Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003129

Physical Location & Seq

Genomic Coordinates Reverse (-)

24030334 .. 24033120

Gene Structure 2787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028538

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCAGCTGCTCGTGTCATACGACCTGGTATCACGACTGATGAAATTGATCGGGTGGTCCATGATGCTACTATTGCTGCGGGTGGATATCCATCTCCCCTCAATTATCATTTTTTCCCAAAGTCTTGCTGCACGTAGGTCAGTCAATGAAGTAATTTGCCATGGGATTCCTGATGCCAGGAAATTAGAGGATGGTGATATCGTCAATGTTGATGTGACTGTGTATTACAAGGGTGTCCATGGTGATCTCAATGATACATACTTTGTGGGAAATGTTGATGAAGAGTCTCGACGGCTAGTGCAGTGTACTTATGAGTGCTTGGAAAAAGCAATATCCATTGTAAAACCTGGAGTTAGATTTCGTGAAGTTGGAGAAGTCATTAATCGCCATGCTACGATGGCGGGATTTTCTGTGGTGAAATCATATTGTGGTCATGGTATAGGGGAGCTCTTTCATTGTGCACCAAATATTCCTCACTATGCAAGAAATAAAGCAGTTGGAGTGATGAAAGCTGGACAAACTTTTACGATTGAACCAATGATCAATGCAGGAATTTGGCGTGATCGAATGTGGCCTGACGGGTGGACTGTTGTTACCGCAGATGGAAAACGAAGTGCTCAATTTGAGCACACACTTCTGGTGACTGAGACTGGAGTTGAAGTTCTTACAGCACGGTTGCCTTCATCGCCAAAAGTGTACCCTTGGTTAGATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24 zf-C6H2

Protein Analysis

239

Amino Acids

26.66

Weight (kDa)

6.7

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	47 - 216	2.3e-41	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45240 AT2G45240
fragaria_vesca	FvH4_7g11350 FvH4_7g11370
malus_domestica	MD02G1206000.v1.1 MD07G1118400.v1.1 MD07G1118600.v1.1
prunus_persica	Prupe.2G141300_v2.0.a1
pyrus_communis	pycom02g16990 pycom07g10610
rosa_chinensis	RchiOBHm_Chr1g0349561 RchiOBHm_Chr1g0349651 RchiOBHm_Chr4g0403521 RchiOBHm_Chr7g0223151
rosa_laevigata	RLG00000028538 RLG00000028542
rosa_multiflora	Rmu_sc0001593.1_g000008 Rmu_sc0002495.1_g000024 Rmu_sc0002495.1_g000038 Rmu_sc0006074.1_g000011 Rmu_sc0012293.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305410 Rroxscaffold_4G00305430
rosa_rugosa	Rorug01G0204500 Rorug05G0164500
rosa_samantha	Rh1AG221900 Rh1AG222400 Rh1BG188000 Rh1BG188300 Rh1CG206700 Rh1CG206800 Rh1CG207100 Rh1DG217400 Rh1DG217600
rosa_wichuraiana	Rw1G018860 Rw1G018910 Rw1G018950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	79, 401, 597
AcsI	RAATTY	1 cut(s)	552
AfaI	GTAC	2 cut(s)	307, 698
AgsI	TTSAA	2 cut(s)	533, 659
AjnI	CCWGG	3 cut(s)	24, 176, 346
AloI	GAACNNNNNNTCC	2 cut(s)	645, 677
AluBI	AGCT	3 cut(s)	7, 448, 512
AluI	AGCT	3 cut(s)	7, 448, 512
Alw21I	GWGCWC	4 cut(s)	450, 463, 619, 630
Alw26I	GTCTC	2 cut(s)	291, 641
Alw44I	GTGCAC	1 cut(s)	459
AoxI	GGCC	1 cut(s)	572
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	4 cut(s)	4, 7, 76, 128
ApoI	RAATTY	1 cut(s)	552
AseI	ATTAAT	1 cut(s)	381
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	4 cut(s)	206, 254, 427, 652
AvaII	GGWCC	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	450
BauI	CACGAG	1 cut(s)	11
Bbv12I	GWGCWC	4 cut(s)	450, 463, 619, 630
BbvI	GCAGC	3 cut(s)	16, 63, 115
BccI	CCATC	4 cut(s)	99, 185, 391, 596
BceAI	ACGGC	1 cut(s)	308
BciT130I	CCWGG	3 cut(s)	26, 178, 348
BclI	TGATCA	1 cut(s)	540
BcoDI	GTCTC	2 cut(s)	291, 641
BfaI	CTAG	1 cut(s)	296
BisI	GCNGC	4 cut(s)	5, 8, 77, 129
BlsI	GCNGC	4 cut(s)	6, 9, 78, 130
Bme1390I	CCNGG	3 cut(s)	26, 178, 348
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmrFI	CCNGG	3 cut(s)	26, 178, 348
BmsI	GCATC	3 cut(s)	54, 163, 700
BpmI	CTGGAG	2 cut(s)	369, 672
BsaAI	YACGTR	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	160, 238, 701
BsaXI	ACNNNNNCTCC	2 cut(s)	645, 675
Bse1I	ACTGG	1 cut(s)	655
Bse8I	GATNNNNATC	1 cut(s)	90
BseBI	CCWGG	3 cut(s)	26, 178, 348
BseDI	CCNNGG	3 cut(s)	160, 238, 701
BseGI	GGATG	1 cut(s)	196
BseJI	GATNNNNATC	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	636
BseNI	ACTGG	1 cut(s)	655
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	3 cut(s)	16, 63, 115
BsgI	GTGCAG	2 cut(s)	114, 320
BshFI	GGCC	1 cut(s)	574
BsiHKAI	GWGCWC	4 cut(s)	450, 463, 619, 630
BsmAI	GTCTC	2 cut(s)	291, 641
BsnI	GGCC	1 cut(s)	574
Bsp1286I	GDGCHC	4 cut(s)	450, 463, 619, 630
Bsp143I	GATC	4 cut(s)	48, 244, 540, 562
Bsp19I	CCATGG	2 cut(s)	160, 238
BspACI	CCGC	3 cut(s)	79, 401, 597
BspANI	GGCC	1 cut(s)	574
BspCNI	CTCAG	1 cut(s)	637
BsrI	ACTGG	1 cut(s)	655
BssECI	CCNNGG	3 cut(s)	160, 238, 701
BssMI	GATC	4 cut(s)	48, 244, 540, 562
BssSI	CACGAG	1 cut(s)	11
BssT1I	CCWWGG	3 cut(s)	160, 238, 701
Bst2BI	CACGAG	1 cut(s)	11
Bst2UI	CCWGG	3 cut(s)	26, 178, 348
Bst4CI	ACNGT	3 cut(s)	220, 589, 675
Bst6I	CTCTTC	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	645
BstDSI	CCRYGG	2 cut(s)	160, 238
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	4 cut(s)	51, 247, 543, 565
BstMAI	GTCTC	2 cut(s)	291, 641
BstMBI	GATC	4 cut(s)	48, 244, 540, 562
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 398, 685
BstNI	CCWGG	3 cut(s)	26, 178, 348
BstSCI	CCNGG	3 cut(s)	24, 176, 346
BstSLI	GKGCMC	1 cut(s)	463
BstV1I	GCAGC	3 cut(s)	16, 63, 115
BsuRI	GGCC	1 cut(s)	574
BtgI	CCRYGG	2 cut(s)	160, 238
BtgZI	GCGATG	1 cut(s)	669
BtsCI	GGATG	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	308
BtsIMutI	CAGTG	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	57
CsiI	ACCWGGT	1 cut(s)	24
Csp6I	GTAC	2 cut(s)	306, 697
CviAII	CATG	5 cut(s)	61, 161, 239, 389, 434
CviJI	RGCY	5 cut(s)	7, 295, 448, 512, 574
CviKI_1	RGCY	5 cut(s)	7, 295, 448, 512, 574
CviQI	GTAC	2 cut(s)	306, 697
DdeI	CTNAG	1 cut(s)	645
DpnI	GATC	4 cut(s)	50, 246, 542, 564
DpnII	GATC	4 cut(s)	48, 244, 540, 562
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	3 cut(s)	160, 238, 701
Eco24I	GRGCYC	1 cut(s)	450
Eco32I	GATATC	2 cut(s)	88, 199
Eco47I	GGWCC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	448
EcoRII	CCWGG	3 cut(s)	24, 176, 346
EcoRV	GATATC	2 cut(s)	88, 199
EcoT14I	CCWWGG	3 cut(s)	160, 238, 701
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	3 cut(s)	160, 238, 701
FaeI	CATG	5 cut(s)	64, 164, 242, 392, 437
FatI	CATG	5 cut(s)	60, 160, 238, 388, 433
FauI	CCCGC	2 cut(s)	72, 394
FbaI	TGATCA	1 cut(s)	540
Fnu4HI	GCNGC	4 cut(s)	5, 8, 77, 129
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	4 cut(s)	5, 8, 77, 129
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	4 cut(s)	5, 8, 77, 129
GsuI	CTGGAG	2 cut(s)	369, 672
HaeIII	GGCC	1 cut(s)	574
Hin1II	CATG	5 cut(s)	64, 164, 242, 392, 437
HinfI	GANTC	2 cut(s)	166, 284
HphI	GGTGA	4 cut(s)	206, 254, 427, 652
Hpy166II	GTNNAC	4 cut(s)	306, 461, 585, 697
Hpy188III	TCNNGA	4 cut(s)	33, 170, 288, 362
Hpy8I	GTNNAC	4 cut(s)	306, 461, 585, 697
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	1 cut(s)	690
HpyCH4III	ACNGT	3 cut(s)	220, 589, 675
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	6 cut(s)	4, 131, 301, 461, 482, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 398, 685
HpyF3I	CTNAG	1 cut(s)	645
HpySE526I	ACGT	1 cut(s)	133
Hsp92II	CATG	5 cut(s)	64, 164, 242, 392, 437
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	4 cut(s)	48, 244, 540, 562
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	3 cut(s)	16, 63, 115
LweI	GCATC	3 cut(s)	54, 163, 700
MabI	ACCWGGT	1 cut(s)	24
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	1 cut(s)	133
MaeIII	GTNAC	3 cut(s)	214, 592, 640
MalI	GATC	4 cut(s)	50, 246, 542, 564
MboI	GATC	4 cut(s)	48, 244, 540, 562
MboII	GAAGA	1 cut(s)	293
MhlI	GDGCHC	4 cut(s)	450, 463, 619, 630
MluCI	AATT	6 cut(s)	44, 102, 153, 182, 552, 620
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	2 cut(s)	349, 478
MnlI	CCTC	3 cut(s)	109, 181, 483
MseI	TTAA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	7
MspR9I	CCNGG	3 cut(s)	26, 178, 348
MvaI	CCWGG	3 cut(s)	26, 178, 348
MwoI	GCNNNNNNNGC	3 cut(s)	73, 398, 685
NcoI	CCATGG	2 cut(s)	160, 238
NdeII	GATC	4 cut(s)	48, 244, 540, 562
NlaIII	CATG	5 cut(s)	64, 164, 242, 392, 437
NmuCI	GTSAC	2 cut(s)	214, 640
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	166
PkrI	GCNGC	4 cut(s)	6, 9, 78, 130
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Ppu21I	YACGTR	1 cut(s)	134
PshBI	ATTAAT	1 cut(s)	381
Psp124BI	GAGCTC	1 cut(s)	450
Psp6I	CCWGG	3 cut(s)	24, 176, 346
PspGI	CCWGG	3 cut(s)	24, 176, 346
PspPI	GGNCC	1 cut(s)	57
PvuII	CAGCTG	1 cut(s)	7
RsaI	GTAC	2 cut(s)	307, 698
RsaNI	GTAC	2 cut(s)	306, 697
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	4 cut(s)	5, 8, 77, 129
Sau3AI	GATC	4 cut(s)	48, 244, 540, 562
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	3 cut(s)	26, 178, 348
SduI	GDGCHC	4 cut(s)	450, 463, 619, 630
SetI	ASST	7 cut(s)	9, 27, 136, 140, 349, 450, 514
SexAI	ACCWGGT	1 cut(s)	24
SfaNI	GCATC	3 cut(s)	54, 163, 700
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	6 cut(s)	44, 102, 153, 182, 552, 620
SsiI	CCGC	3 cut(s)	79, 401, 597
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	1 cut(s)	296
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	3 cut(s)	24, 176, 346
StyI	CCWWGG	3 cut(s)	160, 238, 701
TaaI	ACNGT	3 cut(s)	220, 589, 675
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	2 cut(s)	289, 565
TasI	AATT	6 cut(s)	44, 102, 153, 182, 552, 620
TatI	WGTACW	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	1 cut(s)	308
TseFI	GTSAC	2 cut(s)	214, 640
TseI	GCWGC	4 cut(s)	4, 7, 76, 128
Tsp45I	GTSAC	2 cut(s)	214, 640
TspDTI	ATGAA	6 cut(s)	56, 162, 294, 443, 521, 672
TspRI	CASTG	1 cut(s)	308
VneI	GTGCAC	1 cut(s)	459
VpaK11BI	GGWCC	1 cut(s)	57
VspI	ATTAAT	1 cut(s)	381
XapI	RAATTY	1 cut(s)	552
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.