Rw1G018910

zf-MYND-like zinc finger, mRNA-binding

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
41470058 .. 41474906
4849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G018910.1

Sequence Viewer

Length: 1161 bp
ATGGCCGACGTCGCCACCCTATCGTGTGCTCGTTGCAGCAAACCCGCCAATCTTCAGTGTCCCAAGTGTGTGGAATTGAAGCTTCCTCGTGAAGATGCCGCTTTCTGCACTCAGGATTGTTTTAAGGCTTTGTGGAGCTCGCATAAATCGGTACATTTAAAGGCCAAGCAGTCCAATGGGGCGGGAAATCCAGAGAACGAAGGCTGGCAATATTGCTTGAAGAAAGGACAGGGTCGAACTCCGAAACTTCCTTATTTTGATTGGACAGGGACATTGAGACCATATCCTATATCTAGTAAACGTGTGGTACCTGCTCATATTGATTTACCTGATTGGGCAGCTGATGGAATCCCAAAAGAGGAGCCCAGTAGTGACCTGCAGCGTGTTGTTGAGATCAAAACTCCGGATCAAATTGAGAGGATGCGAGAAACTTGTCAAAGAGGTTTTGGATGCAGCTGCTCGTGTTATAAACCTGGTATCACGACTGATGAAATTGATCGGGTGGTCCATGATGCTACTATTGCTGCGGGTGGATATCCATCTCCCCTCAATTATCATTTTTTCCCAAAGTCTTGCTGCACGTCAGTCAATGAAGTAATTTGCCATGGGATTCCTGATGCCAGGAAACTAGAGGATGGTGATATCGTCAATGTTGATGTGTCTGTGTTTTACAAGGGTGTCCATGCTGATCTCAATGATACATACTTTGTGGGAAATGTTGATGAAGAGTCTCGACGGCTAGTCCAGTGTACTTATGAGTGCTTGGAAAAAGCAATATCCATTGTAAAACCTGGAGTTAGATTTCGTGAAGTTGGAGAAGTCATTAATCGCCATGCTACGATGGCGGGATTTTCTGTGGCGAAATCATATTGTGGTCATGGTATAGGGGAGCTCTTTCATTGTGCACCAAATATTCCTCACTATGCAAGAAATAAAGCAGTTGGAGTGATGAAAGCTGGACAAACTTTTACGATTGAACCAATGATCAATGCAGGAATTTGGCGTGATCGAATGTGGCCTGACGGGTGGACTGATGTTACCGCAGATGGAAAACGAAGTGCTCAATTTGAGCACACACTTCTGGTGACTGAGACCGGAGTTGAAGTTCTTACAGCACGGTTGCCTTCATCGCCAAAAGTGTACCCTTGGTTAGATGCCTGA

Protein Analysis

386

Amino Acids

42.84

Weight (kDa)

6.63

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C6H2 PF15801 10 - 53 9.9e-14 zf-MYND-like zinc finger, mRNA-binding
Peptidase_M24 PF00557 152 - 364 1.9e-49 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AatII GACGTC 1 cut(s) 12
Acc36I ACCTGC 2 cut(s) 319, 384
Acc65I GGTACC 1 cut(s) 307
AccB1I GGYRCC 1 cut(s) 307
AccIII TCCGGA 1 cut(s) 403
AciI CCGC 6 cut(s) 45, 99, 182, 527, 845, 1041
AclWI GGATC 1 cut(s) 414
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 996
AcuI CTGAAG 1 cut(s) 38
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 4 cut(s) 153, 309, 751, 1142
AfiI CCNNNNNNNGG 1 cut(s) 358
AflIII ACRYGT 1 cut(s) 301
AgsI TTSAA 4 cut(s) 79, 220, 977, 1103
AhdI GACNNNNNGTC 1 cut(s) 740
AjiI CACGTC 1 cut(s) 582
AjnI CCWGG 3 cut(s) 472, 620, 790
AloI GAACNNNNNNTCC 2 cut(s) 1089, 1121
AluBI AGCT 6 cut(s) 82, 138, 341, 456, 892, 956
AluI AGCT 6 cut(s) 82, 138, 341, 456, 892, 956
Alw21I GWGCWC 6 cut(s) 31, 140, 894, 907, 1063, 1074
Alw26I GTCTC 3 cut(s) 271, 735, 1085
Alw44I GTGCAC 1 cut(s) 903
AlwI GGATC 1 cut(s) 414
Aor13HI TCCGGA 1 cut(s) 403
AoxI GGCC 3 cut(s) 3, 162, 1016
ApaLI GTGCAC 1 cut(s) 903
ApeKI GCWGC 7 cut(s) 36, 338, 379, 453, 456, 524, 576
ApoI RAATTY 1 cut(s) 996
AseI ATTAAT 1 cut(s) 825
Asp718I GGTACC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 505
AsuHPI GGTGA 2 cut(s) 650, 1096
AvaII GGWCC 1 cut(s) 505
BaeGI GKGCMC 1 cut(s) 907
BanI GGYRCC 1 cut(s) 307
BanII GRGCYC 3 cut(s) 140, 366, 894
BauI CACGAG 2 cut(s) 87, 460
Bbv12I GWGCWC 6 cut(s) 31, 140, 894, 907, 1063, 1074
BbvI GCAGC 7 cut(s) 48, 350, 391, 443, 465, 511, 563
BccI CCATC 5 cut(s) 338, 547, 629, 835, 1040
BceAI ACGGC 1 cut(s) 752
BciT130I CCWGG 3 cut(s) 474, 622, 792
BclI TGATCA 1 cut(s) 984
BcoDI GTCTC 3 cut(s) 271, 735, 1085
BfaI CTAG 3 cut(s) 294, 629, 740
BfmI CTRYAG 1 cut(s) 377
BfuAI ACCTGC 2 cut(s) 319, 384
BisI GCNGC 8 cut(s) 37, 99, 339, 380, 454, 457, 525, 577
BlsI GCNGC 8 cut(s) 38, 100, 340, 381, 455, 458, 526, 578
Bme1390I CCNGG 3 cut(s) 474, 622, 792
Bme18I GGWCC 1 cut(s) 505
BmeRI GACNNNNNGTC 1 cut(s) 740
BmgBI CACGTC 1 cut(s) 582
BmgT120I GGNCC 1 cut(s) 505
BmiI GGNNCC 2 cut(s) 309, 363
BmrFI CCNGG 3 cut(s) 474, 622, 792
BmrI ACTGGG 1 cut(s) 360
BmsI GCATC 6 cut(s) 85, 411, 440, 502, 607, 1144
BmuI ACTGGG 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 813
BsaBI GATNNNNATC 1 cut(s) 538
BsaHI GRCGYC 1 cut(s) 9
BsaI GGTCTC 2 cut(s) 271, 1085
BsaJI CCNNGG 2 cut(s) 604, 1145
BsaWI WCCGGW 2 cut(s) 403, 1094
BsaXI ACNNNNNCTCC 2 cut(s) 1089, 1119
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse1I ACTGG 2 cut(s) 366, 745
Bse8I GATNNNNATC 1 cut(s) 538
BseAI TCCGGA 1 cut(s) 403
BseBI CCWGG 3 cut(s) 474, 622, 792
BseDI CCNNGG 2 cut(s) 604, 1145
BseGI GGATG 3 cut(s) 426, 455, 640
BseJI GATNNNNATC 1 cut(s) 538
BseLI CCNNNNNNNGG 1 cut(s) 358
BseMII CTCAG 2 cut(s) 125, 1080
BseNI ACTGG 2 cut(s) 366, 745
BseRI GAGGAG 1 cut(s) 374
BseSI GKGCMC 1 cut(s) 907
BseXI GCAGC 7 cut(s) 48, 350, 391, 443, 465, 511, 563
BsgI GTGCAG 2 cut(s) 91, 562
BshFI GGCC 3 cut(s) 5, 164, 1018
BshNI GGYRCC 1 cut(s) 307
BsiHKAI GWGCWC 6 cut(s) 31, 140, 894, 907, 1063, 1074
BsiSI CCGG 2 cut(s) 404, 1095
BslFI GGGAC 2 cut(s) 45, 283
BslI CCNNNNNNNGG 1 cut(s) 358
BsmAI GTCTC 3 cut(s) 271, 735, 1085
BsmFI GGGAC 2 cut(s) 45, 283
BsnI GGCC 3 cut(s) 5, 164, 1018
Bso31I GGTCTC 2 cut(s) 271, 1085
Bsp1286I GDGCHC 7 cut(s) 31, 140, 366, 894, 907, 1063, 1074
Bsp13I TCCGGA 1 cut(s) 403
Bsp143I GATC 6 cut(s) 393, 406, 496, 688, 984, 1006
Bsp19I CCATGG 1 cut(s) 604
BspACI CCGC 6 cut(s) 45, 99, 182, 527, 845, 1041
BspANI GGCC 3 cut(s) 5, 164, 1018
BspCNI CTCAG 2 cut(s) 124, 1081
BspEI TCCGGA 1 cut(s) 403
BspLI GGNNCC 2 cut(s) 309, 363
BspMAI CTGCAG 1 cut(s) 381
BspMI ACCTGC 2 cut(s) 319, 384
BspPI GGATC 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 307
BspTNI GGTCTC 2 cut(s) 271, 1085
BsrI ACTGG 2 cut(s) 366, 745
BssECI CCNNGG 2 cut(s) 604, 1145
BssMI GATC 6 cut(s) 393, 406, 496, 688, 984, 1006
BssNI GRCGYC 1 cut(s) 9
BssSI CACGAG 2 cut(s) 87, 460
BssT1I CCWWGG 2 cut(s) 604, 1145
Bst2BI CACGAG 2 cut(s) 87, 460
Bst2UI CCWGG 3 cut(s) 474, 622, 792
Bst4CI ACNGT 1 cut(s) 1119
Bst6I CTCTTC 1 cut(s) 720
BstACI GRCGYC 1 cut(s) 9
BstC8I GCNNGC 2 cut(s) 140, 206
BstDEI CTNAG 2 cut(s) 111, 1089
BstDSI CCRYGG 1 cut(s) 604
BstF5I GGATG 3 cut(s) 426, 455, 640
BstKTI GATC 6 cut(s) 396, 409, 499, 691, 987, 1009
BstMAI GTCTC 3 cut(s) 271, 735, 1085
BstMBI GATC 6 cut(s) 393, 406, 496, 688, 984, 1006
BstMWI GCNNNNNNNGC 4 cut(s) 11, 521, 842, 1129
BstNI CCWGG 3 cut(s) 474, 622, 792
BstSCI CCNGG 3 cut(s) 472, 620, 790
BstSFI CTRYAG 1 cut(s) 377
BstSLI GKGCMC 1 cut(s) 907
BstV1I GCAGC 7 cut(s) 48, 350, 391, 443, 465, 511, 563
BstXI CCANNNNNNTGG 1 cut(s) 70
BsuRI GGCC 3 cut(s) 5, 164, 1018
BtgI CCRYGG 1 cut(s) 604
BtgZI GCGATG 1 cut(s) 1113
BtrI CACGTC 1 cut(s) 582
BtsCI GGATG 3 cut(s) 426, 455, 640
BtsIMutI CAGTG 2 cut(s) 62, 752
BveI ACCTGC 2 cut(s) 319, 384
Cac8I GCNNGC 2 cut(s) 140, 206
Cfr13I GGNCC 1 cut(s) 505
CsiI ACCWGGT 1 cut(s) 472
Csp6I GTAC 4 cut(s) 152, 308, 750, 1141
CviAII CATG 5 cut(s) 509, 605, 683, 833, 878
CviQI GTAC 4 cut(s) 152, 308, 750, 1141
DdeI CTNAG 2 cut(s) 111, 1089
DpnI GATC 6 cut(s) 395, 408, 498, 690, 986, 1008
DpnII GATC 6 cut(s) 393, 406, 496, 688, 984, 1006
DraI TTTAAA 1 cut(s) 159
DriI GACNNNNNGTC 1 cut(s) 740
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 720
Eam1105I GACNNNNNGTC 1 cut(s) 740
EarI CTCTTC 1 cut(s) 720
Ecl136II GAGCTC 2 cut(s) 138, 892
Eco130I CCWWGG 2 cut(s) 604, 1145
Eco24I GRGCYC 3 cut(s) 140, 366, 894
Eco31I GGTCTC 2 cut(s) 271, 1085
Eco32I GATATC 2 cut(s) 536, 643
Eco47I GGWCC 1 cut(s) 505
Eco53kI GAGCTC 2 cut(s) 138, 892
Eco57I CTGAAG 1 cut(s) 38
EcoICRI GAGCTC 2 cut(s) 138, 892
EcoRII CCWGG 3 cut(s) 472, 620, 790
EcoRV GATATC 2 cut(s) 536, 643
EcoT14I CCWWGG 2 cut(s) 604, 1145
EcoT38I GRGCYC 3 cut(s) 140, 366, 894
ErhI CCWWGG 2 cut(s) 604, 1145
FaeI CATG 5 cut(s) 512, 608, 686, 836, 881
FaqI GGGAC 2 cut(s) 45, 283
FatI CATG 5 cut(s) 508, 604, 682, 832, 877
FauI CCCGC 4 cut(s) 52, 175, 520, 838
FbaI TGATCA 1 cut(s) 984
Fnu4HI GCNGC 8 cut(s) 37, 99, 339, 380, 454, 457, 525, 577
FokI GGATG 3 cut(s) 433, 462, 647
FriOI GRGCYC 3 cut(s) 140, 366, 894
Fsp4HI GCNGC 8 cut(s) 37, 99, 339, 380, 454, 457, 525, 577
FspBI CTAG 3 cut(s) 294, 629, 740
GluI GCNGC 8 cut(s) 37, 99, 339, 380, 454, 457, 525, 577
GsuI CTGGAG 1 cut(s) 813
HaeIII GGCC 3 cut(s) 5, 164, 1018
HapII CCGG 2 cut(s) 404, 1095
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 5 cut(s) 512, 608, 686, 836, 881
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 3 cut(s) 348, 610, 728
HpaII CCGG 2 cut(s) 404, 1095
HphI GGTGA 2 cut(s) 650, 1096
Hpy166II GTNNAC 5 cut(s) 299, 750, 905, 1029, 1141
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 8 cut(s) 89, 113, 191, 404, 481, 614, 732, 806
Hpy8I GTNNAC 5 cut(s) 299, 750, 905, 1029, 1141
Hpy99I CGWCG 3 cut(s) 11, 14, 738
HpyAV CCTTC 2 cut(s) 194, 1134
HpyCH4III ACNGT 1 cut(s) 1119
HpyCH4IV ACGT 3 cut(s) 9, 301, 581
HpyCH4V TGCA 8 cut(s) 36, 108, 379, 453, 579, 905, 926, 992
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 521, 842, 1129
HpyF3I CTNAG 2 cut(s) 111, 1089
HpySE526I ACGT 3 cut(s) 9, 301, 581
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 5 cut(s) 512, 608, 686, 836, 881
Kpn2I TCCGGA 1 cut(s) 403
KpnI GGTACC 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 984
Kzo9I GATC 6 cut(s) 393, 406, 496, 688, 984, 1006
LmnI GCTCC 3 cut(s) 135, 361, 889
Lsp1109I GCAGC 7 cut(s) 48, 350, 391, 443, 465, 511, 563
LweI GCATC 6 cut(s) 85, 411, 440, 502, 607, 1144
MabI ACCWGGT 1 cut(s) 472
MaeI CTAG 3 cut(s) 294, 629, 740
MaeII ACGT 3 cut(s) 9, 301, 581
MaeIII GTNAC 3 cut(s) 371, 1036, 1084
MalI GATC 6 cut(s) 395, 408, 498, 690, 986, 1008
MboI GATC 6 cut(s) 393, 406, 496, 688, 984, 1006
MboII GAAGA 4 cut(s) 44, 104, 232, 737
MhlI GDGCHC 7 cut(s) 31, 140, 366, 894, 907, 1063, 1074
MluCI AATT 7 cut(s) 74, 411, 492, 550, 597, 996, 1064
MlyI GAGTC 1 cut(s) 737
MmeI TCCRAC 2 cut(s) 793, 922
MnlI CCTC 7 cut(s) 96, 352, 411, 434, 557, 625, 927
MroI TCCGGA 1 cut(s) 403
MseI TTAA 3 cut(s) 123, 158, 825
MspA1I CMGCKG 2 cut(s) 341, 456
MspI CCGG 2 cut(s) 404, 1095
MspR9I CCNGG 3 cut(s) 474, 622, 792
MvaI CCWGG 3 cut(s) 474, 622, 792
MwoI GCNNNNNNNGC 4 cut(s) 11, 521, 842, 1129
NcoI CCATGG 1 cut(s) 604
NdeII GATC 6 cut(s) 393, 406, 496, 688, 984, 1006
NlaIII CATG 5 cut(s) 512, 608, 686, 836, 881
NlaIV GGNNCC 2 cut(s) 309, 363
NmuCI GTSAC 2 cut(s) 371, 1084
PfeI GAWTC 2 cut(s) 348, 610
PflFI GACNNNGTC 1 cut(s) 231
PkrI GCNGC 8 cut(s) 38, 100, 340, 381, 455, 458, 526, 578
PleI GAGTC 1 cut(s) 736
PpsI GAGTC 1 cut(s) 736
PshBI ATTAAT 1 cut(s) 825
PsiI TTATAA 1 cut(s) 468
Psp124BI GAGCTC 2 cut(s) 140, 894
Psp6I CCWGG 3 cut(s) 472, 620, 790
PspGI CCWGG 3 cut(s) 472, 620, 790
PspN4I GGNNCC 2 cut(s) 309, 363
PspPI GGNCC 1 cut(s) 505
PstI CTGCAG 1 cut(s) 381
PsyI GACNNNGTC 1 cut(s) 231
PvuII CAGCTG 2 cut(s) 341, 456
RsaI GTAC 4 cut(s) 153, 309, 751, 1142
RsaNI GTAC 4 cut(s) 152, 308, 750, 1141
SacI GAGCTC 2 cut(s) 140, 894
SaqAI TTAA 3 cut(s) 123, 158, 825
SatI GCNGC 8 cut(s) 37, 99, 339, 380, 454, 457, 525, 577
Sau3AI GATC 6 cut(s) 393, 406, 496, 688, 984, 1006
Sau96I GGNCC 1 cut(s) 505
SchI GAGTC 1 cut(s) 737
ScrFI CCNGG 3 cut(s) 474, 622, 792
SduI GDGCHC 7 cut(s) 31, 140, 366, 894, 907, 1063, 1074
SexAI ACCWGGT 1 cut(s) 472
SfaNI GCATC 6 cut(s) 85, 411, 440, 502, 607, 1144
SfcI CTRYAG 1 cut(s) 377
SinI GGWCC 1 cut(s) 505
Sse9I AATT 7 cut(s) 74, 411, 492, 550, 597, 996, 1064
SsiI CCGC 6 cut(s) 45, 99, 182, 527, 845, 1041
SspI AATATT 2 cut(s) 212, 913
SspMI CTAG 3 cut(s) 294, 629, 740
SstI GAGCTC 2 cut(s) 140, 894
StyD4I CCNGG 3 cut(s) 472, 620, 790
StyI CCWWGG 2 cut(s) 604, 1145
TaaI ACNGT 1 cut(s) 1119
TaiI ACGT 3 cut(s) 12, 304, 584
TaqI TCGA 3 cut(s) 235, 733, 1009
TasI AATT 7 cut(s) 74, 411, 492, 550, 597, 996, 1064
TatI WGTACW 1 cut(s) 749
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 2 cut(s) 348, 610
Tru1I TTAA 3 cut(s) 123, 158, 825
Tru9I TTAA 3 cut(s) 123, 158, 825
TscAI CASTG 2 cut(s) 62, 752
TseFI GTSAC 2 cut(s) 371, 1084
TseI GCWGC 7 cut(s) 36, 338, 379, 453, 456, 524, 576
Tsp45I GTSAC 2 cut(s) 371, 1084
TspDTI ATGAA 6 cut(s) 504, 606, 738, 887, 965, 1116
TspRI CASTG 2 cut(s) 62, 752
Tth111I GACNNNGTC 1 cut(s) 231
VneI GTGCAC 1 cut(s) 903
VpaK11BI GGWCC 1 cut(s) 505
VspI ATTAAT 1 cut(s) 825
XapI RAATTY 1 cut(s) 996
XspI CTAG 3 cut(s) 294, 629, 740
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.