GAGCTC | 1 cut(s) | 255 |
| StyD4I | CCNGG | 8 cut(s) | 127, 1243, 2057, 2221, 2536, 3158, 4610, 4935 |
| StyI | CCWWGG | 5 cut(s) | 3129, 4334, 4347, 5054, 5460 |
| TaiI | ACGT | 6 cut(s) | 1044, 1131, 2040, 2067, 2597, 3189 |
| TatI | WGTACW | 7 cut(s) | 365, 834, 1392, 1526, 2365, 3447, 4764 |
| TauI | GCSGC | 3 cut(s) | 1898, 2725, 5251 |
| TseFI | GTSAC | 7 cut(s) | 211, 488, 2232, 2519, 2804, 3360, 5293 |
| Tsp45I | GTSAC | 7 cut(s) | 211, 488, 2232, 2519, 2804, 3360, 5293 |
| TspGWI | ACGGA | 6 cut(s) | 372, 386, 1766, 3795, 4717, 4978 |
| Tth111I | GACNNNGTC | 1 cut(s) | 547 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 5078 |
| Vha464I | CTTAAG | 3 cut(s) | 496, 523, 5537 |
| VpaK11BI | GGWCC | 8 cut(s) | 1577, 1942, 2959, 3579, 3711, 3922, 3995, 5263 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 4445 |
| XapI | RAATTY | 7 cut(s) | 284, 685, 739, 804, 1315, 2939, 3370 |
| XbaI | TCTAGA | 1 cut(s) | 1534 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 836, 896, 4350 |
| XhoI | CTCGAG | 1 cut(s) | 5525 |
| XmaJI | CCTAGG | 1 cut(s) | 4334 |
| XmiI | GTMKAC | 3 cut(s) | 111, 180, 291 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2385 |
| ZraI | GACGTC | 2 cut(s) | 2065, 2595 |
| ZrmI | AGTACT | 1 cut(s) | 1528 |
| Zsp2I | ATGCAT | 4 cut(s) | 721, 1512, 1886, 5490 |