Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003129

Physical Location & Seq

Genomic Coordinates Reverse (-)

14310741 .. 14315550

Gene Structure 4810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g16990.16

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCAGGTGGTTCAGGTGTCGCCGAACCAGCTAGTTTGTCCTGTGCCAGTTGCGGCAAGCCTGCCCATCTTCAGTGTCCAAAATGTGTGCAATTAAAGCTCCCTCGTGAAGCTGCTGCTTTCTGCACTCAGGAGTGTTTTAAAGCTTCTTGGAACTCTCATAAACCCGTGCATCTAAAAGCCAAGTCGTCTGAATCTGGGACAGATACTCCAGATAATGAAGGCTGGCTATATTGCTTGAAGAAAGGACAAACTCGAACAGCTAAGCTTCCCTATTTTGATTGGACTGGGGCGCTGAGGCCGTATCCTATATCTAGTAAGCGTATAGTACCTGCTCACATTGATCTACCTGACTGGGCAGCTGATGGGATTCCAAAAGTTGAGCCCAATAGTGATCTACAGCATGTTGTCGAGATCAAGACAGTGGATCAAATTGAGAGAATGCGAGAAACTTGTCGAATTGCGAGGGAGGTTTTGGATGCAGCTGCTTCTGTAATACGGCCTGGTATCACAACGGATGAAATTGATCGGGTGGTCCATGAGGCTACTATAGCTGCTGGTGGATATCCATCTCCGCTAAATTATAATTTTTTCCCCAAGTCTTGCTGCACGTCAGTCAATGAAGTAATTTGCCATGGGATTCCTGATGCCAGGAAATTAGAGGATGGTGATATCGTCAATGTTGATGTGACTGTGTTTTACAAAGGCGTCCATGGTGATCTAAATGAAACGTACTTTGTGGGAAATGTTGATGAAGAGTCTCAACGGCTGGTCAAATCTACTTACGAGTGCTTGGAGAAAGCAATTTCCATTGTAAAACCTGGAATGCGATTTCGTGAAGTTGGTGAAGTCATTAATCGCCATGCAACTATGTCGGGGTTCTCTGTGGTGAAATCATATTGTGGTCATGGTATTGGAGAGCTTTTTCATTGTGCGCCAAATATTCCCCATTACGGAAGAAATAAGGCAGTTGGTGTAATGAAAGCTGGACAGACCTTTTCAATTGAACCCATGATAAATGCAGGGGTTTGGCGTGATCGTATGTGGCCCGATGCATGGACAGCTGTTACATCAGATGGAAAGCGCAGTGCACAGTTTGAGCACACACTTCTGGTGACAGAGACTGGAGTTGAAGTTCTTACAGCTCGGTTGCCTTCATCACCCAAAGTGTTCCCTTGGTTAAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24 zf-C6H2

Protein Analysis

397

Amino Acids

43.56

Weight (kDa)

6.67

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45240 AT2G45240
fragaria_vesca	FvH4_7g11350 FvH4_7g11370
malus_domestica	MD02G1206000.v1.1 MD07G1118400.v1.1 MD07G1118600.v1.1
prunus_persica	Prupe.2G141300_v2.0.a1
pyrus_communis	pycom02g16990 pycom07g10610
rosa_chinensis	RchiOBHm_Chr1g0349561 RchiOBHm_Chr1g0349651 RchiOBHm_Chr4g0403521 RchiOBHm_Chr7g0223151
rosa_laevigata	RLG00000028538 RLG00000028542
rosa_multiflora	Rmu_sc0001593.1_g000008 Rmu_sc0002495.1_g000024 Rmu_sc0002495.1_g000038 Rmu_sc0006074.1_g000011 Rmu_sc0012293.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305410 Rroxscaffold_4G00305430
rosa_rugosa	Rorug01G0204500 Rorug05G0164500
rosa_samantha	Rh1AG221900 Rh1AG222400 Rh1BG188000 Rh1BG188300 Rh1CG206700 Rh1CG206800 Rh1CG207100 Rh1DG217400 Rh1DG217600
rosa_wichuraiana	Rw1G018860 Rw1G018910 Rw1G018950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	585
Acc36I	ACCTGC	1 cut(s)	340
AciI	CCGC	2 cut(s)	54, 575
AclWI	GGATC	1 cut(s)	435
AcuI	CTGAAG	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	708
AfaI	GTAC	2 cut(s)	330, 734
AfiI	CCNNNNNNNGG	2 cut(s)	953, 1056
AgsI	TTSAA	4 cut(s)	241, 1002, 1007, 1133
AjiI	CACGTC	1 cut(s)	612
AjnI	CCWGG	3 cut(s)	502, 650, 820
AloI	GAACNNNNNNTCC	2 cut(s)	1119, 1151
Alw21I	GWGCWC	2 cut(s)	1093, 1104
Alw26I	GTCTC	2 cut(s)	765, 1115
Alw44I	GTGCAC	1 cut(s)	1089
AlwI	GGATC	1 cut(s)	435
AlwNI	CAGNNNCTG	1 cut(s)	1124
AoxI	GGCC	3 cut(s)	299, 500, 1046
ApaLI	GTGCAC	1 cut(s)	1089
ApeKI	GCWGC	7 cut(s)	113, 116, 359, 482, 485, 554, 606
AseI	ATTAAT	1 cut(s)	855
AspLEI	GCGC	3 cut(s)	295, 937, 1086
AspS9I	GGNCC	2 cut(s)	535, 1047
AsuHPI	GGTGA	6 cut(s)	680, 728, 857, 901, 1126, 1152
AvaII	GGWCC	1 cut(s)	535
BaeGI	GKGCMC	1 cut(s)	1093
BanII	GRGCYC	1 cut(s)	387
BauI	CACGAG	1 cut(s)	105
Bbv12I	GWGCWC	2 cut(s)	1093, 1104
BbvCI	CCTCAGC	1 cut(s)	296
BbvI	GCAGC	7 cut(s)	100, 103, 371, 472, 494, 541, 593
BccI	CCATC	5 cut(s)	75, 359, 577, 659, 1070
BceAI	ACGGC	3 cut(s)	286, 515, 782
BcgI	CGANNNNNNTGC	2 cut(s)	855, 889
BciT130I	CCWGG	3 cut(s)	504, 652, 822
BciVI	GTATCC	1 cut(s)	315
BcoDI	GTCTC	2 cut(s)	765, 1115
BfaI	CTAG	2 cut(s)	33, 315
BfmI	CTRYAG	2 cut(s)	398, 549
BfoI	RGCGCY	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	340
BfuI	GTATCC	1 cut(s)	315
BisI	GCNGC	8 cut(s)	55, 114, 117, 360, 483, 486, 555, 607
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	8 cut(s)	56, 115, 118, 361, 484, 487, 556, 608
Bme1390I	CCNGG	3 cut(s)	504, 652, 822
Bme18I	GGWCC	1 cut(s)	535
BmgBI	CACGTC	1 cut(s)	612
BmgT120I	GGNCC	2 cut(s)	535, 1047
BmrFI	CCNGG	3 cut(s)	504, 652, 822
BmrI	ACTGGG	2 cut(s)	297, 364
BmsI	GCATC	4 cut(s)	181, 469, 637, 1042
BmuI	ACTGGG	2 cut(s)	297, 364
BpmI	CTGGAG	2 cut(s)	195, 1146
Bpu10I	CCTNAGC	1 cut(s)	296
Bpu1102I	GCTNAGC	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	568
BsaHI	GRCGYC	1 cut(s)	708
BsaJI	CCNNGG	3 cut(s)	634, 712, 1175
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 1119, 1149
Bsc4I	CCNNNNNNNGG	2 cut(s)	953, 1056
Bse1I	ACTGG	4 cut(s)	48, 292, 359, 1129
Bse8I	GATNNNNATC	1 cut(s)	568
BseBI	CCWGG	3 cut(s)	504, 652, 822
BseDI	CCNNGG	3 cut(s)	634, 712, 1175
BseGI	GGATG	3 cut(s)	484, 523, 670
BseJI	GATNNNNATC	1 cut(s)	568
BseLI	CCNNNNNNNGG	2 cut(s)	953, 1056
BseMII	CTCAG	2 cut(s)	143, 287
BseNI	ACTGG	4 cut(s)	48, 292, 359, 1129
BseSI	GKGCMC	1 cut(s)	1093
BseXI	GCAGC	7 cut(s)	100, 103, 371, 472, 494, 541, 593
BsgI	GTGCAG	2 cut(s)	109, 592
BshFI	GGCC	3 cut(s)	301, 502, 1048
BsiHKAI	GWGCWC	2 cut(s)	1093, 1104
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	2 cut(s)	953, 1056
BsmAI	GTCTC	2 cut(s)	765, 1115
BsmFI	GGGAC	1 cut(s)	214
BsmI	GAATGC	2 cut(s)	447, 831
BsnI	GGCC	3 cut(s)	301, 502, 1048
Bsp1286I	GDGCHC	3 cut(s)	387, 1093, 1104
Bsp143I	GATC	7 cut(s)	343, 394, 414, 427, 526, 718, 1036
Bsp1720I	GCTNAGC	1 cut(s)	264
Bsp19I	CCATGG	2 cut(s)	634, 712
BspACI	CCGC	2 cut(s)	54, 575
BspANI	GGCC	3 cut(s)	301, 502, 1048
BspCNI	CTCAG	2 cut(s)	142, 288
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	1 cut(s)	435
BsrI	ACTGG	4 cut(s)	48, 292, 359, 1129
BssECI	CCNNGG	3 cut(s)	634, 712, 1175
BssMI	GATC	7 cut(s)	343, 394, 414, 427, 526, 718, 1036
BssNI	GRCGYC	1 cut(s)	708
BssSI	CACGAG	1 cut(s)	105
BssT1I	CCWWGG	3 cut(s)	634, 712, 1175
Bst2BI	CACGAG	1 cut(s)	105
Bst2UI	CCWGG	3 cut(s)	504, 652, 822
Bst4CI	ACNGT	3 cut(s)	424, 694, 1095
Bst6I	CTCTTC	1 cut(s)	750
BstACI	GRCGYC	1 cut(s)	708
BstC8I	GCNNGC	3 cut(s)	59, 63, 227
BstDEI	CTNAG	3 cut(s)	129, 264, 296
BstDSI	CCRYGG	2 cut(s)	634, 712
BstF5I	GGATG	3 cut(s)	484, 523, 670
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	3 cut(s)	295, 937, 1086
BstKTI	GATC	7 cut(s)	346, 397, 417, 430, 529, 721, 1039
BstMAI	GTCTC	2 cut(s)	765, 1115
BstMBI	GATC	7 cut(s)	343, 394, 414, 427, 526, 718, 1036
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 97, 551, 1061
BstNI	CCWGG	3 cut(s)	504, 652, 822
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	3 cut(s)	502, 650, 820
BstSFI	CTRYAG	2 cut(s)	398, 549
BstSLI	GKGCMC	1 cut(s)	1093
BstV1I	GCAGC	7 cut(s)	100, 103, 371, 472, 494, 541, 593
BsuI	GTATCC	1 cut(s)	315
BsuRI	GGCC	3 cut(s)	301, 502, 1048
BtgI	CCRYGG	2 cut(s)	634, 712
BtrI	CACGTC	1 cut(s)	612
BtsCI	GGATG	3 cut(s)	484, 523, 670
BtsI	GCAGTG	1 cut(s)	1093
BtsIMutI	CAGTG	3 cut(s)	80, 429, 1093
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	3 cut(s)	59, 63, 227
CaiI	CAGNNNCTG	1 cut(s)	1124
CfoI	GCGC	3 cut(s)	295, 937, 1086
Cfr13I	GGNCC	2 cut(s)	535, 1047
CseI	GACGC	1 cut(s)	697
Csp6I	GTAC	2 cut(s)	329, 733
CviAII	CATG	8 cut(s)	404, 539, 635, 713, 863, 908, 1012, 1056
CviQI	GTAC	2 cut(s)	329, 733
DdeI	CTNAG	3 cut(s)	129, 264, 296
DpnI	GATC	7 cut(s)	345, 396, 416, 429, 528, 720, 1038
DpnII	GATC	7 cut(s)	343, 394, 414, 427, 526, 718, 1036
DraI	TTTAAA	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	750
EarI	CTCTTC	1 cut(s)	750
Eco130I	CCWWGG	3 cut(s)	634, 712, 1175
Eco24I	GRGCYC	1 cut(s)	387
Eco32I	GATATC	2 cut(s)	566, 673
Eco47I	GGWCC	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	56
EcoRII	CCWGG	3 cut(s)	502, 650, 820
EcoRV	GATATC	2 cut(s)	566, 673
EcoT14I	CCWWGG	3 cut(s)	634, 712, 1175
EcoT22I	ATGCAT	1 cut(s)	1057
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	3 cut(s)	634, 712, 1175
FaeI	CATG	8 cut(s)	407, 542, 638, 716, 866, 911, 1015, 1059
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	8 cut(s)	403, 538, 634, 712, 862, 907, 1011, 1055
Fnu4HI	GCNGC	8 cut(s)	55, 114, 117, 360, 483, 486, 555, 607
FokI	GGATG	3 cut(s)	491, 530, 677
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	8 cut(s)	55, 114, 117, 360, 483, 486, 555, 607
FspBI	CTAG	2 cut(s)	33, 315
GlaI	GCGC	3 cut(s)	294, 936, 1085
GluI	GCNGC	8 cut(s)	55, 114, 117, 360, 483, 486, 555, 607
GsuI	CTGGAG	2 cut(s)	195, 1146
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	3 cut(s)	301, 502, 1048
HgaI	GACGC	1 cut(s)	697
HhaI	GCGC	3 cut(s)	295, 937, 1086
Hin1I	GRCGYC	1 cut(s)	708
Hin1II	CATG	8 cut(s)	407, 542, 638, 716, 866, 911, 1015, 1059
Hin6I	GCGC	3 cut(s)	293, 935, 1084
HinP1I	GCGC	3 cut(s)	293, 935, 1084
HindIII	AAGCTT	2 cut(s)	144, 266
HinfI	GANTC	4 cut(s)	194, 370, 640, 758
HphI	GGTGA	6 cut(s)	680, 728, 857, 901, 1126, 1152
Hpy166II	GTNNAC	1 cut(s)	1091
Hpy188I	TCNGA	2 cut(s)	193, 1075
Hpy188III	TCNNGA	7 cut(s)	107, 131, 212, 412, 418, 644, 836
Hpy8I	GTNNAC	1 cut(s)	1091
HpyAV	CCTTC	2 cut(s)	215, 1164
HpyCH4III	ACNGT	3 cut(s)	424, 694, 1095
HpyCH4IV	ACGT	2 cut(s)	611, 731
HpyCH4V	TGCA	9 cut(s)	91, 126, 172, 482, 609, 866, 1022, 1055, 1091
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 97, 551, 1061
HpyF3I	CTNAG	3 cut(s)	129, 264, 296
HpySE526I	ACGT	2 cut(s)	611, 731
Hsp92I	GRCGYC	1 cut(s)	708
Hsp92II	CATG	8 cut(s)	407, 542, 638, 716, 866, 911, 1015, 1059
HspAI	GCGC	3 cut(s)	293, 935, 1084
Kzo9I	GATC	7 cut(s)	343, 394, 414, 427, 526, 718, 1036
LmnI	GCTCC	1 cut(s)	105
Lsp1109I	GCAGC	7 cut(s)	100, 103, 371, 472, 494, 541, 593
LweI	GCATC	4 cut(s)	181, 469, 637, 1042
MaeI	CTAG	2 cut(s)	33, 315
MaeII	ACGT	2 cut(s)	611, 731
MaeIII	GTNAC	3 cut(s)	688, 1066, 1114
MalI	GATC	7 cut(s)	345, 396, 416, 429, 528, 720, 1038
MboI	GATC	7 cut(s)	343, 394, 414, 427, 526, 718, 1036
MboII	GAAGA	4 cut(s)	62, 253, 767, 969
MfeI	CAATTG	1 cut(s)	1002
MhlI	GDGCHC	3 cut(s)	387, 1093, 1104
MlyI	GAGTC	1 cut(s)	767
MnlI	CCTC	6 cut(s)	114, 291, 459, 463, 535, 655
Mph1103I	ATGCAT	1 cut(s)	1057
MseI	TTAA	5 cut(s)	95, 141, 855, 1181, 1189
MspA1I	CMGCKG	3 cut(s)	362, 485, 1064
MspR9I	CCNGG	3 cut(s)	504, 652, 822
MunI	CAATTG	1 cut(s)	1002
Mva1269I	GAATGC	2 cut(s)	447, 831
MvaI	CCWGG	3 cut(s)	504, 652, 822
MwoI	GCNNNNNNNGC	4 cut(s)	29, 97, 551, 1061
NcoI	CCATGG	2 cut(s)	634, 712
NdeII	GATC	7 cut(s)	343, 394, 414, 427, 526, 718, 1036
NlaIII	CATG	8 cut(s)	407, 542, 638, 716, 866, 911, 1015, 1059
NmuCI	GTSAC	2 cut(s)	688, 1114
NsiI	ATGCAT	1 cut(s)	1057
NspI	RCATGY	1 cut(s)	407
PctI	GAATGC	2 cut(s)	447, 831
PfeI	GAWTC	3 cut(s)	194, 370, 640
PkrI	GCNGC	8 cut(s)	56, 115, 118, 361, 484, 487, 556, 608
PleI	GAGTC	1 cut(s)	766
PpsI	GAGTC	1 cut(s)	766
PshBI	ATTAAT	1 cut(s)	855
PsiI	TTATAA	1 cut(s)	585
Psp6I	CCWGG	3 cut(s)	502, 650, 820
PspGI	CCWGG	3 cut(s)	502, 650, 820
PspPI	GGNCC	2 cut(s)	535, 1047
PstNI	CAGNNNCTG	1 cut(s)	1124
PvuII	CAGCTG	3 cut(s)	362, 485, 1064
RsaI	GTAC	2 cut(s)	330, 734
RsaNI	GTAC	2 cut(s)	329, 733
SaqAI	TTAA	5 cut(s)	95, 141, 855, 1181, 1189
SatI	GCNGC	8 cut(s)	55, 114, 117, 360, 483, 486, 555, 607
Sau3AI	GATC	7 cut(s)	343, 394, 414, 427, 526, 718, 1036
Sau96I	GGNCC	2 cut(s)	535, 1047
SchI	GAGTC	1 cut(s)	767
ScrFI	CCNGG	3 cut(s)	504, 652, 822
SduI	GDGCHC	3 cut(s)	387, 1093, 1104
SfaNI	GCATC	4 cut(s)	181, 469, 637, 1042
SfcI	CTRYAG	2 cut(s)	398, 549
SinI	GGWCC	1 cut(s)	535
SsiI	CCGC	2 cut(s)	54, 575
SspI	AATATT	1 cut(s)	943
SspMI	CTAG	2 cut(s)	33, 315
StyD4I	CCNGG	3 cut(s)	502, 650, 820
StyI	CCWWGG	3 cut(s)	634, 712, 1175
TaaI	ACNGT	3 cut(s)	424, 694, 1095
TaiI	ACGT	2 cut(s)	614, 734
TaqI	TCGA	3 cut(s)	256, 411, 457
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	3 cut(s)	194, 370, 640
Tru1I	TTAA	5 cut(s)	95, 141, 855, 1181, 1189
Tru9I	TTAA	5 cut(s)	95, 141, 855, 1181, 1189
TscAI	CASTG	3 cut(s)	80, 429, 1093
TseFI	GTSAC	2 cut(s)	688, 1114
TseI	GCWGC	7 cut(s)	113, 116, 359, 482, 485, 554, 606
Tsp45I	GTSAC	2 cut(s)	688, 1114
TspDTI	ATGAA	8 cut(s)	234, 534, 636, 741, 768, 917, 995, 1146
TspGWI	ACGGA	2 cut(s)	530, 969
TspRI	CASTG	3 cut(s)	80, 429, 1093
VneI	GTGCAC	1 cut(s)	1089
VpaK11BI	GGWCC	1 cut(s)	535
VspI	ATTAAT	1 cut(s)	855
XceI	RCATGY	1 cut(s)	407
XspI	CTAG	2 cut(s)	33, 315
Zsp2I	ATGCAT	1 cut(s)	1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.