Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002495.1

Orthogroup ID

OG0003129

Physical Location & Seq

Genomic Coordinates Forward (+)

184409 .. 189480

Gene Structure 5072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002495.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atggccgacgtcgccaccctatcgtgtgctcgttgcagcaaacccgccaatcttcagtgtcccaagtgtgtggaattgaagcttcctcgtgaagatgccgctttctgcactcaggattgttttaaggctttgtggagctcgcataaatcggtacatttaaaggccaagcagtccaatggggcgggaaatccagagaacgaaggctggcaatattgcttgaagaaaggacagggtcgaactccgaaacttccttattttgattggacagggacattgggaccatatcctatatctagtaagcgtgtggtacctgctcatattgatttacctgattgggcagctgatggaatcccaaaagaggagcccagtagtgacctgcagcgtgttgttgagatcaaaactccggatcaaattgagaggatgcgagaaacttgtcaaattgcaagagaggttttggatgcagctgctcgtgttatacaacctggtatcacgactgatgaaattgatcgggtggtccatgatgctactattgctgcgggtatgaaactagaggatggtgatatcgtcaatgttgatgtgtctgtgttttacaagggtgtccatgctgatctcaatgatacatactttgtgggaaatgttgatgaagagtctcgacggctagtccagtgtacttatgagtgcttggaaaaagcaatatccattgtaaaacctggagttagatttcgtgaagttggagaagtcattaatcgccatgctacgatggcgggattttctgtggcgaaatcatattgtggtcatggtataggggagctctttcattgtgcaccaaatattcctcactatgcaagaaataaagcagttggagtgatgaaagctggacaaacttttacgattgaaccaatgatcaatgcaggaatttggcgtgatcgaatgtggcctgacgggtggactgatgttactgcagatggaaaacgaagtgctcaatttgagcacacactactggtgactgagaccggagttgaagttcttacagcacggttgccttcatcgctaaaagtgtacccctggttagatgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24 zf-C6H2

Protein Analysis

359

Amino Acids

39.77

Weight (kDa)

6.09

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45240 AT2G45240
fragaria_vesca	FvH4_7g11350 FvH4_7g11370
malus_domestica	MD02G1206000.v1.1 MD07G1118400.v1.1 MD07G1118600.v1.1
prunus_persica	Prupe.2G141300_v2.0.a1
pyrus_communis	pycom02g16990 pycom07g10610
rosa_chinensis	RchiOBHm_Chr1g0349561 RchiOBHm_Chr1g0349651 RchiOBHm_Chr4g0403521 RchiOBHm_Chr7g0223151
rosa_laevigata	RLG00000028538 RLG00000028542
rosa_multiflora	Rmu_sc0001593.1_g000008 Rmu_sc0002495.1_g000024 Rmu_sc0002495.1_g000038 Rmu_sc0006074.1_g000011 Rmu_sc0012293.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305410 Rroxscaffold_4G00305430
rosa_rugosa	Rorug01G0204500 Rorug05G0164500
rosa_samantha	Rh1AG221900 Rh1AG222400 Rh1BG188000 Rh1BG188300 Rh1CG206700 Rh1CG206800 Rh1CG207100 Rh1DG217400 Rh1DG217600
rosa_wichuraiana	Rw1G018860 Rw1G018910 Rw1G018950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
Acc36I	ACCTGC	2 cut(s)	319, 384
Acc65I	GGTACC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	307
AccIII	TCCGGA	1 cut(s)	403
AciI	CCGC	5 cut(s)	45, 99, 182, 536, 764
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	915
AcuI	CTGAAG	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	4 cut(s)	153, 309, 670, 1061
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	4 cut(s)	79, 220, 896, 1022
AhdI	GACNNNNNGTC	1 cut(s)	659
AjnI	CCWGG	3 cut(s)	481, 709, 1064
AloI	GAACNNNNNNTCC	2 cut(s)	1008, 1040
AluBI	AGCT	6 cut(s)	82, 138, 341, 464, 811, 875
AluI	AGCT	6 cut(s)	82, 138, 341, 464, 811, 875
Alw21I	GWGCWC	6 cut(s)	31, 140, 813, 826, 982, 993
Alw26I	GTCTC	2 cut(s)	654, 1004
Alw44I	GTGCAC	1 cut(s)	822
AlwI	GGATC	1 cut(s)	414
Aor13HI	TCCGGA	1 cut(s)	403
AoxI	GGCC	3 cut(s)	3, 162, 935
ApaLI	GTGCAC	1 cut(s)	822
ApeKI	GCWGC	6 cut(s)	36, 338, 379, 461, 464, 533
ApoI	RAATTY	1 cut(s)	915
AseI	ATTAAT	1 cut(s)	744
Asp718I	GGTACC	1 cut(s)	307
AspS9I	GGNCC	2 cut(s)	278, 514
AsuHPI	GGTGA	2 cut(s)	569, 1015
AvaII	GGWCC	2 cut(s)	278, 514
BaeGI	GKGCMC	1 cut(s)	826
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	3 cut(s)	140, 366, 813
BauI	CACGAG	2 cut(s)	87, 468
Bbv12I	GWGCWC	6 cut(s)	31, 140, 813, 826, 982, 993
BbvI	GCAGC	6 cut(s)	48, 350, 391, 451, 473, 520
BccI	CCATC	4 cut(s)	338, 548, 754, 959
BceAI	ACGGC	1 cut(s)	671
BciT130I	CCWGG	3 cut(s)	483, 711, 1066
BclI	TGATCA	1 cut(s)	903
BcoDI	GTCTC	2 cut(s)	654, 1004
BfaI	CTAG	3 cut(s)	294, 548, 659
BfmI	CTRYAG	2 cut(s)	377, 960
BfuAI	ACCTGC	2 cut(s)	319, 384
BisI	GCNGC	7 cut(s)	37, 99, 339, 380, 462, 465, 534
BlsI	GCNGC	7 cut(s)	38, 100, 340, 381, 463, 466, 535
Bme1390I	CCNGG	3 cut(s)	483, 711, 1066
Bme18I	GGWCC	2 cut(s)	278, 514
BmeRI	GACNNNNNGTC	1 cut(s)	659
BmgT120I	GGNCC	2 cut(s)	278, 514
BmiI	GGNNCC	3 cut(s)	279, 309, 363
BmrFI	CCNGG	3 cut(s)	483, 711, 1066
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	5 cut(s)	85, 411, 448, 511, 1063
BmuI	ACTGGG	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	732
BsaHI	GRCGYC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	1004
BsaJI	CCNNGG	1 cut(s)	1064
BsaWI	WCCGGW	2 cut(s)	403, 1013
BsaXI	ACNNNNNCTCC	2 cut(s)	1008, 1038
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse1I	ACTGG	3 cut(s)	366, 664, 1005
BseAI	TCCGGA	1 cut(s)	403
BseBI	CCWGG	3 cut(s)	483, 711, 1066
BseDI	CCNNGG	1 cut(s)	1064
BseGI	GGATG	3 cut(s)	426, 463, 559
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	2 cut(s)	125, 999
BseNI	ACTGG	3 cut(s)	366, 664, 1005
BseRI	GAGGAG	1 cut(s)	374
BseSI	GKGCMC	1 cut(s)	826
BseXI	GCAGC	6 cut(s)	48, 350, 391, 451, 473, 520
BsgI	GTGCAG	1 cut(s)	91
BshFI	GGCC	3 cut(s)	5, 164, 937
BshNI	GGYRCC	1 cut(s)	307
BsiHKAI	GWGCWC	6 cut(s)	31, 140, 813, 826, 982, 993
BsiSI	CCGG	2 cut(s)	404, 1014
BslFI	GGGAC	3 cut(s)	45, 283, 291
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	2 cut(s)	654, 1004
BsmFI	GGGAC	3 cut(s)	45, 283, 291
BsnI	GGCC	3 cut(s)	5, 164, 937
Bso31I	GGTCTC	1 cut(s)	1004
Bsp1286I	GDGCHC	7 cut(s)	31, 140, 366, 813, 826, 982, 993
Bsp13I	TCCGGA	1 cut(s)	403
Bsp143I	GATC	6 cut(s)	393, 406, 505, 607, 903, 925
BspACI	CCGC	5 cut(s)	45, 99, 182, 536, 764
BspANI	GGCC	3 cut(s)	5, 164, 937
BspCNI	CTCAG	2 cut(s)	124, 1000
BspEI	TCCGGA	1 cut(s)	403
BspLI	GGNNCC	3 cut(s)	279, 309, 363
BspMAI	CTGCAG	2 cut(s)	381, 964
BspMI	ACCTGC	2 cut(s)	319, 384
BspPI	GGATC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	1004
BsrI	ACTGG	3 cut(s)	366, 664, 1005
BssECI	CCNNGG	1 cut(s)	1064
BssMI	GATC	6 cut(s)	393, 406, 505, 607, 903, 925
BssNI	GRCGYC	1 cut(s)	9
BssSI	CACGAG	2 cut(s)	87, 468
Bst2BI	CACGAG	2 cut(s)	87, 468
Bst2UI	CCWGG	3 cut(s)	483, 711, 1066
Bst4CI	ACNGT	1 cut(s)	1038
Bst6I	CTCTTC	1 cut(s)	639
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	140, 206
BstDEI	CTNAG	2 cut(s)	111, 1008
BstF5I	GGATG	3 cut(s)	426, 463, 559
BstKTI	GATC	6 cut(s)	396, 409, 508, 610, 906, 928
BstMAI	GTCTC	2 cut(s)	654, 1004
BstMBI	GATC	6 cut(s)	393, 406, 505, 607, 903, 925
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 530, 761, 1048
BstNI	CCWGG	3 cut(s)	483, 711, 1066
BstSCI	CCNGG	3 cut(s)	481, 709, 1064
BstSFI	CTRYAG	2 cut(s)	377, 960
BstSLI	GKGCMC	1 cut(s)	826
BstV1I	GCAGC	6 cut(s)	48, 350, 391, 451, 473, 520
BstXI	CCANNNNNNTGG	1 cut(s)	70
BsuRI	GGCC	3 cut(s)	5, 164, 937
BtgZI	GCGATG	1 cut(s)	1032
BtsCI	GGATG	3 cut(s)	426, 463, 559
BtsIMutI	CAGTG	2 cut(s)	62, 671
BveI	ACCTGC	2 cut(s)	319, 384
Cac8I	GCNNGC	2 cut(s)	140, 206
Cfr13I	GGNCC	2 cut(s)	278, 514
CsiI	ACCWGGT	1 cut(s)	481
Csp6I	GTAC	4 cut(s)	152, 308, 669, 1060
CviAII	CATG	4 cut(s)	518, 602, 752, 797
CviQI	GTAC	4 cut(s)	152, 308, 669, 1060
DdeI	CTNAG	2 cut(s)	111, 1008
DpnI	GATC	6 cut(s)	395, 408, 507, 609, 905, 927
DpnII	GATC	6 cut(s)	393, 406, 505, 607, 903, 925
DraI	TTTAAA	1 cut(s)	159
DriI	GACNNNNNGTC	1 cut(s)	659
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	639
Eam1105I	GACNNNNNGTC	1 cut(s)	659
EarI	CTCTTC	1 cut(s)	639
Ecl136II	GAGCTC	2 cut(s)	138, 811
Eco24I	GRGCYC	3 cut(s)	140, 366, 813
Eco31I	GGTCTC	1 cut(s)	1004
Eco32I	GATATC	1 cut(s)	562
Eco47I	GGWCC	2 cut(s)	278, 514
Eco53kI	GAGCTC	2 cut(s)	138, 811
Eco57I	CTGAAG	1 cut(s)	38
EcoICRI	GAGCTC	2 cut(s)	138, 811
EcoRII	CCWGG	3 cut(s)	481, 709, 1064
EcoRV	GATATC	1 cut(s)	562
EcoT38I	GRGCYC	3 cut(s)	140, 366, 813
FaeI	CATG	4 cut(s)	521, 605, 755, 800
FaqI	GGGAC	3 cut(s)	45, 283, 291
FatI	CATG	4 cut(s)	517, 601, 751, 796
FauI	CCCGC	4 cut(s)	52, 175, 529, 757
FbaI	TGATCA	1 cut(s)	903
Fnu4HI	GCNGC	7 cut(s)	37, 99, 339, 380, 462, 465, 534
FokI	GGATG	3 cut(s)	433, 470, 566
FriOI	GRGCYC	3 cut(s)	140, 366, 813
Fsp4HI	GCNGC	7 cut(s)	37, 99, 339, 380, 462, 465, 534
FspBI	CTAG	3 cut(s)	294, 548, 659
GluI	GCNGC	7 cut(s)	37, 99, 339, 380, 462, 465, 534
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	3 cut(s)	5, 164, 937
HapII	CCGG	2 cut(s)	404, 1014
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	4 cut(s)	521, 605, 755, 800
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	2 cut(s)	348, 647
HpaII	CCGG	2 cut(s)	404, 1014
HphI	GGTGA	2 cut(s)	569, 1015
Hpy166II	GTNNAC	4 cut(s)	669, 824, 948, 1060
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	7 cut(s)	89, 113, 191, 404, 490, 651, 725
Hpy8I	GTNNAC	4 cut(s)	669, 824, 948, 1060
Hpy99I	CGWCG	3 cut(s)	11, 14, 657
HpyAV	CCTTC	2 cut(s)	194, 1053
HpyCH4III	ACNGT	1 cut(s)	1038
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	9 cut(s)	36, 108, 379, 443, 461, 824, 845, 911, 962
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 530, 761, 1048
HpyF3I	CTNAG	2 cut(s)	111, 1008
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	4 cut(s)	521, 605, 755, 800
Kpn2I	TCCGGA	1 cut(s)	403
KpnI	GGTACC	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	903
Kzo9I	GATC	6 cut(s)	393, 406, 505, 607, 903, 925
LmnI	GCTCC	3 cut(s)	135, 361, 808
Lsp1109I	GCAGC	6 cut(s)	48, 350, 391, 451, 473, 520
LweI	GCATC	5 cut(s)	85, 411, 448, 511, 1063
MabI	ACCWGGT	1 cut(s)	481
MaeI	CTAG	3 cut(s)	294, 548, 659
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	3 cut(s)	371, 955, 1003
MalI	GATC	6 cut(s)	395, 408, 507, 609, 905, 927
MboI	GATC	6 cut(s)	393, 406, 505, 607, 903, 925
MboII	GAAGA	4 cut(s)	44, 104, 232, 656
MhlI	GDGCHC	7 cut(s)	31, 140, 366, 813, 826, 982, 993
MluCI	AATT	6 cut(s)	74, 411, 438, 501, 915, 983
MlyI	GAGTC	1 cut(s)	656
MmeI	TCCRAC	2 cut(s)	712, 841
MnlI	CCTC	6 cut(s)	96, 352, 411, 442, 544, 846
MroI	TCCGGA	1 cut(s)	403
MseI	TTAA	3 cut(s)	123, 158, 744
MspA1I	CMGCKG	2 cut(s)	341, 464
MspI	CCGG	2 cut(s)	404, 1014
MspR9I	CCNGG	3 cut(s)	483, 711, 1066
MvaI	CCWGG	3 cut(s)	483, 711, 1066
MwoI	GCNNNNNNNGC	4 cut(s)	11, 530, 761, 1048
NdeII	GATC	6 cut(s)	393, 406, 505, 607, 903, 925
NlaIII	CATG	4 cut(s)	521, 605, 755, 800
NlaIV	GGNNCC	3 cut(s)	279, 309, 363
NmuCI	GTSAC	2 cut(s)	371, 1003
PfeI	GAWTC	1 cut(s)	348
PflFI	GACNNNGTC	1 cut(s)	231
PkrI	GCNGC	7 cut(s)	38, 100, 340, 381, 463, 466, 535
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
PshBI	ATTAAT	1 cut(s)	744
Psp124BI	GAGCTC	2 cut(s)	140, 813
Psp6I	CCWGG	3 cut(s)	481, 709, 1064
PspGI	CCWGG	3 cut(s)	481, 709, 1064
PspN4I	GGNNCC	3 cut(s)	279, 309, 363
PspPI	GGNCC	2 cut(s)	278, 514
PstI	CTGCAG	2 cut(s)	381, 964
PsyI	GACNNNGTC	1 cut(s)	231
PvuII	CAGCTG	2 cut(s)	341, 464
RsaI	GTAC	4 cut(s)	153, 309, 670, 1061
RsaNI	GTAC	4 cut(s)	152, 308, 669, 1060
SacI	GAGCTC	2 cut(s)	140, 813
SaqAI	TTAA	3 cut(s)	123, 158, 744
SatI	GCNGC	7 cut(s)	37, 99, 339, 380, 462, 465, 534
Sau3AI	GATC	6 cut(s)	393, 406, 505, 607, 903, 925
Sau96I	GGNCC	2 cut(s)	278, 514
SchI	GAGTC	1 cut(s)	656
ScrFI	CCNGG	3 cut(s)	483, 711, 1066
SduI	GDGCHC	7 cut(s)	31, 140, 366, 813, 826, 982, 993
SexAI	ACCWGGT	1 cut(s)	481
SfaNI	GCATC	5 cut(s)	85, 411, 448, 511, 1063
SfcI	CTRYAG	2 cut(s)	377, 960
SinI	GGWCC	2 cut(s)	278, 514
Sse9I	AATT	6 cut(s)	74, 411, 438, 501, 915, 983
SsiI	CCGC	5 cut(s)	45, 99, 182, 536, 764
SspI	AATATT	2 cut(s)	212, 832
SspMI	CTAG	3 cut(s)	294, 548, 659
SstI	GAGCTC	2 cut(s)	140, 813
StyD4I	CCNGG	3 cut(s)	481, 709, 1064
TaaI	ACNGT	1 cut(s)	1038
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	3 cut(s)	235, 652, 928
TasI	AATT	6 cut(s)	74, 411, 438, 501, 915, 983
TatI	WGTACW	1 cut(s)	668
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	348
Tru1I	TTAA	3 cut(s)	123, 158, 744
Tru9I	TTAA	3 cut(s)	123, 158, 744
TscAI	CASTG	2 cut(s)	62, 671
TseFI	GTSAC	2 cut(s)	371, 1003
TseI	GCWGC	6 cut(s)	36, 338, 379, 461, 464, 533
Tsp45I	GTSAC	2 cut(s)	371, 1003
TspDTI	ATGAA	6 cut(s)	513, 557, 657, 806, 884, 1035
TspRI	CASTG	2 cut(s)	62, 671
Tth111I	GACNNNGTC	1 cut(s)	231
VneI	GTGCAC	1 cut(s)	822
VpaK11BI	GGWCC	2 cut(s)	278, 514
VspI	ATTAAT	1 cut(s)	744
XapI	RAATTY	1 cut(s)	915
XspI	CTAG	3 cut(s)	294, 548, 659
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.