Rw1G018950

zf-MYND-like zinc finger, mRNA-binding

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
41522267 .. 41527125
4859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G018950.1

Sequence Viewer

Length: 1173 bp
ATGGCCGACGTCGCCACCCTATCGTGTGCTCGTTGCAGCAAACCCGCCAATCTTCAGTGTCCCAAGTGTGTGGAATTGAAGCTTCCTCGTGAAGATGCCGCTTTCTGCACTCAGGATTGTTTTAAGGCTTCCTGGAGCTCGCATAAATCGGTACATTTAAAGGCCAAACAGTCCAATGGGACGGGAAATCCAGAGAACGAAGGCTGGGAATATTGCATGAAGAAAGGACAGGGTCGAACTCCGAAACTTCCTTATTTTGATTGGACAGGGACATTGAGACCATATCCTATATCTAGTAAGCGTGTGGTACCTGCTCATATTGATTTACCTGATTGGGCAGCTGATGGAATCCCAAAAGAGGAGCCCAGTAGTGACCTGCAGCGTGTTGTTGAGATCAAAACTCCGGATCAAATTGAGAGGATGCGAGAAACTTGTCGAATAGCAAGAGAGGTTTTGGATGCAGCTGCTCGTGTCATACGACCTGGTGTCACAACTGATGAAATTGATCGGGTGGTCCATGATGCTACTATTGCTGCGGGTGGATATCCATCTCCCCTCAATTATCATTTTTTCCCAAGTCTTGCTGCACGTAGGTCAGTCAATGAAGTAATTTGCCATGGGATTCCTGATGCCAGGAAATTAGAGGATGGTGATATCGTCAATGTTGATGTGACTGTGTATTACAAAGGTGTCCATGGTGATCTCAATGATACATACTTTGTGGGAAACGTTGATGAAGAGTCTCGACGGCTAGTCCAGTGTACTTATGAGTGCTTGGAAAAAGCAATATCCATTGTAAAACCTGGAGTTAGATTTCGTGAAGTTGGAGAAGTCATTAATCGCCATGCTACGATGGCGGGATTTTCTGTGGTGAAGTCATATTGTGGTCATGGTATAGGGGAGCTCTTTCATTGTGCACCAAATATTCCTCACTATGCAAGAAATAAAGCAGTTGGAGTGATGAAAGCTGGGCAAACTTTTACAATTGAACCAATGATCAATGCAGGAGTTTGGCGTGATCGAATGTGGCCTGACGGGTGGACTGCTGTTACCGCAGATGGAAAACGAAGTGCTCAATTTGAGCATACACTTCTGGTGACTGAGACTGGAGTTGAAGTTCTTACAGCACGGTTGCCTTCATCGCCAAAAGTGTACCCTTGGTTAGATGCTTGA

Protein Analysis

390

Amino Acids

43.34

Weight (kDa)

6.86

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C6H2 PF15801 10 - 53 2.9e-14 zf-MYND-like zinc finger, mRNA-binding
Peptidase_M24 PF00557 139 - 368 2.2e-52 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
Acc36I ACCTGC 2 cut(s) 319, 384
Acc65I GGTACC 1 cut(s) 307
AccB1I GGYRCC 1 cut(s) 307
AccIII TCCGGA 1 cut(s) 403
AciI CCGC 5 cut(s) 45, 99, 536, 857, 1053
AclI AACGTT 1 cut(s) 729
AclWI GGATC 1 cut(s) 414
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 38
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 4 cut(s) 153, 309, 763, 1154
AfiI CCNNNNNNNGG 1 cut(s) 358
AgsI TTSAA 3 cut(s) 79, 989, 1115
AhdI GACNNNNNGTC 2 cut(s) 485, 752
AjnI CCWGG 4 cut(s) 131, 481, 632, 802
AloI GAACNNNNNNTCC 2 cut(s) 1101, 1133
AluBI AGCT 6 cut(s) 82, 138, 341, 464, 904, 968
AluI AGCT 6 cut(s) 82, 138, 341, 464, 904, 968
Alw21I GWGCWC 5 cut(s) 31, 140, 906, 919, 1075
Alw26I GTCTC 3 cut(s) 271, 747, 1097
Alw44I GTGCAC 1 cut(s) 915
AlwI GGATC 1 cut(s) 414
Aor13HI TCCGGA 1 cut(s) 403
AoxI GGCC 3 cut(s) 3, 162, 1028
ApaLI GTGCAC 1 cut(s) 915
ApeKI GCWGC 7 cut(s) 36, 338, 379, 461, 464, 533, 584
AseI ATTAAT 1 cut(s) 837
Asp718I GGTACC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 514
AsuHPI GGTGA 4 cut(s) 662, 710, 883, 1108
AvaII GGWCC 1 cut(s) 514
BaeGI GKGCMC 1 cut(s) 919
BanI GGYRCC 1 cut(s) 307
BanII GRGCYC 3 cut(s) 140, 366, 906
BauI CACGAG 2 cut(s) 87, 468
Bbv12I GWGCWC 5 cut(s) 31, 140, 906, 919, 1075
BbvI GCAGC 7 cut(s) 48, 350, 391, 451, 473, 520, 571
BccI CCATC 5 cut(s) 338, 556, 641, 847, 1052
BceAI ACGGC 1 cut(s) 764
BciT130I CCWGG 4 cut(s) 133, 483, 634, 804
BclI TGATCA 1 cut(s) 996
BcoDI GTCTC 3 cut(s) 271, 747, 1097
BfaI CTAG 2 cut(s) 294, 752
BfmI CTRYAG 1 cut(s) 377
BfuAI ACCTGC 2 cut(s) 319, 384
BisI GCNGC 8 cut(s) 37, 99, 339, 380, 462, 465, 534, 585
BlsI GCNGC 8 cut(s) 38, 100, 340, 381, 463, 466, 535, 586
Bme1390I CCNGG 4 cut(s) 133, 483, 634, 804
Bme18I GGWCC 1 cut(s) 514
BmeRI GACNNNNNGTC 2 cut(s) 485, 752
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 2 cut(s) 309, 363
BmrFI CCNGG 4 cut(s) 133, 483, 634, 804
BmrI ACTGGG 1 cut(s) 360
BmsI GCATC 6 cut(s) 85, 411, 448, 511, 619, 1156
BmuI ACTGGG 1 cut(s) 360
BpmI CTGGAG 3 cut(s) 154, 825, 1128
BsaAI YACGTR 1 cut(s) 590
BsaBI GATNNNNATC 1 cut(s) 547
BsaHI GRCGYC 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 271
BsaJI CCNNGG 3 cut(s) 616, 694, 1157
BsaWI WCCGGW 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 1101, 1131
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse1I ACTGG 3 cut(s) 366, 757, 1111
Bse8I GATNNNNATC 1 cut(s) 547
BseAI TCCGGA 1 cut(s) 403
BseBI CCWGG 4 cut(s) 133, 483, 634, 804
BseDI CCNNGG 3 cut(s) 616, 694, 1157
BseGI GGATG 3 cut(s) 426, 463, 652
BseJI GATNNNNATC 1 cut(s) 547
BseLI CCNNNNNNNGG 1 cut(s) 358
BseMII CTCAG 2 cut(s) 125, 1092
BseNI ACTGG 3 cut(s) 366, 757, 1111
BseRI GAGGAG 1 cut(s) 374
BseSI GKGCMC 1 cut(s) 919
BseXI GCAGC 7 cut(s) 48, 350, 391, 451, 473, 520, 571
BseYI CCCAGC 2 cut(s) 204, 968
BsgI GTGCAG 2 cut(s) 91, 570
BshFI GGCC 3 cut(s) 5, 164, 1030
BshNI GGYRCC 1 cut(s) 307
BsiHKAI GWGCWC 5 cut(s) 31, 140, 906, 919, 1075
BsiSI CCGG 1 cut(s) 404
BslFI GGGAC 3 cut(s) 45, 193, 283
BslI CCNNNNNNNGG 1 cut(s) 358
BsmAI GTCTC 3 cut(s) 271, 747, 1097
BsmFI GGGAC 3 cut(s) 45, 193, 283
BsnI GGCC 3 cut(s) 5, 164, 1030
Bso31I GGTCTC 1 cut(s) 271
Bsp1286I GDGCHC 6 cut(s) 31, 140, 366, 906, 919, 1075
Bsp13I TCCGGA 1 cut(s) 403
Bsp143I GATC 6 cut(s) 393, 406, 505, 700, 996, 1018
Bsp19I CCATGG 2 cut(s) 616, 694
BspACI CCGC 5 cut(s) 45, 99, 536, 857, 1053
BspANI GGCC 3 cut(s) 5, 164, 1030
BspCNI CTCAG 2 cut(s) 124, 1093
BspEI TCCGGA 1 cut(s) 403
BspLI GGNNCC 2 cut(s) 309, 363
BspMAI CTGCAG 1 cut(s) 381
BspMI ACCTGC 2 cut(s) 319, 384
BspPI GGATC 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 307
BspTNI GGTCTC 1 cut(s) 271
BsrI ACTGG 3 cut(s) 366, 757, 1111
BssECI CCNNGG 3 cut(s) 616, 694, 1157
BssMI GATC 6 cut(s) 393, 406, 505, 700, 996, 1018
BssNI GRCGYC 1 cut(s) 9
BssSI CACGAG 2 cut(s) 87, 468
BssT1I CCWWGG 3 cut(s) 616, 694, 1157
Bst2BI CACGAG 2 cut(s) 87, 468
Bst2UI CCWGG 4 cut(s) 133, 483, 634, 804
Bst4CI ACNGT 3 cut(s) 171, 676, 1131
Bst6I CTCTTC 1 cut(s) 732
BstACI GRCGYC 1 cut(s) 9
BstBAI YACGTR 1 cut(s) 590
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 2 cut(s) 111, 1101
BstDSI CCRYGG 2 cut(s) 616, 694
BstF5I GGATG 3 cut(s) 426, 463, 652
BstKTI GATC 6 cut(s) 396, 409, 508, 703, 999, 1021
BstMAI GTCTC 3 cut(s) 271, 747, 1097
BstMBI GATC 6 cut(s) 393, 406, 505, 700, 996, 1018
BstMWI GCNNNNNNNGC 5 cut(s) 11, 530, 854, 1052, 1141
BstNI CCWGG 4 cut(s) 133, 483, 634, 804
BstSCI CCNGG 4 cut(s) 131, 481, 632, 802
BstSFI CTRYAG 1 cut(s) 377
BstSLI GKGCMC 1 cut(s) 919
BstV1I GCAGC 7 cut(s) 48, 350, 391, 451, 473, 520, 571
BstXI CCANNNNNNTGG 1 cut(s) 70
BsuRI GGCC 3 cut(s) 5, 164, 1030
BtgI CCRYGG 2 cut(s) 616, 694
BtgZI GCGATG 1 cut(s) 1125
BtsCI GGATG 3 cut(s) 426, 463, 652
BtsIMutI CAGTG 2 cut(s) 62, 764
BveI ACCTGC 2 cut(s) 319, 384
Cac8I GCNNGC 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 514
CsiI ACCWGGT 1 cut(s) 481
Csp6I GTAC 4 cut(s) 152, 308, 762, 1153
CviAII CATG 6 cut(s) 217, 518, 617, 695, 845, 890
CviQI GTAC 4 cut(s) 152, 308, 762, 1153
DdeI CTNAG 2 cut(s) 111, 1101
DpnI GATC 6 cut(s) 395, 408, 507, 702, 998, 1020
DpnII GATC 6 cut(s) 393, 406, 505, 700, 996, 1018
DraI TTTAAA 1 cut(s) 159
DriI GACNNNNNGTC 2 cut(s) 485, 752
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 732
Eam1105I GACNNNNNGTC 2 cut(s) 485, 752
EarI CTCTTC 1 cut(s) 732
Ecl136II GAGCTC 2 cut(s) 138, 904
Eco130I CCWWGG 3 cut(s) 616, 694, 1157
Eco24I GRGCYC 3 cut(s) 140, 366, 906
Eco31I GGTCTC 1 cut(s) 271
Eco32I GATATC 2 cut(s) 545, 655
Eco47I GGWCC 1 cut(s) 514
Eco53kI GAGCTC 2 cut(s) 138, 904
Eco57I CTGAAG 1 cut(s) 38
EcoICRI GAGCTC 2 cut(s) 138, 904
EcoRII CCWGG 4 cut(s) 131, 481, 632, 802
EcoRV GATATC 2 cut(s) 545, 655
EcoT14I CCWWGG 3 cut(s) 616, 694, 1157
EcoT38I GRGCYC 3 cut(s) 140, 366, 906
ErhI CCWWGG 3 cut(s) 616, 694, 1157
FaeI CATG 6 cut(s) 220, 521, 620, 698, 848, 893
FaqI GGGAC 3 cut(s) 45, 193, 283
FatI CATG 6 cut(s) 216, 517, 616, 694, 844, 889
FauI CCCGC 3 cut(s) 52, 529, 850
FbaI TGATCA 1 cut(s) 996
Fnu4HI GCNGC 8 cut(s) 37, 99, 339, 380, 462, 465, 534, 585
FokI GGATG 3 cut(s) 433, 470, 659
FriOI GRGCYC 3 cut(s) 140, 366, 906
Fsp4HI GCNGC 8 cut(s) 37, 99, 339, 380, 462, 465, 534, 585
FspBI CTAG 2 cut(s) 294, 752
GluI GCNGC 8 cut(s) 37, 99, 339, 380, 462, 465, 534, 585
GsaI CCCAGC 2 cut(s) 208, 972
GsuI CTGGAG 3 cut(s) 154, 825, 1128
HaeIII GGCC 3 cut(s) 5, 164, 1030
HapII CCGG 1 cut(s) 404
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 6 cut(s) 220, 521, 620, 698, 848, 893
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 3 cut(s) 348, 622, 740
HpaII CCGG 1 cut(s) 404
HphI GGTGA 4 cut(s) 662, 710, 883, 1108
Hpy166II GTNNAC 4 cut(s) 762, 917, 1041, 1153
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 7 cut(s) 89, 113, 191, 404, 626, 744, 818
Hpy8I GTNNAC 4 cut(s) 762, 917, 1041, 1153
Hpy99I CGWCG 3 cut(s) 11, 14, 750
HpyAV CCTTC 2 cut(s) 194, 1146
HpyCH4III ACNGT 3 cut(s) 171, 676, 1131
HpyCH4IV ACGT 3 cut(s) 9, 589, 729
HpyCH4V TGCA 9 cut(s) 36, 108, 216, 379, 461, 587, 917, 938, 1004
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 530, 854, 1052, 1141
HpyF3I CTNAG 2 cut(s) 111, 1101
HpySE526I ACGT 3 cut(s) 9, 589, 729
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 6 cut(s) 220, 521, 620, 698, 848, 893
Kpn2I TCCGGA 1 cut(s) 403
KpnI GGTACC 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 996
Kzo9I GATC 6 cut(s) 393, 406, 505, 700, 996, 1018
LmnI GCTCC 3 cut(s) 135, 361, 901
Lsp1109I GCAGC 7 cut(s) 48, 350, 391, 451, 473, 520, 571
LweI GCATC 6 cut(s) 85, 411, 448, 511, 619, 1156
MabI ACCWGGT 1 cut(s) 481
MaeI CTAG 2 cut(s) 294, 752
MaeII ACGT 3 cut(s) 9, 589, 729
MaeIII GTNAC 5 cut(s) 371, 487, 670, 1048, 1096
MalI GATC 6 cut(s) 395, 408, 507, 702, 998, 1020
MboI GATC 6 cut(s) 393, 406, 505, 700, 996, 1018
MboII GAAGA 4 cut(s) 44, 104, 232, 749
MfeI CAATTG 1 cut(s) 984
MhlI GDGCHC 6 cut(s) 31, 140, 366, 906, 919, 1075
MluCI AATT 8 cut(s) 74, 411, 501, 559, 609, 638, 984, 1076
MlyI GAGTC 1 cut(s) 749
MmeI TCCRAC 2 cut(s) 805, 934
MnlI CCTC 7 cut(s) 96, 352, 411, 442, 566, 637, 939
MroI TCCGGA 1 cut(s) 403
MseI TTAA 3 cut(s) 123, 158, 837
MspA1I CMGCKG 2 cut(s) 341, 464
MspI CCGG 1 cut(s) 404
MspR9I CCNGG 4 cut(s) 133, 483, 634, 804
MunI CAATTG 1 cut(s) 984
MvaI CCWGG 4 cut(s) 133, 483, 634, 804
MwoI GCNNNNNNNGC 5 cut(s) 11, 530, 854, 1052, 1141
NcoI CCATGG 2 cut(s) 616, 694
NdeII GATC 6 cut(s) 393, 406, 505, 700, 996, 1018
NlaIII CATG 6 cut(s) 220, 521, 620, 698, 848, 893
NlaIV GGNNCC 2 cut(s) 309, 363
NmuCI GTSAC 4 cut(s) 371, 487, 670, 1096
PcsI WCGNNNNNNNCGW 1 cut(s) 475
PfeI GAWTC 2 cut(s) 348, 622
PflFI GACNNNGTC 1 cut(s) 231
PfoI TCCNGGA 1 cut(s) 131
PkrI GCNGC 8 cut(s) 38, 100, 340, 381, 463, 466, 535, 586
PleI GAGTC 1 cut(s) 748
PpsI GAGTC 1 cut(s) 748
Ppu21I YACGTR 1 cut(s) 590
PshBI ATTAAT 1 cut(s) 837
Psp124BI GAGCTC 2 cut(s) 140, 906
Psp1406I AACGTT 1 cut(s) 729
Psp6I CCWGG 4 cut(s) 131, 481, 632, 802
PspFI CCCAGC 2 cut(s) 204, 968
PspGI CCWGG 4 cut(s) 131, 481, 632, 802
PspN4I GGNNCC 2 cut(s) 309, 363
PspPI GGNCC 1 cut(s) 514
PstI CTGCAG 1 cut(s) 381
PsyI GACNNNGTC 1 cut(s) 231
PvuII CAGCTG 2 cut(s) 341, 464
RsaI GTAC 4 cut(s) 153, 309, 763, 1154
RsaNI GTAC 4 cut(s) 152, 308, 762, 1153
SacI GAGCTC 2 cut(s) 140, 906
SaqAI TTAA 3 cut(s) 123, 158, 837
SatI GCNGC 8 cut(s) 37, 99, 339, 380, 462, 465, 534, 585
Sau3AI GATC 6 cut(s) 393, 406, 505, 700, 996, 1018
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 1 cut(s) 749
ScrFI CCNGG 4 cut(s) 133, 483, 634, 804
SduI GDGCHC 6 cut(s) 31, 140, 366, 906, 919, 1075
SexAI ACCWGGT 1 cut(s) 481
SfaNI GCATC 6 cut(s) 85, 411, 448, 511, 619, 1156
SfcI CTRYAG 1 cut(s) 377
SinI GGWCC 1 cut(s) 514
Sse9I AATT 8 cut(s) 74, 411, 501, 559, 609, 638, 984, 1076
SsiI CCGC 5 cut(s) 45, 99, 536, 857, 1053
SspI AATATT 2 cut(s) 212, 925
SspMI CTAG 2 cut(s) 294, 752
SstI GAGCTC 2 cut(s) 140, 906
StyD4I CCNGG 4 cut(s) 131, 481, 632, 802
StyI CCWWGG 3 cut(s) 616, 694, 1157
TaaI ACNGT 3 cut(s) 171, 676, 1131
TaiI ACGT 3 cut(s) 12, 592, 732
TaqI TCGA 4 cut(s) 235, 436, 745, 1021
TasI AATT 8 cut(s) 74, 411, 501, 559, 609, 638, 984, 1076
TatI WGTACW 1 cut(s) 761
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 2 cut(s) 348, 622
Tru1I TTAA 3 cut(s) 123, 158, 837
Tru9I TTAA 3 cut(s) 123, 158, 837
TscAI CASTG 2 cut(s) 62, 764
TseFI GTSAC 4 cut(s) 371, 487, 670, 1096
TseI GCWGC 7 cut(s) 36, 338, 379, 461, 464, 533, 584
Tsp45I GTSAC 4 cut(s) 371, 487, 670, 1096
TspDTI ATGAA 7 cut(s) 233, 513, 618, 750, 899, 977, 1128
TspRI CASTG 2 cut(s) 62, 764
Tth111I GACNNNGTC 1 cut(s) 231
VneI GTGCAC 1 cut(s) 915
VpaK11BI GGWCC 1 cut(s) 514
VspI ATTAAT 1 cut(s) 837
XspI CTAG 2 cut(s) 294, 752
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.