Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003129

Physical Location & Seq

Genomic Coordinates Reverse (-)

26090305 .. 26096204

Gene Structure 5900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00305430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCCGACGTCGCCACCCTCTCGTGTGCTCGTTGCAGCAAACCCGCCAATCTTCAGTGTCCCAAGTGTGTGGAATTGAAGCTTCCTCGTGAAGATGCCGCTTTCTGCACTCAGGATTGTTTTAAGGCTTCGTGGAGCTCGCATAAATCGGTACATTTAAAGGCCAAGCAGTCCAATGGGACGGGAAAGCCAGAGAACGAAGGCTGGCAATATTGCATGAAGAAAGGACAGGGTCGAACTCTGAAACTTCCTTATTTTGATTGGACTGGGACATTGAGACCATATCCTATATCTAGTAAGCGTGTGGTACCTGCTCATATTGATTTACCTGATTGGGCAGCTGATGGAATCCCAAAAGAGGAGCCCAGTAGTGACCTGCAGCGTGTTGTTGAGATTGCAAGAGAGGTTTTGGATGCAGCTGCTCGTGTCATACGACCTGGTATCACGACTGATGAAATTGATCGGGTGGTCCATGATGCTACTATTGCTGCGGTGTGTTTACTAGTGGATATCCATCTCCCCTCAATTATCATTTTTTCCCAAAGTCTTGCTGCACGTAGGTCAGTCAATGAAGTAATTTGCCATGGGATTCCTGATGCCAGGAAATTAGAGGATGGTGATATCGTCAATGTTGATGTTTCTGTGTATTACAAGGGTGTCCATGCTGATCTCAATGATACATACTTTGTGGGAAATGTTGATGAAGAGTCTCGTCGGCTAGTCCAGTGTACTTATGAGTGCTTGGAAAAAGCAATATCCATTGTAAAACCTGGAGTTAGATTTCGTGAAGTTGGAGAAGTCATTAATCGCCATGCTACGATGGCGGGATTTTCTGTGGGGGAGCTCTTTCATTGTGCACCAAATATTCCTCACTATGCAAGAAATAAAGCAGTTGGAGTGATGAAAGCTGGACAAACTTTTACGATTGAACCAATGATCAATGCAGGAATTTGGCGTGATCGAATGTGGCCTGACGGGTGGACTGATGTTACCGCAGATGGAAAACGAAGTGCTCAATTTGAGCACACACTTCTGGTGACTGAGACCGGAGTTGAAGTTCTTACAGCACGGTTGCCTTCATCACCAAAAGTGTACCCCTGGTTAGATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24 zf-C6H2

Protein Analysis

370

Amino Acids

41.05

Weight (kDa)

6.42

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C6H2	PF15801	10 - 53	2.7e-14	zf-MYND-like zinc finger, mRNA-binding
Peptidase_M24	PF00557	126 - 348	1.4e-39	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45240 AT2G45240
fragaria_vesca	FvH4_7g11350 FvH4_7g11370
malus_domestica	MD02G1206000.v1.1 MD07G1118400.v1.1 MD07G1118600.v1.1
prunus_persica	Prupe.2G141300_v2.0.a1
pyrus_communis	pycom02g16990 pycom07g10610
rosa_chinensis	RchiOBHm_Chr1g0349561 RchiOBHm_Chr1g0349651 RchiOBHm_Chr4g0403521 RchiOBHm_Chr7g0223151
rosa_laevigata	RLG00000028538 RLG00000028542
rosa_multiflora	Rmu_sc0001593.1_g000008 Rmu_sc0002495.1_g000024 Rmu_sc0002495.1_g000038 Rmu_sc0006074.1_g000011 Rmu_sc0012293.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305410 Rroxscaffold_4G00305430
rosa_rugosa	Rorug01G0204500 Rorug05G0164500
rosa_samantha	Rh1AG221900 Rh1AG222400 Rh1BG188000 Rh1BG188300 Rh1CG206700 Rh1CG206800 Rh1CG207100 Rh1DG217400 Rh1DG217600
rosa_wichuraiana	Rw1G018860 Rw1G018910 Rw1G018950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
Acc36I	ACCTGC	2 cut(s)	319, 384
Acc65I	GGTACC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	307
AciI	CCGC	5 cut(s)	45, 99, 491, 824, 993
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	948
AcuI	CTGAAG	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	4 cut(s)	153, 309, 730, 1094
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	3 cut(s)	79, 929, 1055
AhlI	ACTAGT	1 cut(s)	502
AjnI	CCWGG	4 cut(s)	436, 599, 769, 1097
AloI	GAACNNNNNNTCC	2 cut(s)	1041, 1073
AluBI	AGCT	6 cut(s)	82, 138, 341, 419, 844, 908
AluI	AGCT	6 cut(s)	82, 138, 341, 419, 844, 908
Alw21I	GWGCWC	6 cut(s)	31, 140, 846, 859, 1015, 1026
Alw26I	GTCTC	3 cut(s)	271, 714, 1037
Alw44I	GTGCAC	1 cut(s)	855
AoxI	GGCC	3 cut(s)	3, 162, 968
ApaLI	GTGCAC	1 cut(s)	855
ApeKI	GCWGC	7 cut(s)	36, 338, 379, 416, 419, 488, 551
ApoI	RAATTY	1 cut(s)	948
AseI	ATTAAT	1 cut(s)	804
Asp718I	GGTACC	1 cut(s)	307
AspS9I	GGNCC	1 cut(s)	469
AsuHPI	GGTGA	3 cut(s)	629, 1048, 1074
AvaII	GGWCC	1 cut(s)	469
BaeGI	GKGCMC	1 cut(s)	859
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	3 cut(s)	140, 366, 846
BauI	CACGAG	3 cut(s)	22, 87, 423
Bbv12I	GWGCWC	6 cut(s)	31, 140, 846, 859, 1015, 1026
BbvI	GCAGC	7 cut(s)	48, 350, 391, 406, 428, 475, 538
BccI	CCATC	5 cut(s)	338, 522, 608, 814, 992
BciT130I	CCWGG	4 cut(s)	438, 601, 771, 1099
BclI	TGATCA	1 cut(s)	936
BcoDI	GTCTC	3 cut(s)	271, 714, 1037
BcuI	ACTAGT	1 cut(s)	502
BfaI	CTAG	3 cut(s)	294, 503, 719
BfmI	CTRYAG	1 cut(s)	377
BfuAI	ACCTGC	2 cut(s)	319, 384
BisI	GCNGC	8 cut(s)	37, 99, 339, 380, 417, 420, 489, 552
BlsI	GCNGC	8 cut(s)	38, 100, 340, 381, 418, 421, 490, 553
Bme1390I	CCNGG	4 cut(s)	438, 601, 771, 1099
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	2 cut(s)	309, 363
BmrFI	CCNGG	4 cut(s)	438, 601, 771, 1099
BmrI	ACTGGG	2 cut(s)	276, 360
BmsI	GCATC	5 cut(s)	85, 403, 466, 586, 1096
BmuI	ACTGGG	2 cut(s)	276, 360
BpmI	CTGGAG	1 cut(s)	792
BsaAI	YACGTR	1 cut(s)	557
BsaBI	GATNNNNATC	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	9
BsaI	GGTCTC	2 cut(s)	271, 1037
BsaJI	CCNNGG	2 cut(s)	583, 1097
BsaWI	WCCGGW	1 cut(s)	1046
BsaXI	ACNNNNNCTCC	2 cut(s)	1041, 1071
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse1I	ACTGG	3 cut(s)	271, 366, 724
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	4 cut(s)	438, 601, 771, 1099
BseDI	CCNNGG	2 cut(s)	583, 1097
BseGI	GGATG	2 cut(s)	418, 619
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	2 cut(s)	125, 1032
BseNI	ACTGG	3 cut(s)	271, 366, 724
BseRI	GAGGAG	1 cut(s)	374
BseSI	GKGCMC	1 cut(s)	859
BseXI	GCAGC	7 cut(s)	48, 350, 391, 406, 428, 475, 538
BsgI	GTGCAG	2 cut(s)	91, 537
BshFI	GGCC	3 cut(s)	5, 164, 970
BshNI	GGYRCC	1 cut(s)	307
BsiHKAI	GWGCWC	6 cut(s)	31, 140, 846, 859, 1015, 1026
BsiSI	CCGG	1 cut(s)	1047
BslFI	GGGAC	3 cut(s)	45, 193, 283
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	3 cut(s)	271, 714, 1037
BsmFI	GGGAC	3 cut(s)	45, 193, 283
BsnI	GGCC	3 cut(s)	5, 164, 970
Bso31I	GGTCTC	2 cut(s)	271, 1037
Bsp1286I	GDGCHC	7 cut(s)	31, 140, 366, 846, 859, 1015, 1026
Bsp143I	GATC	4 cut(s)	460, 667, 936, 958
Bsp19I	CCATGG	1 cut(s)	583
BspACI	CCGC	5 cut(s)	45, 99, 491, 824, 993
BspANI	GGCC	3 cut(s)	5, 164, 970
BspCNI	CTCAG	2 cut(s)	124, 1033
BspLI	GGNNCC	2 cut(s)	309, 363
BspMAI	CTGCAG	1 cut(s)	381
BspMI	ACCTGC	2 cut(s)	319, 384
BspT107I	GGYRCC	1 cut(s)	307
BspTNI	GGTCTC	2 cut(s)	271, 1037
BsrI	ACTGG	3 cut(s)	271, 366, 724
BssECI	CCNNGG	2 cut(s)	583, 1097
BssMI	GATC	4 cut(s)	460, 667, 936, 958
BssNI	GRCGYC	1 cut(s)	9
BssSI	CACGAG	3 cut(s)	22, 87, 423
BssT1I	CCWWGG	1 cut(s)	583
Bst2BI	CACGAG	3 cut(s)	22, 87, 423
Bst2UI	CCWGG	4 cut(s)	438, 601, 771, 1099
Bst4CI	ACNGT	1 cut(s)	1071
Bst6I	CTCTTC	1 cut(s)	699
BstACI	GRCGYC	1 cut(s)	9
BstBAI	YACGTR	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	140, 206
BstDEI	CTNAG	2 cut(s)	111, 1041
BstDSI	CCRYGG	1 cut(s)	583
BstF5I	GGATG	2 cut(s)	418, 619
BstKTI	GATC	4 cut(s)	463, 670, 939, 961
BstMAI	GTCTC	3 cut(s)	271, 714, 1037
BstMBI	GATC	4 cut(s)	460, 667, 936, 958
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 485, 821
BstNI	CCWGG	4 cut(s)	438, 601, 771, 1099
BstSCI	CCNGG	4 cut(s)	436, 599, 769, 1097
BstSFI	CTRYAG	1 cut(s)	377
BstSLI	GKGCMC	1 cut(s)	859
BstV1I	GCAGC	7 cut(s)	48, 350, 391, 406, 428, 475, 538
BstXI	CCANNNNNNTGG	1 cut(s)	70
BsuRI	GGCC	3 cut(s)	5, 164, 970
BtgI	CCRYGG	1 cut(s)	583
BtsCI	GGATG	2 cut(s)	418, 619
BtsIMutI	CAGTG	2 cut(s)	62, 731
BveI	ACCTGC	2 cut(s)	319, 384
Cac8I	GCNNGC	2 cut(s)	140, 206
Cfr13I	GGNCC	1 cut(s)	469
CsiI	ACCWGGT	1 cut(s)	436
Csp6I	GTAC	4 cut(s)	152, 308, 729, 1093
CviAII	CATG	5 cut(s)	217, 473, 584, 662, 812
CviQI	GTAC	4 cut(s)	152, 308, 729, 1093
DdeI	CTNAG	2 cut(s)	111, 1041
DpnI	GATC	4 cut(s)	462, 669, 938, 960
DpnII	GATC	4 cut(s)	460, 667, 936, 958
DraI	TTTAAA	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	699
EarI	CTCTTC	1 cut(s)	699
Ecl136II	GAGCTC	2 cut(s)	138, 844
Eco130I	CCWWGG	1 cut(s)	583
Eco24I	GRGCYC	3 cut(s)	140, 366, 846
Eco31I	GGTCTC	2 cut(s)	271, 1037
Eco32I	GATATC	2 cut(s)	511, 622
Eco47I	GGWCC	1 cut(s)	469
Eco53kI	GAGCTC	2 cut(s)	138, 844
Eco57I	CTGAAG	1 cut(s)	38
EcoICRI	GAGCTC	2 cut(s)	138, 844
EcoRII	CCWGG	4 cut(s)	436, 599, 769, 1097
EcoRV	GATATC	2 cut(s)	511, 622
EcoT14I	CCWWGG	1 cut(s)	583
EcoT38I	GRGCYC	3 cut(s)	140, 366, 846
ErhI	CCWWGG	1 cut(s)	583
FaeI	CATG	5 cut(s)	220, 476, 587, 665, 815
FaqI	GGGAC	3 cut(s)	45, 193, 283
FatI	CATG	5 cut(s)	216, 472, 583, 661, 811
FauI	CCCGC	2 cut(s)	52, 817
FbaI	TGATCA	1 cut(s)	936
Fnu4HI	GCNGC	8 cut(s)	37, 99, 339, 380, 417, 420, 489, 552
FokI	GGATG	2 cut(s)	425, 626
FriOI	GRGCYC	3 cut(s)	140, 366, 846
Fsp4HI	GCNGC	8 cut(s)	37, 99, 339, 380, 417, 420, 489, 552
FspBI	CTAG	3 cut(s)	294, 503, 719
GluI	GCNGC	8 cut(s)	37, 99, 339, 380, 417, 420, 489, 552
GsuI	CTGGAG	1 cut(s)	792
HaeIII	GGCC	3 cut(s)	5, 164, 970
HapII	CCGG	1 cut(s)	1047
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	5 cut(s)	220, 476, 587, 665, 815
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	3 cut(s)	348, 589, 707
HpaII	CCGG	1 cut(s)	1047
HphI	GGTGA	3 cut(s)	629, 1048, 1074
Hpy166II	GTNNAC	5 cut(s)	500, 729, 857, 981, 1093
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	5 cut(s)	89, 113, 445, 593, 785
Hpy8I	GTNNAC	5 cut(s)	500, 729, 857, 981, 1093
Hpy99I	CGWCG	3 cut(s)	11, 14, 717
HpyAV	CCTTC	2 cut(s)	194, 1086
HpyCH4III	ACNGT	1 cut(s)	1071
HpyCH4IV	ACGT	2 cut(s)	9, 556
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 485, 821
HpyF3I	CTNAG	2 cut(s)	111, 1041
HpySE526I	ACGT	2 cut(s)	9, 556
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	5 cut(s)	220, 476, 587, 665, 815
KpnI	GGTACC	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	936
Kzo9I	GATC	4 cut(s)	460, 667, 936, 958
LmnI	GCTCC	3 cut(s)	135, 361, 841
Lsp1109I	GCAGC	7 cut(s)	48, 350, 391, 406, 428, 475, 538
LweI	GCATC	5 cut(s)	85, 403, 466, 586, 1096
MabI	ACCWGGT	1 cut(s)	436
MaeI	CTAG	3 cut(s)	294, 503, 719
MaeII	ACGT	2 cut(s)	9, 556
MaeIII	GTNAC	3 cut(s)	371, 988, 1036
MalI	GATC	4 cut(s)	462, 669, 938, 960
MboI	GATC	4 cut(s)	460, 667, 936, 958
MboII	GAAGA	4 cut(s)	44, 104, 232, 716
MhlI	GDGCHC	7 cut(s)	31, 140, 366, 846, 859, 1015, 1026
MluCI	AATT	7 cut(s)	74, 456, 525, 576, 605, 948, 1016
MlyI	GAGTC	1 cut(s)	716
MmeI	TCCRAC	2 cut(s)	772, 874
MnlI	CCTC	7 cut(s)	29, 96, 352, 397, 532, 604, 879
MseI	TTAA	3 cut(s)	123, 158, 804
MspA1I	CMGCKG	2 cut(s)	341, 419
MspI	CCGG	1 cut(s)	1047
MspR9I	CCNGG	4 cut(s)	438, 601, 771, 1099
MvaI	CCWGG	4 cut(s)	438, 601, 771, 1099
MwoI	GCNNNNNNNGC	3 cut(s)	11, 485, 821
NcoI	CCATGG	1 cut(s)	583
NdeII	GATC	4 cut(s)	460, 667, 936, 958
NlaIII	CATG	5 cut(s)	220, 476, 587, 665, 815
NlaIV	GGNNCC	2 cut(s)	309, 363
NmuCI	GTSAC	2 cut(s)	371, 1036
PcsI	WCGNNNNNNNCGW	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	348, 589
PflFI	GACNNNGTC	1 cut(s)	231
PkrI	GCNGC	8 cut(s)	38, 100, 340, 381, 418, 421, 490, 553
PleI	GAGTC	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	715
Ppu21I	YACGTR	1 cut(s)	557
PshBI	ATTAAT	1 cut(s)	804
Psp124BI	GAGCTC	2 cut(s)	140, 846
Psp6I	CCWGG	4 cut(s)	436, 599, 769, 1097
PspGI	CCWGG	4 cut(s)	436, 599, 769, 1097
PspN4I	GGNNCC	2 cut(s)	309, 363
PspPI	GGNCC	1 cut(s)	469
PstI	CTGCAG	1 cut(s)	381
PsyI	GACNNNGTC	1 cut(s)	231
PvuII	CAGCTG	2 cut(s)	341, 419
RsaI	GTAC	4 cut(s)	153, 309, 730, 1094
RsaNI	GTAC	4 cut(s)	152, 308, 729, 1093
SacI	GAGCTC	2 cut(s)	140, 846
SaqAI	TTAA	3 cut(s)	123, 158, 804
SatI	GCNGC	8 cut(s)	37, 99, 339, 380, 417, 420, 489, 552
Sau3AI	GATC	4 cut(s)	460, 667, 936, 958
Sau96I	GGNCC	1 cut(s)	469
SchI	GAGTC	1 cut(s)	716
ScrFI	CCNGG	4 cut(s)	438, 601, 771, 1099
SduI	GDGCHC	7 cut(s)	31, 140, 366, 846, 859, 1015, 1026
SexAI	ACCWGGT	1 cut(s)	436
SfaNI	GCATC	5 cut(s)	85, 403, 466, 586, 1096
SfcI	CTRYAG	1 cut(s)	377
SinI	GGWCC	1 cut(s)	469
SpeI	ACTAGT	1 cut(s)	502
Sse9I	AATT	7 cut(s)	74, 456, 525, 576, 605, 948, 1016
SsiI	CCGC	5 cut(s)	45, 99, 491, 824, 993
SspI	AATATT	2 cut(s)	212, 865
SspMI	CTAG	3 cut(s)	294, 503, 719
SstI	GAGCTC	2 cut(s)	140, 846
StyD4I	CCNGG	4 cut(s)	436, 599, 769, 1097
StyI	CCWWGG	1 cut(s)	583
TaaI	ACNGT	1 cut(s)	1071
TaiI	ACGT	2 cut(s)	12, 559
TaqI	TCGA	2 cut(s)	235, 961
TasI	AATT	7 cut(s)	74, 456, 525, 576, 605, 948, 1016
TatI	WGTACW	1 cut(s)	728
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	348, 589
Tru1I	TTAA	3 cut(s)	123, 158, 804
Tru9I	TTAA	3 cut(s)	123, 158, 804
TscAI	CASTG	2 cut(s)	62, 731
TseFI	GTSAC	2 cut(s)	371, 1036
TseI	GCWGC	7 cut(s)	36, 338, 379, 416, 419, 488, 551
Tsp45I	GTSAC	2 cut(s)	371, 1036
TspDTI	ATGAA	7 cut(s)	233, 468, 585, 717, 839, 917, 1068
TspRI	CASTG	2 cut(s)	62, 731
Tth111I	GACNNNGTC	1 cut(s)	231
VneI	GTGCAC	1 cut(s)	855
VpaK11BI	GGWCC	1 cut(s)	469
VspI	ATTAAT	1 cut(s)	804
XapI	RAATTY	1 cut(s)	948
XspI	CTAG	3 cut(s)	294, 503, 719
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.