Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003129

Physical Location & Seq

Genomic Coordinates Forward (+)

44803692 .. 44808349

Gene Structure 4658 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19980

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGTTCTTTCCTCTCAAAAGCCCCACCGAAGTCGGGGTTGGAACCCTAAACCCGAACACAGCAACCCAACTGCACTCAACTGTGCCGTTTCTGACTCTCTCCGTGACTCTGTGTGTCGGTCTCCGCAGTCTCTAACTCTCCGTCTCCGCCTCTCCGGTCTCCCATCTCCGAGTCTCCGTCTCCGAGCTCCAGCTACTTTCCCTCTCAACTCAAACCCTAGCCCCTCCTCTTCTTGTCTCACAGCTCGCCTGGGGCTACTGAATGCGACCATGGCTGACGTCGCCACCCAGTCGTGTTCTCGTTGCAGCAAACCCGCCAATCTTCAGTGTCCCAAGTGTGTGGAATTGAAGCTTCCTCGTGAAGATGCCGCTTTCTGCACTCAGGATTGTTTTAAGGCTTCATGGAGCTTGCATAAATCGGTACATTTAAAGGCCAAGCAGTCCAATAGGGCGGGAAATCCAGAGAACGAAGGCTGGCAATATTGCATGAAGAAAGGACAGGGTCGAACTCCGAAACTTCCTTATTTTGATTGGACAGGGACATTGAGACCATATCCTATATCTAGTAAGTGTGTGGTACCTTCTCATATTGATCTACCTGATTGGGCAGCTGATGGAATCCCAAAAGAGGAACCCAGTAGTGACCTGCAGCGTGTTATTGAGATCAAAACTCCGGATCAAATTGAGAGGATGCGAGAAACTTGTCGAAAAAAGATTGGCTTTCAATTCACCGAAGCTGAGTGTCTCAAGATTGATGTAAAAGAGAAGAAAGTCTATTGCCAATCTAATTTAGAGAATGGGGAAAAAGAAATTTTAGTGGACTACGACTACCTTGTAATATTTGTGGGAGCAAATGTTAATACATTCAATACTCCTGGTGTGATGGAGAACTGCCATTTCTTGAAGGAAGTAGAAGATGCCCAGAAGATACGAAGAACTGTTATTGAATGCTTTGAAAAGGCTAGCCTGCCAACTGTAAATGATGAGGAGAAGGAGAAAATTCTTCATTTTGCCGTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24 zf-C6H2

Protein Analysis

340

Amino Acids

38.18

Weight (kDa)

8.62

Isoelectric Point (pI)

58.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C6H2	PF15801	100 - 143	5.1e-14	zf-MYND-like zinc finger, mRNA-binding
Pyr_redox_2	PF07992	241 - 313	1.7e-08	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45240 AT2G45240
fragaria_vesca	FvH4_7g11350 FvH4_7g11370
malus_domestica	MD02G1206000.v1.1 MD07G1118400.v1.1 MD07G1118600.v1.1
prunus_persica	Prupe.2G141300_v2.0.a1
pyrus_communis	pycom02g16990 pycom07g10610
rosa_chinensis	RchiOBHm_Chr1g0349561 RchiOBHm_Chr1g0349651 RchiOBHm_Chr4g0403521 RchiOBHm_Chr7g0223151
rosa_laevigata	RLG00000028538 RLG00000028542
rosa_multiflora	Rmu_sc0001593.1_g000008 Rmu_sc0002495.1_g000024 Rmu_sc0002495.1_g000038 Rmu_sc0006074.1_g000011 Rmu_sc0012293.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305410 Rroxscaffold_4G00305430
rosa_rugosa	Rorug01G0204500 Rorug05G0164500
rosa_samantha	Rh1AG221900 Rh1AG222400 Rh1BG188000 Rh1BG188300 Rh1CG206700 Rh1CG206800 Rh1CG207100 Rh1DG217400 Rh1DG217600
rosa_wichuraiana	Rw1G018860 Rw1G018910 Rw1G018950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	282
Acc36I	ACCTGC	1 cut(s)	654
Acc65I	GGTACC	1 cut(s)	577
AccB1I	GGYRCC	1 cut(s)	577
AccIII	TCCGGA	1 cut(s)	673
AciI	CCGC	5 cut(s)	125, 148, 315, 369, 452
AclWI	GGATC	1 cut(s)	684
AcsI	RAATTY	2 cut(s)	810, 999
AcuI	CTGAAG	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	2 cut(s)	423, 579
AfiI	CCNNNNNNNGG	2 cut(s)	34, 628
AgsI	TTSAA	6 cut(s)	349, 725, 868, 904, 947, 956
AjnI	CCWGG	2 cut(s)	249, 874
AjuI	GAANNNNNNNTTGG	2 cut(s)	22, 54
AluBI	AGCT	7 cut(s)	188, 194, 245, 352, 408, 611, 737
AluI	AGCT	7 cut(s)	188, 194, 245, 352, 408, 611, 737
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	9 cut(s)	126, 135, 149, 164, 179, 185, 242, 541, 749
AlwI	GGATC	1 cut(s)	684
Aor13HI	TCCGGA	1 cut(s)	673
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	3 cut(s)	306, 608, 649
ApoI	RAATTY	2 cut(s)	810, 999
Asp718I	GGTACC	1 cut(s)	577
AsuHPI	GGTGA	1 cut(s)	721
AsuNHI	GCTAGC	1 cut(s)	962
BanI	GGYRCC	1 cut(s)	577
BanII	GRGCYC	1 cut(s)	190
BauI	CACGAG	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	3 cut(s)	318, 620, 661
BccI	CCATC	3 cut(s)	172, 608, 877
BceAI	ACGGC	2 cut(s)	71, 998
BciT130I	CCWGG	2 cut(s)	251, 876
BcoDI	GTCTC	9 cut(s)	126, 135, 149, 164, 179, 185, 242, 541, 749
BfaI	CTAG	3 cut(s)	219, 564, 963
BfmI	CTRYAG	1 cut(s)	647
BfuAI	ACCTGC	1 cut(s)	654
BisI	GCNGC	4 cut(s)	307, 369, 609, 650
BlsI	GCNGC	4 cut(s)	308, 370, 610, 651
Bme1390I	CCNGG	2 cut(s)	251, 876
BmiI	GGNNCC	3 cut(s)	44, 579, 633
BmrFI	CCNGG	2 cut(s)	251, 876
BmrI	ACTGGG	2 cut(s)	283, 630
BmsI	GCATC	3 cut(s)	355, 681, 907
BmtI	GCTAGC	1 cut(s)	966
BmuI	ACTGGG	2 cut(s)	283, 630
BpmI	CTGGAG	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	731
BsaHI	GRCGYC	1 cut(s)	279
BsaI	GGTCTC	3 cut(s)	126, 164, 541
BsaJI	CCNNGG	2 cut(s)	250, 270
BsaWI	WCCGGW	2 cut(s)	155, 673
BsaXI	ACNNNNNCTCC	2 cut(s)	840, 870
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 628
Bse1I	ACTGG	2 cut(s)	289, 636
BseAI	TCCGGA	1 cut(s)	673
BseBI	CCWGG	2 cut(s)	251, 876
BseDI	CCNNGG	2 cut(s)	250, 270
BseGI	GGATG	1 cut(s)	696
BseLI	CCNNNNNNNGG	2 cut(s)	34, 628
BseMII	CTCAG	2 cut(s)	395, 729
BseNI	ACTGG	2 cut(s)	289, 636
BseRI	GAGGAG	2 cut(s)	217, 1001
BseXI	GCAGC	3 cut(s)	318, 620, 661
BsgI	GTGCAG	2 cut(s)	57, 361
BshFI	GGCC	1 cut(s)	434
BshNI	GGYRCC	1 cut(s)	577
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	156, 674
BslFI	GGGAC	2 cut(s)	315, 553
BslI	CCNNNNNNNGG	2 cut(s)	34, 628
BsmAI	GTCTC	9 cut(s)	126, 135, 149, 164, 179, 185, 242, 541, 749
BsmBI	CGTCTC	2 cut(s)	149, 185
BsmFI	GGGAC	2 cut(s)	315, 553
BsmI	GAATGC	2 cut(s)	268, 953
BsnI	GGCC	1 cut(s)	434
Bso31I	GGTCTC	3 cut(s)	126, 164, 541
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp13I	TCCGGA	1 cut(s)	673
Bsp143I	GATC	3 cut(s)	592, 663, 676
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	5 cut(s)	125, 148, 315, 369, 452
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	2 cut(s)	394, 730
BspEI	TCCGGA	1 cut(s)	673
BspLI	GGNNCC	3 cut(s)	44, 579, 633
BspMAI	CTGCAG	1 cut(s)	651
BspMI	ACCTGC	1 cut(s)	654
BspOI	GCTAGC	1 cut(s)	966
BspPI	GGATC	1 cut(s)	684
BspT107I	GGYRCC	1 cut(s)	577
BspTNI	GGTCTC	3 cut(s)	126, 164, 541
BsrI	ACTGG	2 cut(s)	289, 636
BssECI	CCNNGG	2 cut(s)	250, 270
BssMI	GATC	3 cut(s)	592, 663, 676
BssNI	GRCGYC	1 cut(s)	279
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	251, 876
Bst4CI	ACNGT	3 cut(s)	83, 940, 976
Bst6I	CTCTTC	1 cut(s)	235
BstACI	GRCGYC	1 cut(s)	279
BstC8I	GCNNGC	5 cut(s)	247, 410, 476, 964, 968
BstDEI	CTNAG	2 cut(s)	381, 738
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	696
BstKTI	GATC	3 cut(s)	595, 666, 679
BstMAI	GTCTC	9 cut(s)	126, 135, 149, 164, 179, 185, 242, 541, 749
BstMBI	GATC	3 cut(s)	592, 663, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 281
BstNI	CCWGG	2 cut(s)	251, 876
BstSCI	CCNGG	2 cut(s)	249, 874
BstSFI	CTRYAG	1 cut(s)	647
BstV1I	GCAGC	3 cut(s)	318, 620, 661
BstXI	CCANNNNNNTGG	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	434
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	696
BtsIMutI	CAGTG	1 cut(s)	332
BveI	ACCTGC	1 cut(s)	654
Cac8I	GCNNGC	5 cut(s)	247, 410, 476, 964, 968
Csp6I	GTAC	2 cut(s)	422, 578
CviAII	CATG	3 cut(s)	271, 402, 487
CviQI	GTAC	2 cut(s)	422, 578
DdeI	CTNAG	2 cut(s)	381, 738
DpnI	GATC	3 cut(s)	594, 665, 678
DpnII	GATC	3 cut(s)	592, 663, 676
DraI	TTTAAA	1 cut(s)	429
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
EciI	GGCGGA	1 cut(s)	137
Ecl136II	GAGCTC	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	190
Eco31I	GGTCTC	3 cut(s)	126, 164, 541
Eco53kI	GAGCTC	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	249, 874
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	270
Esp3I	CGTCTC	2 cut(s)	149, 185
FaeI	CATG	3 cut(s)	274, 405, 490
FaiI	YATR	7 cut(s)	272, 403, 414, 488, 553, 560, 588
FalI	AAGNNNNNCTT	2 cut(s)	704, 736
FaqI	GGGAC	2 cut(s)	315, 553
FatI	CATG	3 cut(s)	270, 401, 486
FauI	CCCGC	2 cut(s)	322, 445
Fnu4HI	GCNGC	4 cut(s)	307, 369, 609, 650
FokI	GGATG	1 cut(s)	703
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	4 cut(s)	307, 369, 609, 650
FspBI	CTAG	3 cut(s)	219, 564, 963
GluI	GCNGC	4 cut(s)	307, 369, 609, 650
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	2 cut(s)	156, 674
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	274, 405, 490
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	4 cut(s)	95, 107, 172, 618
HpaII	CCGG	2 cut(s)	156, 674
HphI	GGTGA	1 cut(s)	721
Hpy166II	GTNNAC	1 cut(s)	820
Hpy188I	TCNGA	4 cut(s)	94, 171, 185, 513
Hpy188III	TCNNGA	6 cut(s)	359, 383, 461, 674, 748, 901
Hpy8I	GTNNAC	1 cut(s)	820
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	4 cut(s)	464, 591, 898, 985
HpyCH4III	ACNGT	3 cut(s)	83, 940, 976
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	6 cut(s)	74, 306, 378, 412, 486, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 281
HpyF3I	CTNAG	2 cut(s)	381, 738
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	274, 405, 490
Kpn2I	TCCGGA	1 cut(s)	673
KpnI	GGTACC	1 cut(s)	581
Kzo9I	GATC	3 cut(s)	592, 663, 676
LmnI	GCTCC	3 cut(s)	193, 405, 848
Lsp1109I	GCAGC	3 cut(s)	318, 620, 661
LweI	GCATC	3 cut(s)	355, 681, 907
MaeI	CTAG	3 cut(s)	219, 564, 963
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	104, 641
MalI	GATC	3 cut(s)	594, 665, 678
MboI	GATC	3 cut(s)	592, 663, 676
MboII	GAAGA	9 cut(s)	222, 314, 374, 502, 778, 926, 937, 945, 995
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	6 cut(s)	344, 681, 725, 787, 810, 999
MlyI	GAGTC	3 cut(s)	89, 101, 181
MmeI	TCCRAC	1 cut(s)	20
MnlI	CCTC	9 cut(s)	22, 161, 213, 235, 238, 366, 622, 681, 979
MroI	TCCGGA	1 cut(s)	673
MseI	TTAA	3 cut(s)	393, 428, 858
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	2 cut(s)	156, 674
MspR9I	CCNGG	2 cut(s)	251, 876
Mva1269I	GAATGC	2 cut(s)	268, 953
MvaI	CCWGG	2 cut(s)	251, 876
MwoI	GCNNNNNNNGC	2 cut(s)	272, 281
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	3 cut(s)	592, 663, 676
NheI	GCTAGC	1 cut(s)	962
NlaIII	CATG	3 cut(s)	274, 405, 490
NlaIV	GGNNCC	3 cut(s)	44, 579, 633
NmuCI	GTSAC	2 cut(s)	104, 641
PctI	GAATGC	2 cut(s)	268, 953
PfeI	GAWTC	1 cut(s)	618
PflFI	GACNNNGTC	1 cut(s)	501
PkrI	GCNGC	4 cut(s)	308, 370, 610, 651
PleI	GAGTC	3 cut(s)	89, 101, 180
PpsI	GAGTC	3 cut(s)	89, 101, 180
Psp124BI	GAGCTC	1 cut(s)	190
Psp6I	CCWGG	2 cut(s)	249, 874
PspGI	CCWGG	2 cut(s)	249, 874
PspN4I	GGNNCC	3 cut(s)	44, 579, 633
PstI	CTGCAG	1 cut(s)	651
PsyI	GACNNNGTC	1 cut(s)	501
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	2 cut(s)	423, 579
RsaNI	GTAC	2 cut(s)	422, 578
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	3 cut(s)	393, 428, 858
SatI	GCNGC	4 cut(s)	307, 369, 609, 650
Sau3AI	GATC	3 cut(s)	592, 663, 676
SchI	GAGTC	3 cut(s)	89, 101, 181
ScrFI	CCNGG	2 cut(s)	251, 876
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	3 cut(s)	355, 681, 907
SfcI	CTRYAG	1 cut(s)	647
SmlI	CTYRAG	1 cut(s)	746
SmoI	CTYRAG	1 cut(s)	746
Sse9I	AATT	6 cut(s)	344, 681, 725, 787, 810, 999
SsiI	CCGC	5 cut(s)	125, 148, 315, 369, 452
SspI	AATATT	2 cut(s)	482, 840
SspMI	CTAG	3 cut(s)	219, 564, 963
SstI	GAGCTC	1 cut(s)	190
StyD4I	CCNGG	2 cut(s)	249, 874
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	3 cut(s)	83, 940, 976
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	2 cut(s)	505, 706
TaqII	GACCGA	1 cut(s)	108
TasI	AATT	6 cut(s)	344, 681, 725, 787, 810, 999
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	618
Tru1I	TTAA	3 cut(s)	393, 428, 858
Tru9I	TTAA	3 cut(s)	393, 428, 858
TscAI	CASTG	1 cut(s)	332
TseFI	GTSAC	2 cut(s)	104, 641
TseI	GCWGC	3 cut(s)	306, 608, 649
Tsp45I	GTSAC	2 cut(s)	104, 641
TspDTI	ATGAA	3 cut(s)	390, 503, 995
TspGWI	ACGGA	3 cut(s)	92, 131, 167
TspRI	CASTG	1 cut(s)	332
Tth111I	GACNNNGTC	1 cut(s)	501
XapI	RAATTY	2 cut(s)	810, 999
XspI	CTAG	3 cut(s)	219, 564, 963
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.