Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001593.1

Orthogroup ID

OG0003129

Physical Location & Seq

Genomic Coordinates Reverse (-)

49517 .. 49929

Gene Structure 413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001593.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

atggcgggattttctgtggtgaaatcatattgtggtcatggtataggggagctctttcattgtgcaccaaatattcctcactatgcaagaaataaagcagttggagtgatgaaagctggacaaacttttacgattgaaccaatgatcaatgcaggtatttttgaaaagttgtttatgagcatattgaattgttttttgctggccacaccttattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24 zf-C6H2

Protein Analysis

71

Amino Acids

7.77

Weight (kDa)

8.56

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45240 AT2G45240
fragaria_vesca	FvH4_7g11350 FvH4_7g11370
malus_domestica	MD02G1206000.v1.1 MD07G1118400.v1.1 MD07G1118600.v1.1
prunus_persica	Prupe.2G141300_v2.0.a1
pyrus_communis	pycom02g16990 pycom07g10610
rosa_chinensis	RchiOBHm_Chr1g0349561 RchiOBHm_Chr1g0349651 RchiOBHm_Chr4g0403521 RchiOBHm_Chr7g0223151
rosa_laevigata	RLG00000028538 RLG00000028542
rosa_multiflora	Rmu_sc0001593.1_g000008 Rmu_sc0002495.1_g000024 Rmu_sc0002495.1_g000038 Rmu_sc0006074.1_g000011 Rmu_sc0012293.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305410 Rroxscaffold_4G00305430
rosa_rugosa	Rorug01G0204500 Rorug05G0164500
rosa_samantha	Rh1AG221900 Rh1AG222400 Rh1BG188000 Rh1BG188300 Rh1CG206700 Rh1CG206800 Rh1CG207100 Rh1DG217400 Rh1DG217600
rosa_wichuraiana	Rw1G018860 Rw1G018910 Rw1G018950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	143
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	201
AgsI	TTSAA	3 cut(s)	137, 164, 187
AluBI	AGCT	2 cut(s)	52, 116
AluI	AGCT	2 cut(s)	52, 116
Alw21I	GWGCWC	2 cut(s)	54, 67
Alw44I	GTGCAC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	201
ApaLI	GTGCAC	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	31
BaeGI	GKGCMC	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	54, 67
BclI	TGATCA	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	67
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	2 cut(s)	54, 67
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	54, 67
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	203
BspMI	ACCTGC	1 cut(s)	143
BssMI	GATC	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	201
BstKTI	GATC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	203
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	201
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	3 cut(s)	52, 116, 203
CviKI_1	RGCY	3 cut(s)	52, 116, 203
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
EaeI	YGGCCR	1 cut(s)	201
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	54
FaeI	CATG	1 cut(s)	41
FaiI	YATR	6 cut(s)	28, 39, 44, 84, 176, 182
FatI	CATG	1 cut(s)	37
FbaI	TGATCA	1 cut(s)	144
FriOI	GRGCYC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	203
Hin1II	CATG	1 cut(s)	41
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	65
HpyCH4V	TGCA	3 cut(s)	65, 86, 152
Hsp92II	CATG	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	3 cut(s)	102, 138, 185
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MhlI	GDGCHC	2 cut(s)	54, 67
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	1 cut(s)	187
MluNI	TGGCCA	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	1 cut(s)	87
Mox20I	TGGCCA	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	1 cut(s)	214
Msp20I	TGGCCA	1 cut(s)	203
NdeII	GATC	1 cut(s)	144
NlaIII	CATG	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	214
Sau3AI	GATC	1 cut(s)	144
SduI	GDGCHC	2 cut(s)	54, 67
SetI	ASST	4 cut(s)	54, 118, 157, 211
SgeI	CNNG	6 cut(s)	18, 50, 99, 129, 165, 212
Sse9I	AATT	1 cut(s)	187
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	1 cut(s)	73
SstI	GAGCTC	1 cut(s)	54
TasI	AATT	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	214
Tru9I	TTAA	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	47, 125
VneI	GTGCAC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.