FvH4_7g11350

zf-MYND-like zinc finger, mRNA-binding

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
10560631 .. 10565317
4687 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11350.t1

Sequence Viewer

Length: 1170 bp
ATGGCCGACGTCGCTACCCTCTCCTGTGCTCGCTGCAGCAAACCCGCCAATCTTCAGTGCCCCAAGTGTGTGGAGTTGAAGCTTCCTCGTGAAGCTGCTGCTTTCTGCACACAGGATTGTTTTAAGGCATCGTGGAGCTCGCATAAATCAGTACATGTAAAGGCGAAGCAGTCTGATGGGACGGGGAATACGGAGAATGAAGGCTGGCTATATTGTATGAAGAAAGGACAGAGTCGATCTCCGAAACTTCCTTATTTTGAATGGACTGGGACATTGAGGCCATATCCTATATCTAGTAAGCGTGTGGTACCTTCTCATATTGATCTACCTGATTGGGCAGCTGATGGAATCCCAAAAGAGGAGCCTAGTAGTGACCTCCAGCGAATTGTTGAGATCAAGACTCCAGATCAAATTGAGAGGATGCGAGAAACTTGTCGAATTGCAAGAGAGGTTTTGGATGCAGCTGCTCGTGTCATACGGCCTGGTATCACGACTGATGAAATTGATAGGGTGGTCCATGATGCTACTATAGCTGCAGGCGGATATCCATCTCCCCTCAATTATCATTTTTTCCCAAAGTCTTGCTGCACGTCAGTCAATGAAGTAATTTGCCATGGGATTCCTGATGCCAGGAAATTAGAAGATGGTGATATCGTCAATGTTGACGTAACTGTGTATTACAAAGGCGTCCATGGTGATCTCAATGATACGTACTTTGTGGGAAATGTTGATGAAGAGTCTCGACGGCTAGTACAGTGTACTTACGAGTGCTTGGAAAAAGCAATAGCCATTGTAAAACCTGGAGTTAGATTTCGTGAAGTTGGAGAAGTCATTAATCGCCATGCTACTATGGCAGGATTCTCTGTGGTGAAATCATATTGTGGTCATGGTATAGGGGAGCTCTTTCATTGTGCACCAAATATTCCTCACTATGCAAGAAATAAAGCAGTTGGAGTGATGAAAGCTGGGCAAACTTTCACGATTGAACCGATGATCAATGCAGGGGTTTGGCGTGATCGAATGTGGCCTGATGGATGGACTGCTGTTACCGCAGATGGGAAACGAAGTGCTCAATTCGAGCACACACTTCTGGTGACAGAGACTGGAGTTGAAGTTCTTACAGCACGGTTGCCTTCATCACCAAAAGTGTACCCTTGGTTAGAAGTATGA

Protein Analysis

390

Amino Acids

43.24

Weight (kDa)

6.85

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C6H2 PF15801 10 - 53 2.8e-14 zf-MYND-like zinc finger, mRNA-binding
Peptidase_M24 PF00557 139 - 367 1.9e-56 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
Acc65I GGTACC 1 cut(s) 307
AccB1I GGYRCC 1 cut(s) 307
AciI CCGC 3 cut(s) 45, 540, 1050
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 38
AcyI GRCGYC 2 cut(s) 9, 687
AfaI GTAC 6 cut(s) 153, 309, 713, 753, 760, 1151
AfiI CCNNNNNNNGG 2 cut(s) 358, 1056
AflIII ACRYGT 1 cut(s) 154
AgsI TTSAA 4 cut(s) 79, 260, 986, 1112
AjiI CACGTC 1 cut(s) 591
AjnI CCWGG 3 cut(s) 481, 629, 799
AloI GAACNNNNNNTCC 2 cut(s) 1098, 1130
AluBI AGCT 8 cut(s) 82, 95, 138, 341, 464, 533, 901, 965
AluI AGCT 8 cut(s) 82, 95, 138, 341, 464, 533, 901, 965
Alw21I GWGCWC 6 cut(s) 31, 140, 903, 916, 1072, 1083
Alw26I GTCTC 2 cut(s) 744, 1094
Alw44I GTGCAC 1 cut(s) 912
AlwNI CAGNNNCTG 1 cut(s) 1103
AoxI GGCC 4 cut(s) 3, 278, 479, 1025
ApaLI GTGCAC 1 cut(s) 912
ApeKI GCWGC 9 cut(s) 33, 36, 95, 98, 338, 461, 464, 533, 585
AseI ATTAAT 1 cut(s) 834
Asp718I GGTACC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 514
AsuHPI GGTGA 5 cut(s) 659, 707, 880, 1105, 1131
AvaII GGWCC 1 cut(s) 514
BaeGI GKGCMC 2 cut(s) 62, 916
BanI GGYRCC 1 cut(s) 307
BanII GRGCYC 2 cut(s) 140, 903
BauI CACGAG 2 cut(s) 87, 468
Bbv12I GWGCWC 6 cut(s) 31, 140, 903, 916, 1072, 1083
BbvI GCAGC 9 cut(s) 20, 48, 82, 85, 350, 451, 473, 520, 572
BccI CCATC 7 cut(s) 170, 338, 556, 638, 1025, 1029, 1049
BceAI ACGGC 2 cut(s) 494, 761
BciT130I CCWGG 3 cut(s) 483, 631, 801
BclI TGATCA 1 cut(s) 993
BcoDI GTCTC 2 cut(s) 744, 1094
BfaI CTAG 3 cut(s) 294, 366, 749
BfmI CTRYAG 3 cut(s) 34, 528, 534
BisI GCNGC 9 cut(s) 34, 37, 96, 99, 339, 462, 465, 534, 586
BlsI GCNGC 9 cut(s) 35, 38, 97, 100, 340, 463, 466, 535, 587
Bme1390I CCNGG 3 cut(s) 483, 631, 801
Bme18I GGWCC 1 cut(s) 514
BmgBI CACGTC 1 cut(s) 591
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 2 cut(s) 309, 363
BmrFI CCNGG 3 cut(s) 483, 631, 801
BmrI ACTGGG 1 cut(s) 276
BmsI GCATC 5 cut(s) 137, 411, 448, 511, 616
BmuI ACTGGG 1 cut(s) 276
BplI GAGNNNNNCTC 2 cut(s) 223, 255
BpmI CTGGAG 4 cut(s) 362, 387, 822, 1125
BsaAI YACGTR 1 cut(s) 711
BsaBI GATNNNNATC 1 cut(s) 547
BsaHI GRCGYC 2 cut(s) 9, 687
BsaJI CCNNGG 3 cut(s) 613, 691, 1154
BsaXI ACNNNNNCTCC 2 cut(s) 1098, 1128
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 1056
Bse1I ACTGG 2 cut(s) 271, 1108
Bse8I GATNNNNATC 1 cut(s) 547
BseBI CCWGG 3 cut(s) 483, 631, 801
BseDI CCNNGG 3 cut(s) 613, 691, 1154
BseGI GGATG 3 cut(s) 426, 463, 1040
BseJI GATNNNNATC 1 cut(s) 547
BseLI CCNNNNNNNGG 2 cut(s) 358, 1056
BseNI ACTGG 2 cut(s) 271, 1108
BseRI GAGGAG 1 cut(s) 374
BseSI GKGCMC 2 cut(s) 62, 916
BseXI GCAGC 9 cut(s) 20, 48, 82, 85, 350, 451, 473, 520, 572
BseYI CCCAGC 1 cut(s) 965
BsgI GTGCAG 2 cut(s) 91, 571
BshFI GGCC 4 cut(s) 5, 280, 481, 1027
BshNI GGYRCC 1 cut(s) 307
BsiHKAI GWGCWC 6 cut(s) 31, 140, 903, 916, 1072, 1083
BslFI GGGAC 2 cut(s) 193, 283
BslI CCNNNNNNNGG 2 cut(s) 358, 1056
BsmAI GTCTC 2 cut(s) 744, 1094
BsmFI GGGAC 2 cut(s) 193, 283
BsnI GGCC 4 cut(s) 5, 280, 481, 1027
Bsp1286I GDGCHC 7 cut(s) 31, 62, 140, 903, 916, 1072, 1083
Bsp143I GATC 7 cut(s) 236, 322, 393, 406, 697, 993, 1015
Bsp19I CCATGG 2 cut(s) 613, 691
BspACI CCGC 3 cut(s) 45, 540, 1050
BspANI GGCC 4 cut(s) 5, 280, 481, 1027
BspLI GGNNCC 2 cut(s) 309, 363
BspMAI CTGCAG 2 cut(s) 38, 538
BspT107I GGYRCC 1 cut(s) 307
BsrI ACTGG 2 cut(s) 271, 1108
BssECI CCNNGG 3 cut(s) 613, 691, 1154
BssMI GATC 7 cut(s) 236, 322, 393, 406, 697, 993, 1015
BssNI GRCGYC 2 cut(s) 9, 687
BssSI CACGAG 2 cut(s) 87, 468
BssT1I CCWWGG 3 cut(s) 613, 691, 1154
Bst2BI CACGAG 2 cut(s) 87, 468
Bst2UI CCWGG 3 cut(s) 483, 631, 801
Bst4CI ACNGT 3 cut(s) 673, 756, 1128
Bst6I CTCTTC 1 cut(s) 729
BstACI GRCGYC 2 cut(s) 9, 687
BstBAI YACGTR 1 cut(s) 711
BstC8I GCNNGC 4 cut(s) 31, 140, 206, 538
BstDSI CCRYGG 2 cut(s) 613, 691
BstF5I GGATG 3 cut(s) 426, 463, 1040
BstKTI GATC 7 cut(s) 239, 325, 396, 409, 700, 996, 1018
BstMAI GTCTC 2 cut(s) 744, 1094
BstMBI GATC 7 cut(s) 236, 322, 393, 406, 697, 993, 1015
BstMWI GCNNNNNNNGC 4 cut(s) 11, 530, 851, 1049
BstNI CCWGG 3 cut(s) 483, 631, 801
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 3 cut(s) 481, 629, 799
BstSFI CTRYAG 3 cut(s) 34, 528, 534
BstSLI GKGCMC 2 cut(s) 62, 916
BstSNI TACGTA 1 cut(s) 711
BstV1I GCAGC 9 cut(s) 20, 48, 82, 85, 350, 451, 473, 520, 572
BstXI CCANNNNNNTGG 1 cut(s) 70
BsuRI GGCC 4 cut(s) 5, 280, 481, 1027
BtgI CCRYGG 2 cut(s) 613, 691
BtrI CACGTC 1 cut(s) 591
BtsCI GGATG 3 cut(s) 426, 463, 1040
BtsIMutI CAGTG 2 cut(s) 62, 761
Cac8I GCNNGC 4 cut(s) 31, 140, 206, 538
CaiI CAGNNNCTG 1 cut(s) 1103
Cfr13I GGNCC 1 cut(s) 514
CseI GACGC 1 cut(s) 676
Csp6I GTAC 6 cut(s) 152, 308, 712, 752, 759, 1150
CviAII CATG 6 cut(s) 155, 518, 614, 692, 842, 887
CviQI GTAC 6 cut(s) 152, 308, 712, 752, 759, 1150
DpnI GATC 7 cut(s) 238, 324, 395, 408, 699, 995, 1017
DpnII GATC 7 cut(s) 236, 322, 393, 406, 697, 993, 1015
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 729
EarI CTCTTC 1 cut(s) 729
EciI GGCGGA 1 cut(s) 555
Ecl136II GAGCTC 2 cut(s) 138, 901
Eco105I TACGTA 1 cut(s) 711
Eco130I CCWWGG 3 cut(s) 613, 691, 1154
Eco24I GRGCYC 2 cut(s) 140, 903
Eco32I GATATC 2 cut(s) 545, 652
Eco47I GGWCC 1 cut(s) 514
Eco53kI GAGCTC 2 cut(s) 138, 901
Eco57I CTGAAG 1 cut(s) 38
EcoICRI GAGCTC 2 cut(s) 138, 901
EcoRII CCWGG 3 cut(s) 481, 629, 799
EcoRV GATATC 2 cut(s) 545, 652
EcoT14I CCWWGG 3 cut(s) 613, 691, 1154
EcoT38I GRGCYC 2 cut(s) 140, 903
ErhI CCWWGG 3 cut(s) 613, 691, 1154
FaeI CATG 6 cut(s) 158, 521, 617, 695, 845, 890
FaqI GGGAC 2 cut(s) 193, 283
FatI CATG 6 cut(s) 154, 517, 613, 691, 841, 886
FauI CCCGC 1 cut(s) 52
FbaI TGATCA 1 cut(s) 993
Fnu4HI GCNGC 9 cut(s) 34, 37, 96, 99, 339, 462, 465, 534, 586
FokI GGATG 3 cut(s) 433, 470, 1047
FriOI GRGCYC 2 cut(s) 140, 903
Fsp4HI GCNGC 9 cut(s) 34, 37, 96, 99, 339, 462, 465, 534, 586
FspBI CTAG 3 cut(s) 294, 366, 749
GluI GCNGC 9 cut(s) 34, 37, 96, 99, 339, 462, 465, 534, 586
GsaI CCCAGC 1 cut(s) 969
GsuI CTGGAG 4 cut(s) 362, 387, 822, 1125
HaeIII GGCC 4 cut(s) 5, 280, 481, 1027
HgaI GACGC 1 cut(s) 676
Hin1I GRCGYC 2 cut(s) 9, 687
Hin1II CATG 6 cut(s) 158, 521, 617, 695, 845, 890
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 6 cut(s) 232, 348, 400, 619, 737, 858
HphI GGTGA 5 cut(s) 659, 707, 880, 1105, 1131
Hpy166II GTNNAC 4 cut(s) 664, 759, 914, 1150
Hpy188I TCNGA 2 cut(s) 175, 243
Hpy188III TCNNGA 8 cut(s) 89, 397, 404, 490, 623, 741, 815, 979
Hpy8I GTNNAC 4 cut(s) 664, 759, 914, 1150
Hpy99I CGWCG 3 cut(s) 11, 14, 747
HpyAV CCTTC 3 cut(s) 194, 321, 1143
HpyCH4III ACNGT 3 cut(s) 673, 756, 1128
HpyCH4IV ACGT 4 cut(s) 9, 590, 666, 710
HpyCH4V TGCA 9 cut(s) 36, 108, 443, 461, 536, 588, 914, 935, 1001
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 530, 851, 1049
HpySE526I ACGT 4 cut(s) 9, 590, 666, 710
Hsp92I GRCGYC 2 cut(s) 9, 687
Hsp92II CATG 6 cut(s) 158, 521, 617, 695, 845, 890
KpnI GGTACC 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 993
Kzo9I GATC 7 cut(s) 236, 322, 393, 406, 697, 993, 1015
LmnI GCTCC 3 cut(s) 135, 361, 898
Lsp1109I GCAGC 9 cut(s) 20, 48, 82, 85, 350, 451, 473, 520, 572
LweI GCATC 5 cut(s) 137, 411, 448, 511, 616
MaeI CTAG 3 cut(s) 294, 366, 749
MaeII ACGT 4 cut(s) 9, 590, 666, 710
MaeIII GTNAC 4 cut(s) 371, 667, 1045, 1093
MalI GATC 7 cut(s) 238, 324, 395, 408, 699, 995, 1017
MboI GATC 7 cut(s) 236, 322, 393, 406, 697, 993, 1015
MboII GAAGA 4 cut(s) 44, 232, 653, 746
MhlI GDGCHC 7 cut(s) 31, 62, 140, 903, 916, 1072, 1083
MluCI AATT 8 cut(s) 384, 411, 438, 501, 559, 606, 635, 1073
MlyI GAGTC 3 cut(s) 241, 394, 746
MmeI TCCRAC 2 cut(s) 802, 931
MnlI CCTC 9 cut(s) 29, 96, 270, 352, 386, 411, 442, 566, 936
MseI TTAA 2 cut(s) 123, 834
MspA1I CMGCKG 2 cut(s) 341, 464
MspR9I CCNGG 3 cut(s) 483, 631, 801
MvaI CCWGG 3 cut(s) 483, 631, 801
MwoI GCNNNNNNNGC 4 cut(s) 11, 530, 851, 1049
NcoI CCATGG 2 cut(s) 613, 691
NdeII GATC 7 cut(s) 236, 322, 393, 406, 697, 993, 1015
NlaIII CATG 6 cut(s) 158, 521, 617, 695, 845, 890
NlaIV GGNNCC 2 cut(s) 309, 363
NmuCI GTSAC 2 cut(s) 371, 1093
NspI RCATGY 1 cut(s) 158
PciI ACATGT 1 cut(s) 154
PcsI WCGNNNNNNNCGW 1 cut(s) 986
PfeI GAWTC 3 cut(s) 348, 619, 858
PflFI GACNNNGTC 1 cut(s) 231
PkrI GCNGC 9 cut(s) 35, 38, 97, 100, 340, 463, 466, 535, 587
PleI GAGTC 3 cut(s) 240, 394, 745
PpsI GAGTC 3 cut(s) 240, 394, 745
Ppu21I YACGTR 1 cut(s) 711
PscI ACATGT 1 cut(s) 154
PshBI ATTAAT 1 cut(s) 834
Psp124BI GAGCTC 2 cut(s) 140, 903
Psp6I CCWGG 3 cut(s) 481, 629, 799
PspFI CCCAGC 1 cut(s) 965
PspGI CCWGG 3 cut(s) 481, 629, 799
PspN4I GGNNCC 2 cut(s) 309, 363
PspPI GGNCC 1 cut(s) 514
PstI CTGCAG 2 cut(s) 38, 538
PstNI CAGNNNCTG 1 cut(s) 1103
PsyI GACNNNGTC 1 cut(s) 231
PvuII CAGCTG 2 cut(s) 341, 464
RsaI GTAC 6 cut(s) 153, 309, 713, 753, 760, 1151
RsaNI GTAC 6 cut(s) 152, 308, 712, 752, 759, 1150
SacI GAGCTC 2 cut(s) 140, 903
SaqAI TTAA 2 cut(s) 123, 834
SatI GCNGC 9 cut(s) 34, 37, 96, 99, 339, 462, 465, 534, 586
Sau3AI GATC 7 cut(s) 236, 322, 393, 406, 697, 993, 1015
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 3 cut(s) 241, 394, 746
ScrFI CCNGG 3 cut(s) 483, 631, 801
SduI GDGCHC 7 cut(s) 31, 62, 140, 903, 916, 1072, 1083
SfaNI GCATC 5 cut(s) 137, 411, 448, 511, 616
SfcI CTRYAG 3 cut(s) 34, 528, 534
SinI GGWCC 1 cut(s) 514
SnaBI TACGTA 1 cut(s) 711
Sse9I AATT 8 cut(s) 384, 411, 438, 501, 559, 606, 635, 1073
SsiI CCGC 3 cut(s) 45, 540, 1050
SspI AATATT 1 cut(s) 922
SspMI CTAG 3 cut(s) 294, 366, 749
SstI GAGCTC 2 cut(s) 140, 903
StyD4I CCNGG 3 cut(s) 481, 629, 799
StyI CCWWGG 3 cut(s) 613, 691, 1154
TaaI ACNGT 3 cut(s) 673, 756, 1128
TaiI ACGT 4 cut(s) 12, 593, 669, 713
TaqI TCGA 5 cut(s) 235, 436, 742, 1018, 1077
TasI AATT 8 cut(s) 384, 411, 438, 501, 559, 606, 635, 1073
TatI WGTACW 3 cut(s) 151, 751, 758
TfiI GAWTC 3 cut(s) 348, 619, 858
Tru1I TTAA 2 cut(s) 123, 834
Tru9I TTAA 2 cut(s) 123, 834
TscAI CASTG 2 cut(s) 62, 761
TseFI GTSAC 2 cut(s) 371, 1093
TseI GCWGC 9 cut(s) 33, 36, 95, 98, 338, 461, 464, 533, 585
Tsp45I GTSAC 2 cut(s) 371, 1093
TspDTI ATGAA 8 cut(s) 213, 233, 513, 615, 747, 896, 974, 1125
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 2 cut(s) 62, 761
Tth111I GACNNNGTC 1 cut(s) 231
VneI GTGCAC 1 cut(s) 912
VpaK11BI GGWCC 1 cut(s) 514
VspI ATTAAT 1 cut(s) 834
XceI RCATGY 1 cut(s) 158
XspI CTAG 3 cut(s) 294, 366, 749
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.