FvH4_7g11370

zf-MYND-like zinc finger, mRNA-binding

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
10570537 .. 10577648
7112 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11370.t1

Sequence Viewer

Length: 1170 bp
ATGGCCGACGTCGCTACCCTCTCCTGTGCTCGCTGCAGCAAACCCGCCAATCTTCAGTGCCCCAAGTGTGTGGAGTTGAAGCTTCCTCGTGAAGCTGCTGCTTTCTGCACTCAGGATTGTTTTAAGGCGTCGTGGAGCTCGCATAAATCGGTACATGTAAAGGCGAAGCAGTCAGATGGGACGGGGAGTGCGGAGAATGAAGGCTGGCTATATTGTATGAAGAAAGGACAGAATCGATCTCCGAAACTTCCTTATTTTGAATGGACTGGGACATTGAGGCCATATCCTATATCTAGTAAGCGTGTGGTACCTTCTCATATTAATCTACCTGATTGGGCAGCTGATGGAATCCCAAAAGAGGAGCCTAGTAGTGACCTCCAGCGTATTGTTGAGATCAAGACTCCAGATCAAATTGAGAGGATGCGAGAAACTTGTCGAATTGCAAGAGAGGTTTTGGATGCAGCTGCTCGTGTCATACAGCCTGGTATCACGACTGATGAAATTGATAGGGTGGTCCATGATGCTACTATTGCTGCGGGTGGATATCCATCTCCCCTCAATTATCATTTTTTCCCAAAGTCTTGCTGCACGTCAGTCAATGAAGTAATTTGCCATGGGATTCCTGATGCCAGGAAATTAGAAGATGGTGATATCGTCAATGTTGACATAAGTGTGTATTACAAAGGCGTCCATGCTGATCTCAATGATACGTACTTTGTGGGAAATGTTGATGAAGAGTCTCAACGGCTAGTACAGTGTACTTACGAGTGCTTGGAAAAAGCAATAGCCATTGCAAAACCTGGAGTTAGATTTCGTGAAGTTGGAGATGTCATTAATCGCCATGCTACAATGGCAGGATTCTCTGTGGTGAAATCATATTGTGGTCATGGTATAGGGGAGCTCTTTCATTGTGCACCAGATATTCCTCACTATGCAAGAAATAAAGCAGTTGGAGTGATGAAAGCTGGGCAAACTTTCACGATTGAACCAATGATCAATGCAGGGGTTTGGCGTGATCGAATGTGGCCTGATGGATGGACTGATGTTACCGCAGATGGGAAACGAAGTGCTCAATTCGAGCACACACTTCTGGTGACAGAGACTGGAGTTGAAGTTCTTACAGCACGGTTGCCTTCATCGCCAAAATTGTATCCTTGGTTAGAAGTATGA

Protein Analysis

390

Amino Acids

43.18

Weight (kDa)

6.32

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C6H2 PF15801 10 - 53 2.8e-14 zf-MYND-like zinc finger, mRNA-binding
Peptidase_M24 PF00557 139 - 367 1.9e-55 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
Acc65I GGTACC 1 cut(s) 307
AccB1I GGYRCC 1 cut(s) 307
AciI CCGC 4 cut(s) 45, 191, 536, 1050
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 38
AcyI GRCGYC 3 cut(s) 9, 128, 687
AfaI GTAC 5 cut(s) 153, 309, 713, 753, 760
AfiI CCNNNNNNNGG 2 cut(s) 358, 1056
AflIII ACRYGT 1 cut(s) 154
AgsI TTSAA 4 cut(s) 79, 260, 986, 1112
AjiI CACGTC 1 cut(s) 591
AjnI CCWGG 3 cut(s) 481, 629, 799
AloI GAACNNNNNNTCC 2 cut(s) 1098, 1130
AluBI AGCT 7 cut(s) 82, 95, 138, 341, 464, 901, 965
AluI AGCT 7 cut(s) 82, 95, 138, 341, 464, 901, 965
Alw21I GWGCWC 6 cut(s) 31, 140, 903, 916, 1072, 1083
Alw26I GTCTC 2 cut(s) 744, 1094
Alw44I GTGCAC 1 cut(s) 912
AlwNI CAGNNNCTG 1 cut(s) 1103
AoxI GGCC 3 cut(s) 3, 278, 1025
ApaLI GTGCAC 1 cut(s) 912
ApeKI GCWGC 9 cut(s) 33, 36, 95, 98, 338, 461, 464, 533, 585
AseI ATTAAT 2 cut(s) 321, 834
Asp718I GGTACC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 514
AsuHPI GGTGA 3 cut(s) 659, 880, 1105
AvaII GGWCC 1 cut(s) 514
BaeGI GKGCMC 2 cut(s) 62, 916
BanI GGYRCC 1 cut(s) 307
BanII GRGCYC 2 cut(s) 140, 903
BauI CACGAG 2 cut(s) 87, 468
Bbv12I GWGCWC 6 cut(s) 31, 140, 903, 916, 1072, 1083
BbvI GCAGC 9 cut(s) 20, 48, 82, 85, 350, 451, 473, 520, 572
BccI CCATC 7 cut(s) 170, 338, 556, 638, 1025, 1029, 1049
BceAI ACGGC 1 cut(s) 761
BciT130I CCWGG 3 cut(s) 483, 631, 801
BciVI GTATCC 1 cut(s) 1161
BclI TGATCA 1 cut(s) 993
BcoDI GTCTC 2 cut(s) 744, 1094
BfaI CTAG 3 cut(s) 294, 366, 749
BfmI CTRYAG 1 cut(s) 34
BfuI GTATCC 1 cut(s) 1161
BisI GCNGC 9 cut(s) 34, 37, 96, 99, 339, 462, 465, 534, 586
BlsI GCNGC 9 cut(s) 35, 38, 97, 100, 340, 463, 466, 535, 587
Bme1390I CCNGG 3 cut(s) 483, 631, 801
Bme18I GGWCC 1 cut(s) 514
BmgBI CACGTC 1 cut(s) 591
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 2 cut(s) 309, 363
BmrFI CCNGG 3 cut(s) 483, 631, 801
BmrI ACTGGG 1 cut(s) 276
BmsI GCATC 4 cut(s) 411, 448, 511, 616
BmuI ACTGGG 1 cut(s) 276
BpmI CTGGAG 4 cut(s) 362, 387, 822, 1125
Bsa29I ATCGAT 1 cut(s) 235
BsaAI YACGTR 1 cut(s) 711
BsaBI GATNNNNATC 1 cut(s) 547
BsaHI GRCGYC 3 cut(s) 9, 128, 687
BsaJI CCNNGG 2 cut(s) 613, 1154
BsaXI ACNNNNNCTCC 2 cut(s) 1098, 1128
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 1056
Bse1I ACTGG 2 cut(s) 271, 1108
Bse3DI GCAATG 1 cut(s) 789
Bse8I GATNNNNATC 1 cut(s) 547
BseBI CCWGG 3 cut(s) 483, 631, 801
BseCI ATCGAT 1 cut(s) 235
BseDI CCNNGG 2 cut(s) 613, 1154
BseGI GGATG 3 cut(s) 426, 463, 1040
BseJI GATNNNNATC 1 cut(s) 547
BseLI CCNNNNNNNGG 2 cut(s) 358, 1056
BseMI GCAATG 1 cut(s) 789
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 2 cut(s) 271, 1108
BseRI GAGGAG 1 cut(s) 374
BseSI GKGCMC 2 cut(s) 62, 916
BseXI GCAGC 9 cut(s) 20, 48, 82, 85, 350, 451, 473, 520, 572
BseYI CCCAGC 1 cut(s) 965
BsgI GTGCAG 2 cut(s) 91, 571
BshFI GGCC 3 cut(s) 5, 280, 1027
BshNI GGYRCC 1 cut(s) 307
BshVI ATCGAT 1 cut(s) 235
BsiHKAI GWGCWC 6 cut(s) 31, 140, 903, 916, 1072, 1083
BslFI GGGAC 2 cut(s) 193, 283
BslI CCNNNNNNNGG 2 cut(s) 358, 1056
BsmAI GTCTC 2 cut(s) 744, 1094
BsmFI GGGAC 2 cut(s) 193, 283
BsnI GGCC 3 cut(s) 5, 280, 1027
Bsp1286I GDGCHC 7 cut(s) 31, 62, 140, 903, 916, 1072, 1083
Bsp143I GATC 6 cut(s) 236, 393, 406, 697, 993, 1015
Bsp19I CCATGG 1 cut(s) 613
BspACI CCGC 4 cut(s) 45, 191, 536, 1050
BspANI GGCC 3 cut(s) 5, 280, 1027
BspCNI CTCAG 1 cut(s) 124
BspDI ATCGAT 1 cut(s) 235
BspLI GGNNCC 2 cut(s) 309, 363
BspMAI CTGCAG 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 789
BsrI ACTGG 2 cut(s) 271, 1108
BssECI CCNNGG 2 cut(s) 613, 1154
BssMI GATC 6 cut(s) 236, 393, 406, 697, 993, 1015
BssNI GRCGYC 3 cut(s) 9, 128, 687
BssSI CACGAG 2 cut(s) 87, 468
BssT1I CCWWGG 2 cut(s) 613, 1154
Bst2BI CACGAG 2 cut(s) 87, 468
Bst2UI CCWGG 3 cut(s) 483, 631, 801
Bst4CI ACNGT 2 cut(s) 756, 1128
Bst6I CTCTTC 1 cut(s) 729
BstACI GRCGYC 3 cut(s) 9, 128, 687
BstBAI YACGTR 1 cut(s) 711
BstC8I GCNNGC 3 cut(s) 31, 140, 206
BstDEI CTNAG 1 cut(s) 111
BstDSI CCRYGG 1 cut(s) 613
BstF5I GGATG 3 cut(s) 426, 463, 1040
BstKTI GATC 6 cut(s) 239, 396, 409, 700, 996, 1018
BstMAI GTCTC 2 cut(s) 744, 1094
BstMBI GATC 6 cut(s) 236, 393, 406, 697, 993, 1015
BstMWI GCNNNNNNNGC 4 cut(s) 11, 530, 851, 1138
BstNI CCWGG 3 cut(s) 483, 631, 801
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 3 cut(s) 481, 629, 799
BstSFI CTRYAG 1 cut(s) 34
BstSLI GKGCMC 2 cut(s) 62, 916
BstSNI TACGTA 1 cut(s) 711
BstV1I GCAGC 9 cut(s) 20, 48, 82, 85, 350, 451, 473, 520, 572
BstXI CCANNNNNNTGG 1 cut(s) 70
Bsu15I ATCGAT 1 cut(s) 235
BsuI GTATCC 1 cut(s) 1161
BsuRI GGCC 3 cut(s) 5, 280, 1027
BsuTUI ATCGAT 1 cut(s) 235
BtgI CCRYGG 1 cut(s) 613
BtgZI GCGATG 1 cut(s) 1122
BtrI CACGTC 1 cut(s) 591
BtsCI GGATG 3 cut(s) 426, 463, 1040
BtsIMutI CAGTG 2 cut(s) 62, 761
Cac8I GCNNGC 3 cut(s) 31, 140, 206
CaiI CAGNNNCTG 1 cut(s) 1103
Cfr13I GGNCC 1 cut(s) 514
ClaI ATCGAT 1 cut(s) 235
CseI GACGC 2 cut(s) 117, 676
Csp6I GTAC 5 cut(s) 152, 308, 712, 752, 759
CviAII CATG 6 cut(s) 155, 518, 614, 692, 842, 887
CviQI GTAC 5 cut(s) 152, 308, 712, 752, 759
DdeI CTNAG 1 cut(s) 111
DpnI GATC 6 cut(s) 238, 395, 408, 699, 995, 1017
DpnII GATC 6 cut(s) 236, 393, 406, 697, 993, 1015
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 729
EarI CTCTTC 1 cut(s) 729
Ecl136II GAGCTC 2 cut(s) 138, 901
Eco105I TACGTA 1 cut(s) 711
Eco130I CCWWGG 2 cut(s) 613, 1154
Eco24I GRGCYC 2 cut(s) 140, 903
Eco32I GATATC 2 cut(s) 545, 652
Eco47I GGWCC 1 cut(s) 514
Eco53kI GAGCTC 2 cut(s) 138, 901
Eco57I CTGAAG 1 cut(s) 38
EcoICRI GAGCTC 2 cut(s) 138, 901
EcoRII CCWGG 3 cut(s) 481, 629, 799
EcoRV GATATC 2 cut(s) 545, 652
EcoT14I CCWWGG 2 cut(s) 613, 1154
EcoT38I GRGCYC 2 cut(s) 140, 903
ErhI CCWWGG 2 cut(s) 613, 1154
FaeI CATG 6 cut(s) 158, 521, 617, 695, 845, 890
FaqI GGGAC 2 cut(s) 193, 283
FatI CATG 6 cut(s) 154, 517, 613, 691, 841, 886
FauI CCCGC 2 cut(s) 52, 529
FbaI TGATCA 1 cut(s) 993
Fnu4HI GCNGC 9 cut(s) 34, 37, 96, 99, 339, 462, 465, 534, 586
FokI GGATG 3 cut(s) 433, 470, 1047
FriOI GRGCYC 2 cut(s) 140, 903
Fsp4HI GCNGC 9 cut(s) 34, 37, 96, 99, 339, 462, 465, 534, 586
FspBI CTAG 3 cut(s) 294, 366, 749
GluI GCNGC 9 cut(s) 34, 37, 96, 99, 339, 462, 465, 534, 586
GsaI CCCAGC 1 cut(s) 969
GsuI CTGGAG 4 cut(s) 362, 387, 822, 1125
HaeIII GGCC 3 cut(s) 5, 280, 1027
HgaI GACGC 2 cut(s) 117, 676
Hin1I GRCGYC 3 cut(s) 9, 128, 687
Hin1II CATG 6 cut(s) 158, 521, 617, 695, 845, 890
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 6 cut(s) 232, 348, 400, 619, 737, 858
HphI GGTGA 3 cut(s) 659, 880, 1105
Hpy166II GTNNAC 3 cut(s) 664, 759, 914
Hpy188I TCNGA 2 cut(s) 175, 243
Hpy188III TCNNGA 8 cut(s) 89, 113, 397, 404, 490, 623, 815, 979
Hpy8I GTNNAC 3 cut(s) 664, 759, 914
Hpy99I CGWCG 3 cut(s) 11, 14, 133
HpyAV CCTTC 3 cut(s) 194, 321, 1143
HpyCH4III ACNGT 2 cut(s) 756, 1128
HpyCH4IV ACGT 3 cut(s) 9, 590, 710
HpyCH4V TGCA 9 cut(s) 36, 108, 443, 461, 588, 794, 914, 935, 1001
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 530, 851, 1138
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 3 cut(s) 9, 590, 710
Hsp92I GRCGYC 3 cut(s) 9, 128, 687
Hsp92II CATG 6 cut(s) 158, 521, 617, 695, 845, 890
KpnI GGTACC 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 993
Kzo9I GATC 6 cut(s) 236, 393, 406, 697, 993, 1015
LmnI GCTCC 3 cut(s) 135, 361, 898
Lsp1109I GCAGC 9 cut(s) 20, 48, 82, 85, 350, 451, 473, 520, 572
LweI GCATC 4 cut(s) 411, 448, 511, 616
MaeI CTAG 3 cut(s) 294, 366, 749
MaeII ACGT 3 cut(s) 9, 590, 710
MaeIII GTNAC 3 cut(s) 371, 1045, 1093
MalI GATC 6 cut(s) 238, 395, 408, 699, 995, 1017
MboI GATC 6 cut(s) 236, 393, 406, 697, 993, 1015
MboII GAAGA 4 cut(s) 44, 232, 653, 746
MhlI GDGCHC 7 cut(s) 31, 62, 140, 903, 916, 1072, 1083
MluCI AATT 8 cut(s) 411, 438, 501, 559, 606, 635, 1073, 1145
MlyI GAGTC 2 cut(s) 394, 746
MmeI TCCRAC 2 cut(s) 802, 931
MnlI CCTC 9 cut(s) 29, 96, 270, 352, 386, 411, 442, 566, 936
MseI TTAA 3 cut(s) 123, 321, 834
MslI CAYNNNNRTG 1 cut(s) 671
MspA1I CMGCKG 2 cut(s) 341, 464
MspR9I CCNGG 3 cut(s) 483, 631, 801
MvaI CCWGG 3 cut(s) 483, 631, 801
MwoI GCNNNNNNNGC 4 cut(s) 11, 530, 851, 1138
NcoI CCATGG 1 cut(s) 613
NdeII GATC 6 cut(s) 236, 393, 406, 697, 993, 1015
NlaIII CATG 6 cut(s) 158, 521, 617, 695, 845, 890
NlaIV GGNNCC 2 cut(s) 309, 363
NmuCI GTSAC 2 cut(s) 371, 1093
NspI RCATGY 1 cut(s) 158
PciI ACATGT 1 cut(s) 154
PfeI GAWTC 4 cut(s) 232, 348, 619, 858
PkrI GCNGC 9 cut(s) 35, 38, 97, 100, 340, 463, 466, 535, 587
PleI GAGTC 2 cut(s) 394, 745
PpsI GAGTC 2 cut(s) 394, 745
Ppu21I YACGTR 1 cut(s) 711
PscI ACATGT 1 cut(s) 154
PshBI ATTAAT 2 cut(s) 321, 834
Psp124BI GAGCTC 2 cut(s) 140, 903
Psp6I CCWGG 3 cut(s) 481, 629, 799
PspFI CCCAGC 1 cut(s) 965
PspGI CCWGG 3 cut(s) 481, 629, 799
PspN4I GGNNCC 2 cut(s) 309, 363
PspPI GGNCC 1 cut(s) 514
PstI CTGCAG 1 cut(s) 38
PstNI CAGNNNCTG 1 cut(s) 1103
PvuII CAGCTG 2 cut(s) 341, 464
RsaI GTAC 5 cut(s) 153, 309, 713, 753, 760
RsaNI GTAC 5 cut(s) 152, 308, 712, 752, 759
RseI CAYNNNNRTG 1 cut(s) 671
SacI GAGCTC 2 cut(s) 140, 903
SaqAI TTAA 3 cut(s) 123, 321, 834
SatI GCNGC 9 cut(s) 34, 37, 96, 99, 339, 462, 465, 534, 586
Sau3AI GATC 6 cut(s) 236, 393, 406, 697, 993, 1015
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 2 cut(s) 394, 746
ScrFI CCNGG 3 cut(s) 483, 631, 801
SduI GDGCHC 7 cut(s) 31, 62, 140, 903, 916, 1072, 1083
SfaNI GCATC 4 cut(s) 411, 448, 511, 616
SfcI CTRYAG 1 cut(s) 34
SinI GGWCC 1 cut(s) 514
SmiMI CAYNNNNRTG 1 cut(s) 671
SnaBI TACGTA 1 cut(s) 711
Sse9I AATT 8 cut(s) 411, 438, 501, 559, 606, 635, 1073, 1145
SsiI CCGC 4 cut(s) 45, 191, 536, 1050
SspMI CTAG 3 cut(s) 294, 366, 749
SstI GAGCTC 2 cut(s) 140, 903
StyD4I CCNGG 3 cut(s) 481, 629, 799
StyI CCWWGG 2 cut(s) 613, 1154
TaaI ACNGT 2 cut(s) 756, 1128
TaiI ACGT 3 cut(s) 12, 593, 713
TaqI TCGA 4 cut(s) 235, 436, 1018, 1077
TasI AATT 8 cut(s) 411, 438, 501, 559, 606, 635, 1073, 1145
TatI WGTACW 2 cut(s) 751, 758
TfiI GAWTC 4 cut(s) 232, 348, 619, 858
Tru1I TTAA 3 cut(s) 123, 321, 834
Tru9I TTAA 3 cut(s) 123, 321, 834
TscAI CASTG 2 cut(s) 62, 761
TseFI GTSAC 2 cut(s) 371, 1093
TseI GCWGC 9 cut(s) 33, 36, 95, 98, 338, 461, 464, 533, 585
Tsp45I GTSAC 2 cut(s) 371, 1093
TspDTI ATGAA 8 cut(s) 213, 233, 513, 615, 747, 896, 974, 1125
TspRI CASTG 2 cut(s) 62, 761
VneI GTGCAC 1 cut(s) 912
VpaK11BI GGWCC 1 cut(s) 514
VspI ATTAAT 2 cut(s) 321, 834
XceI RCATGY 1 cut(s) 158
XspI CTAG 3 cut(s) 294, 366, 749
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.