Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003129

Physical Location & Seq

Genomic Coordinates Forward (+)

44827902 .. 44831560

Gene Structure 3659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG206700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCCGACGTCGCCACCCTATCGTGTGCTCGTTGCAGCAAACCCGCCAATCTTCAGTGTCCCAAGTGTGTGGAATTGAAGCTTCCTCGTGAAGATGCCGCTTTCTGCACTCAGGATTGTTTTAAGGCTTCATGGAGCTCGCATAAATCGGTACATTTAAAGGCCAAACAGTCCAATGGGACGGGAAATCCAGAGAACGAAGGCTGGGAATATTGCATGAAGAAAGGGCAGGGTCGAACTCCGAAACTTCCTTATTTTGATTGGACAGGGACATTGAGACCATATCCTATATCTAGTAAGCGTGTGGTACCTGCTCATATTGATTTACCTGATTGGGCAGCTGATGGAATCCCAAAAGAGGAGCCCAGTAGTGACCTGCAGCGTGTTGTTGAGATCAAAACTCCGGATCAAATTGAGAGGATGCGAGAAACTTGTCGAATTGCAAGAGAGGTTTTGGATGCAGCTGCTCGTGTCATACGACCTGGTATCACGACTGATGAAATTGATCGGGTGGTCCATGATGCTACTATTGCTGCGGGTGGATATCCATCTCCCCTCAATTATAATTTTTTCCCAAAGTCTTGCTGCACGTCAGTCAATGAAGTAATTTGCCATGGGATTCCTGATGCCAGTAAAACCTGGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24 zf-C6H2

Protein Analysis

215

Amino Acids

23.85

Weight (kDa)

7.5

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C6H2	PF15801	10 - 53	1.2e-14	zf-MYND-like zinc finger, mRNA-binding
Peptidase_M24	PF00557	139 - 210	7.8e-13	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45240 AT2G45240
fragaria_vesca	FvH4_7g11350 FvH4_7g11370
malus_domestica	MD02G1206000.v1.1 MD07G1118400.v1.1 MD07G1118600.v1.1
prunus_persica	Prupe.2G141300_v2.0.a1
pyrus_communis	pycom02g16990 pycom07g10610
rosa_chinensis	RchiOBHm_Chr1g0349561 RchiOBHm_Chr1g0349651 RchiOBHm_Chr4g0403521 RchiOBHm_Chr7g0223151
rosa_laevigata	RLG00000028538 RLG00000028542
rosa_multiflora	Rmu_sc0001593.1_g000008 Rmu_sc0002495.1_g000024 Rmu_sc0002495.1_g000038 Rmu_sc0006074.1_g000011 Rmu_sc0012293.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305410 Rroxscaffold_4G00305430
rosa_rugosa	Rorug01G0204500 Rorug05G0164500
rosa_samantha	Rh1AG221900 Rh1AG222400 Rh1BG188000 Rh1BG188300 Rh1CG206700 Rh1CG206800 Rh1CG207100 Rh1DG217400 Rh1DG217600
rosa_wichuraiana	Rw1G018860 Rw1G018910 Rw1G018950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	564
AatII	GACGTC	1 cut(s)	12
Acc36I	ACCTGC	2 cut(s)	319, 384
Acc65I	GGTACC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	307
AccIII	TCCGGA	1 cut(s)	403
AciI	CCGC	3 cut(s)	45, 99, 536
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	2 cut(s)	153, 309
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	1 cut(s)	79
AjiI	CACGTC	1 cut(s)	591
AjnI	CCWGG	2 cut(s)	481, 638
AluBI	AGCT	4 cut(s)	82, 138, 341, 464
AluI	AGCT	4 cut(s)	82, 138, 341, 464
Alw21I	GWGCWC	2 cut(s)	31, 140
Alw26I	GTCTC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	414
Aor13HI	TCCGGA	1 cut(s)	403
AoxI	GGCC	2 cut(s)	3, 162
ApeKI	GCWGC	7 cut(s)	36, 338, 379, 461, 464, 533, 585
Asp718I	GGTACC	1 cut(s)	307
AspS9I	GGNCC	1 cut(s)	514
AvaII	GGWCC	1 cut(s)	514
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	2 cut(s)	140, 366
BauI	CACGAG	2 cut(s)	87, 468
Bbv12I	GWGCWC	2 cut(s)	31, 140
BbvI	GCAGC	7 cut(s)	48, 350, 391, 451, 473, 520, 572
BccI	CCATC	2 cut(s)	338, 556
BciT130I	CCWGG	2 cut(s)	483, 640
BcoDI	GTCTC	1 cut(s)	271
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	377
BfuAI	ACCTGC	2 cut(s)	319, 384
BisI	GCNGC	8 cut(s)	37, 99, 339, 380, 462, 465, 534, 586
BlsI	GCNGC	8 cut(s)	38, 100, 340, 381, 463, 466, 535, 587
Bme1390I	CCNGG	2 cut(s)	483, 640
Bme18I	GGWCC	1 cut(s)	514
BmgBI	CACGTC	1 cut(s)	591
BmgT120I	GGNCC	1 cut(s)	514
BmiI	GGNNCC	2 cut(s)	309, 363
BmrFI	CCNGG	2 cut(s)	483, 640
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	5 cut(s)	85, 411, 448, 511, 616
BmuI	ACTGGG	1 cut(s)	360
BsaBI	GATNNNNATC	1 cut(s)	547
BsaHI	GRCGYC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	613
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse1I	ACTGG	2 cut(s)	366, 630
Bse8I	GATNNNNATC	1 cut(s)	547
BseAI	TCCGGA	1 cut(s)	403
BseBI	CCWGG	2 cut(s)	483, 640
BseDI	CCNNGG	1 cut(s)	613
BseGI	GGATG	2 cut(s)	426, 463
BseJI	GATNNNNATC	1 cut(s)	547
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	2 cut(s)	366, 630
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	7 cut(s)	48, 350, 391, 451, 473, 520, 572
BseYI	CCCAGC	1 cut(s)	204
BsgI	GTGCAG	2 cut(s)	91, 571
BshFI	GGCC	2 cut(s)	5, 164
BshNI	GGYRCC	1 cut(s)	307
BsiHKAI	GWGCWC	2 cut(s)	31, 140
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	3 cut(s)	45, 193, 283
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	271
BsmFI	GGGAC	3 cut(s)	45, 193, 283
BsnI	GGCC	2 cut(s)	5, 164
Bso31I	GGTCTC	1 cut(s)	271
Bsp1286I	GDGCHC	3 cut(s)	31, 140, 366
Bsp13I	TCCGGA	1 cut(s)	403
Bsp143I	GATC	3 cut(s)	393, 406, 505
Bsp19I	CCATGG	1 cut(s)	613
BspACI	CCGC	3 cut(s)	45, 99, 536
BspANI	GGCC	2 cut(s)	5, 164
BspCNI	CTCAG	1 cut(s)	124
BspEI	TCCGGA	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	309, 363
BspMAI	CTGCAG	1 cut(s)	381
BspMI	ACCTGC	2 cut(s)	319, 384
BspPI	GGATC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	271
BsrI	ACTGG	2 cut(s)	366, 630
BssECI	CCNNGG	1 cut(s)	613
BssMI	GATC	3 cut(s)	393, 406, 505
BssNI	GRCGYC	1 cut(s)	9
BssSI	CACGAG	2 cut(s)	87, 468
BssT1I	CCWWGG	1 cut(s)	613
Bst2BI	CACGAG	2 cut(s)	87, 468
Bst2UI	CCWGG	2 cut(s)	483, 640
Bst4CI	ACNGT	1 cut(s)	171
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	111
BstDSI	CCRYGG	1 cut(s)	613
BstF5I	GGATG	2 cut(s)	426, 463
BstKTI	GATC	3 cut(s)	396, 409, 508
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	3 cut(s)	393, 406, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 530
BstNI	CCWGG	2 cut(s)	483, 640
BstSCI	CCNGG	2 cut(s)	481, 638
BstSFI	CTRYAG	1 cut(s)	377
BstV1I	GCAGC	7 cut(s)	48, 350, 391, 451, 473, 520, 572
BstXI	CCANNNNNNTGG	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	5, 164
BtgI	CCRYGG	1 cut(s)	613
BtrI	CACGTC	1 cut(s)	591
BtsCI	GGATG	2 cut(s)	426, 463
BtsIMutI	CAGTG	1 cut(s)	62
BveI	ACCTGC	2 cut(s)	319, 384
Cac8I	GCNNGC	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	514
CsiI	ACCWGGT	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	152, 308
CviAII	CATG	4 cut(s)	132, 217, 518, 614
CviJI	RGCY	9 cut(s)	5, 82, 128, 138, 164, 204, 341, 364, 464
CviKI_1	RGCY	9 cut(s)	5, 82, 128, 138, 164, 204, 341, 364, 464
CviQI	GTAC	2 cut(s)	152, 308
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	3 cut(s)	395, 408, 507
DpnII	GATC	3 cut(s)	393, 406, 505
DraI	TTTAAA	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	613
Eco24I	GRGCYC	2 cut(s)	140, 366
Eco31I	GGTCTC	1 cut(s)	271
Eco32I	GATATC	1 cut(s)	545
Eco47I	GGWCC	1 cut(s)	514
Eco53kI	GAGCTC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	138
EcoRII	CCWGG	2 cut(s)	481, 638
EcoRV	GATATC	1 cut(s)	545
EcoT14I	CCWWGG	1 cut(s)	613
EcoT38I	GRGCYC	2 cut(s)	140, 366
ErhI	CCWWGG	1 cut(s)	613
FaeI	CATG	4 cut(s)	135, 220, 521, 617
FaqI	GGGAC	3 cut(s)	45, 193, 283
FatI	CATG	4 cut(s)	131, 216, 517, 613
FauI	CCCGC	2 cut(s)	52, 529
Fnu4HI	GCNGC	8 cut(s)	37, 99, 339, 380, 462, 465, 534, 586
FokI	GGATG	2 cut(s)	433, 470
FriOI	GRGCYC	2 cut(s)	140, 366
Fsp4HI	GCNGC	8 cut(s)	37, 99, 339, 380, 462, 465, 534, 586
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	8 cut(s)	37, 99, 339, 380, 462, 465, 534, 586
GsaI	CCCAGC	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	5, 164
HapII	CCGG	1 cut(s)	404
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	4 cut(s)	135, 220, 521, 617
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	2 cut(s)	348, 619
HpaII	CCGG	1 cut(s)	404
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	6 cut(s)	89, 113, 191, 404, 490, 623
Hpy99I	CGWCG	2 cut(s)	11, 14
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	171
HpyCH4IV	ACGT	2 cut(s)	9, 590
HpyCH4V	TGCA	7 cut(s)	36, 108, 216, 379, 443, 461, 588
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 530
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	2 cut(s)	9, 590
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	4 cut(s)	135, 220, 521, 617
Kpn2I	TCCGGA	1 cut(s)	403
KpnI	GGTACC	1 cut(s)	311
Kzo9I	GATC	3 cut(s)	393, 406, 505
LmnI	GCTCC	2 cut(s)	135, 361
Lsp1109I	GCAGC	7 cut(s)	48, 350, 391, 451, 473, 520, 572
LweI	GCATC	5 cut(s)	85, 411, 448, 511, 616
MabI	ACCWGGT	1 cut(s)	481
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	2 cut(s)	9, 590
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	3 cut(s)	395, 408, 507
MboI	GATC	3 cut(s)	393, 406, 505
MboII	GAAGA	3 cut(s)	44, 104, 232
MhlI	GDGCHC	3 cut(s)	31, 140, 366
MluCI	AATT	7 cut(s)	74, 411, 438, 501, 559, 565, 606
MnlI	CCTC	5 cut(s)	96, 352, 411, 442, 566
MroI	TCCGGA	1 cut(s)	403
MseI	TTAA	2 cut(s)	123, 158
MspA1I	CMGCKG	2 cut(s)	341, 464
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	2 cut(s)	483, 640
MvaI	CCWGG	2 cut(s)	483, 640
MwoI	GCNNNNNNNGC	2 cut(s)	11, 530
NcoI	CCATGG	1 cut(s)	613
NdeII	GATC	3 cut(s)	393, 406, 505
NlaIII	CATG	4 cut(s)	135, 220, 521, 617
NlaIV	GGNNCC	2 cut(s)	309, 363
NmuCI	GTSAC	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	1 cut(s)	475
PfeI	GAWTC	2 cut(s)	348, 619
PkrI	GCNGC	8 cut(s)	38, 100, 340, 381, 463, 466, 535, 587
PsiI	TTATAA	1 cut(s)	564
Psp124BI	GAGCTC	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	481, 638
PspFI	CCCAGC	1 cut(s)	204
PspGI	CCWGG	2 cut(s)	481, 638
PspN4I	GGNNCC	2 cut(s)	309, 363
PspPI	GGNCC	1 cut(s)	514
PstI	CTGCAG	1 cut(s)	381
PvuII	CAGCTG	2 cut(s)	341, 464
RsaI	GTAC	2 cut(s)	153, 309
RsaNI	GTAC	2 cut(s)	152, 308
SacI	GAGCTC	1 cut(s)	140
SaqAI	TTAA	2 cut(s)	123, 158
SatI	GCNGC	8 cut(s)	37, 99, 339, 380, 462, 465, 534, 586
Sau3AI	GATC	3 cut(s)	393, 406, 505
Sau96I	GGNCC	1 cut(s)	514
ScrFI	CCNGG	2 cut(s)	483, 640
SduI	GDGCHC	3 cut(s)	31, 140, 366
SexAI	ACCWGGT	1 cut(s)	481
SfaNI	GCATC	5 cut(s)	85, 411, 448, 511, 616
SfcI	CTRYAG	1 cut(s)	377
SinI	GGWCC	1 cut(s)	514
Sse9I	AATT	7 cut(s)	74, 411, 438, 501, 559, 565, 606
SsiI	CCGC	3 cut(s)	45, 99, 536
SspI	AATATT	1 cut(s)	212
SspMI	CTAG	1 cut(s)	294
SstI	GAGCTC	1 cut(s)	140
StyD4I	CCNGG	2 cut(s)	481, 638
StyI	CCWWGG	1 cut(s)	613
TaaI	ACNGT	1 cut(s)	171
TaiI	ACGT	2 cut(s)	12, 593
TaqI	TCGA	2 cut(s)	235, 436
TasI	AATT	7 cut(s)	74, 411, 438, 501, 559, 565, 606
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	348, 619
Tru1I	TTAA	2 cut(s)	123, 158
Tru9I	TTAA	2 cut(s)	123, 158
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	7 cut(s)	36, 338, 379, 461, 464, 533, 585
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	4 cut(s)	120, 233, 513, 615
TspRI	CASTG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	514
XspI	CTAG	1 cut(s)	294
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.