Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003129

Physical Location & Seq

Genomic Coordinates Reverse (-)

24106281 .. 24118241

Gene Structure 11961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028542

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGACTGCTCGATTGGACCGACTGCGTTTCGTTCACCGGATTCGGATCGGGTCATGGTTGCGTCATCTTCTTCAGCCACCGGTGGTTCCTCTTCTTCTCCGATATGTGGTGGATATCCATCTCCCCTCAATTATCATTTTTTCCCAAAATCTTGCTGCACGTAGGTCAGTCAATGAAGTAATTTGCCATGGGATTCCGGATGCCAGGAAATTAGAGGATGGTGATATCGTCAATGTTGATGTTTCTGTGTATTACAAGGGTGTCCATGGTGATCTCAATGATACATACTTTGTGGGAAATGTTGATGAAGAGTCTCGACGGCTAGTCCAGTGTACTTATGAGTGCTTGGAAAAAGCAATATCCATTGTAAAACCTGGAGTTAGATTTCGTGAAGTTGGAGAAGTCATTAATCGCCATGCTACGATGGCGGGATTTTCTGTGGTGAAATCATATTGTGGTCATGGTATAGGGGAGCTCTTTCATTGTGCACCAAATATTCCTCACTATGCAAGAAATAAAGCAGTTGGAGTGATGAAAGCTGGACAAACTTTTACGATTGAACCAATGATCAATGCAGGAATTTGGCGTGATCGAATGTGGCCTGATGGGTGGACTGATGTTACCGCGGATGGAAAACGAAGTGCTCAATTTGAGCACACACTTCTGGTGACTGAGACCGGAGTTGAAGTTCTTACAGCACGGTTGCCTTCGTCGCCAAAAGTGTACCCCTGGTTAGATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24 zf-C6H2

Protein Analysis

248

Amino Acids

27.86

Weight (kDa)

8.27

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	56 - 225	2.9e-41	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45240 AT2G45240
fragaria_vesca	FvH4_7g11350 FvH4_7g11370
malus_domestica	MD02G1206000.v1.1 MD07G1118400.v1.1 MD07G1118600.v1.1
prunus_persica	Prupe.2G141300_v2.0.a1
pyrus_communis	pycom02g16990 pycom07g10610
rosa_chinensis	RchiOBHm_Chr1g0349561 RchiOBHm_Chr1g0349651 RchiOBHm_Chr4g0403521 RchiOBHm_Chr7g0223151
rosa_laevigata	RLG00000028538 RLG00000028542
rosa_multiflora	Rmu_sc0001593.1_g000008 Rmu_sc0002495.1_g000024 Rmu_sc0002495.1_g000038 Rmu_sc0006074.1_g000011 Rmu_sc0012293.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305410 Rroxscaffold_4G00305430
rosa_rugosa	Rorug01G0204500 Rorug05G0164500
rosa_samantha	Rh1AG221900 Rh1AG222400 Rh1BG188000 Rh1BG188300 Rh1CG206700 Rh1CG206800 Rh1CG207100 Rh1DG217400 Rh1DG217600
rosa_wichuraiana	Rw1G018860 Rw1G018910 Rw1G018950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	626
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	3 cut(s)	428, 624, 626
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	579
AcuI	CTGAAG	1 cut(s)	56
AfaI	GTAC	2 cut(s)	334, 725
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgeI	ACCGGT	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	560, 686
AhdI	GACNNNNNGTC	1 cut(s)	323
AjnI	CCWGG	3 cut(s)	203, 373, 728
AloI	GAACNNNNNNTCC	2 cut(s)	672, 704
AluBI	AGCT	2 cut(s)	475, 539
AluI	AGCT	2 cut(s)	475, 539
Alw21I	GWGCWC	4 cut(s)	477, 490, 646, 657
Alw26I	GTCTC	2 cut(s)	318, 668
Alw44I	GTGCAC	1 cut(s)	486
AlwI	GGATC	1 cut(s)	53
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	1 cut(s)	599
ApaLI	GTGCAC	1 cut(s)	486
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	579
AseI	ATTAAT	1 cut(s)	408
AsiGI	ACCGGT	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	5 cut(s)	26, 233, 281, 454, 679
AvaII	GGWCC	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	477
Bbv12I	GWGCWC	4 cut(s)	477, 490, 646, 657
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	5 cut(s)	126, 212, 418, 599, 623
BceAI	ACGGC	1 cut(s)	335
BciT130I	CCWGG	3 cut(s)	205, 375, 730
BclI	TGATCA	1 cut(s)	567
BcoDI	GTCTC	2 cut(s)	318, 668
BfaI	CTAG	1 cut(s)	323
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	3 cut(s)	205, 375, 730
Bme18I	GGWCC	1 cut(s)	16
BmeRI	GACNNNNNGTC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	3 cut(s)	205, 375, 730
BmsI	GCATC	2 cut(s)	190, 727
BpmI	CTGGAG	1 cut(s)	396
BsaAI	YACGTR	1 cut(s)	161
BsaBI	GATNNNNATC	2 cut(s)	44, 117
BsaI	GGTCTC	1 cut(s)	668
BsaJI	CCNNGG	4 cut(s)	187, 265, 624, 728
BsaWI	WCCGGW	4 cut(s)	36, 79, 196, 677
BsaXI	ACNNNNNCTCC	2 cut(s)	672, 702
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	328
Bse8I	GATNNNNATC	2 cut(s)	44, 117
BseAI	TCCGGA	1 cut(s)	196
BseBI	CCWGG	3 cut(s)	205, 375, 730
BseDI	CCNNGG	4 cut(s)	187, 265, 624, 728
BseGI	GGATG	3 cut(s)	205, 223, 634
BseJI	GATNNNNATC	2 cut(s)	44, 117
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	663
BseNI	ACTGG	1 cut(s)	328
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	1 cut(s)	142
BsgI	GTGCAG	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	626
BshFI	GGCC	1 cut(s)	601
BshTI	ACCGGT	1 cut(s)	79
BsiHKAI	GWGCWC	4 cut(s)	477, 490, 646, 657
BsiSI	CCGG	4 cut(s)	37, 80, 197, 678
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	2 cut(s)	318, 668
BsnI	GGCC	1 cut(s)	601
Bso31I	GGTCTC	1 cut(s)	668
Bsp1286I	GDGCHC	4 cut(s)	477, 490, 646, 657
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	4 cut(s)	45, 271, 567, 589
Bsp19I	CCATGG	2 cut(s)	187, 265
BspACI	CCGC	3 cut(s)	428, 624, 626
BspANI	GGCC	1 cut(s)	601
BspCNI	CTCAG	1 cut(s)	664
BspEI	TCCGGA	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	626
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	668
BsrFI	RCCGGY	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	4 cut(s)	187, 265, 624, 728
BssMI	GATC	4 cut(s)	45, 271, 567, 589
BssT1I	CCWWGG	2 cut(s)	187, 265
Bst2UI	CCWGG	3 cut(s)	205, 375, 730
Bst4CI	ACNGT	1 cut(s)	702
Bst6I	CTCTTC	2 cut(s)	96, 303
BstBAI	YACGTR	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	672
BstDSI	CCRYGG	3 cut(s)	187, 265, 624
BstF5I	GGATG	3 cut(s)	205, 223, 634
BstFNI	CGCG	1 cut(s)	626
BstKTI	GATC	4 cut(s)	48, 274, 570, 592
BstMAI	GTCTC	2 cut(s)	318, 668
BstMBI	GATC	4 cut(s)	45, 271, 567, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 712
BstNI	CCWGG	3 cut(s)	205, 375, 730
BstSCI	CCNGG	3 cut(s)	203, 373, 728
BstSLI	GKGCMC	1 cut(s)	490
BstUI	CGCG	1 cut(s)	626
BstV1I	GCAGC	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	601
BtgI	CCRYGG	3 cut(s)	187, 265, 624
BtsCI	GGATG	3 cut(s)	205, 223, 634
BtsIMutI	CAGTG	1 cut(s)	335
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	16
Cfr42I	CCGCGG	1 cut(s)	627
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	333, 724
CspAI	ACCGGT	1 cut(s)	79
CviAII	CATG	5 cut(s)	54, 188, 266, 416, 461
CviJI	RGCY	5 cut(s)	76, 322, 475, 539, 601
CviKI_1	RGCY	5 cut(s)	76, 322, 475, 539, 601
CviQI	GTAC	2 cut(s)	333, 724
DdeI	CTNAG	1 cut(s)	672
DpnI	GATC	4 cut(s)	47, 273, 569, 591
DpnII	GATC	4 cut(s)	45, 271, 567, 589
DriI	GACNNNNNGTC	1 cut(s)	323
Eam1104I	CTCTTC	2 cut(s)	96, 303
Eam1105I	GACNNNNNGTC	1 cut(s)	323
EarI	CTCTTC	2 cut(s)	96, 303
Ecl136II	GAGCTC	1 cut(s)	475
Eco130I	CCWWGG	2 cut(s)	187, 265
Eco24I	GRGCYC	1 cut(s)	477
Eco31I	GGTCTC	1 cut(s)	668
Eco32I	GATATC	2 cut(s)	115, 226
Eco47I	GGWCC	1 cut(s)	16
Eco53kI	GAGCTC	1 cut(s)	475
Eco57I	CTGAAG	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	475
EcoRII	CCWGG	3 cut(s)	203, 373, 728
EcoRV	GATATC	2 cut(s)	115, 226
EcoT14I	CCWWGG	2 cut(s)	187, 265
EcoT38I	GRGCYC	1 cut(s)	477
ErhI	CCWWGG	2 cut(s)	187, 265
FaeI	CATG	5 cut(s)	57, 191, 269, 419, 464
FatI	CATG	5 cut(s)	53, 187, 265, 415, 460
FauI	CCCGC	1 cut(s)	421
FbaI	TGATCA	1 cut(s)	567
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	3 cut(s)	212, 230, 641
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	601
HapII	CCGG	4 cut(s)	37, 80, 197, 678
HgaI	GACGC	1 cut(s)	50
Hin1II	CATG	5 cut(s)	57, 191, 269, 419, 464
HinfI	GANTC	3 cut(s)	40, 193, 311
HpaII	CCGG	4 cut(s)	37, 80, 197, 678
HphI	GGTGA	5 cut(s)	26, 233, 281, 454, 679
Hpy166II	GTNNAC	5 cut(s)	34, 333, 488, 612, 724
Hpy188I	TCNGA	2 cut(s)	45, 101
Hpy188III	TCNNGA	3 cut(s)	197, 315, 389
Hpy8I	GTNNAC	5 cut(s)	34, 333, 488, 612, 724
Hpy99I	CGWCG	2 cut(s)	321, 715
HpyAV	CCTTC	1 cut(s)	717
HpyCH4III	ACNGT	1 cut(s)	702
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	4 cut(s)	158, 488, 509, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 712
HpyF3I	CTNAG	1 cut(s)	672
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	5 cut(s)	57, 191, 269, 419, 464
Kpn2I	TCCGGA	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	567
KspI	CCGCGG	1 cut(s)	627
Kzo9I	GATC	4 cut(s)	45, 271, 567, 589
LmnI	GCTCC	1 cut(s)	472
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	2 cut(s)	190, 727
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	2 cut(s)	619, 667
MalI	GATC	4 cut(s)	47, 273, 569, 591
MboI	GATC	4 cut(s)	45, 271, 567, 589
MboII	GAAGA	5 cut(s)	59, 62, 83, 86, 320
MhlI	GDGCHC	4 cut(s)	477, 490, 646, 657
MluCI	AATT	5 cut(s)	129, 180, 209, 579, 647
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	2 cut(s)	376, 505
MnlI	CCTC	4 cut(s)	99, 136, 208, 510
MroI	TCCGGA	1 cut(s)	196
MseI	TTAA	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	4 cut(s)	37, 80, 197, 678
MspR9I	CCNGG	3 cut(s)	205, 375, 730
MvaI	CCWGG	3 cut(s)	205, 375, 730
MvnI	CGCG	1 cut(s)	626
MwoI	GCNNNNNNNGC	2 cut(s)	425, 712
NcoI	CCATGG	2 cut(s)	187, 265
NdeII	GATC	4 cut(s)	45, 271, 567, 589
NlaIII	CATG	5 cut(s)	57, 191, 269, 419, 464
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	667
PcsI	WCGNNNNNNNCGW	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	40, 193
PinAI	ACCGGT	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Ppu21I	YACGTR	1 cut(s)	161
PshBI	ATTAAT	1 cut(s)	408
Psp124BI	GAGCTC	1 cut(s)	477
Psp6I	CCWGG	3 cut(s)	203, 373, 728
PspGI	CCWGG	3 cut(s)	203, 373, 728
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	16
RsaI	GTAC	2 cut(s)	334, 725
RsaNI	GTAC	2 cut(s)	333, 724
SacI	GAGCTC	1 cut(s)	477
SacII	CCGCGG	1 cut(s)	627
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	4 cut(s)	45, 271, 567, 589
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	3 cut(s)	205, 375, 730
SduI	GDGCHC	4 cut(s)	477, 490, 646, 657
SetI	ASST	5 cut(s)	163, 167, 376, 477, 541
SfaNI	GCATC	2 cut(s)	190, 727
Sfr303I	CCGCGG	1 cut(s)	627
SgrAI	CRCCGGYG	1 cut(s)	79
SgrBI	CCGCGG	1 cut(s)	627
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	5 cut(s)	129, 180, 209, 579, 647
SsiI	CCGC	3 cut(s)	428, 624, 626
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	1 cut(s)	323
SstI	GAGCTC	1 cut(s)	477
StyD4I	CCNGG	3 cut(s)	203, 373, 728
StyI	CCWWGG	2 cut(s)	187, 265
TaaI	ACNGT	1 cut(s)	702
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	3 cut(s)	10, 316, 592
TaqII	GACCGA	1 cut(s)	33
TasI	AATT	5 cut(s)	129, 180, 209, 579, 647
TatI	WGTACW	1 cut(s)	332
TfiI	GAWTC	2 cut(s)	40, 193
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	1 cut(s)	335
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	4 cut(s)	189, 321, 470, 548
TspRI	CASTG	1 cut(s)	335
VneI	GTGCAC	1 cut(s)	486
VpaK11BI	GGWCC	1 cut(s)	16
VspI	ATTAAT	1 cut(s)	408
XapI	RAATTY	1 cut(s)	579
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.