RchiOBHm_Chr1g0349561

zf-MYND-like zinc finger, mRNA-binding

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
42644174 .. 42649776
5603 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57553

Sequence Viewer

Length: 1212 bp
ATGGATCAAGTCAAATCTCGCCTGAGGCTACTGAATGCGATCATGGCCGACGTCGCCACCCTATCGTGTGCTCGTTGCAGCAAACCCGCCAATCTTCAGTGTCCCAAGTGTGTGGAATTGAAACTTCCTCGTGAAGATGCCGCTTTCTGCACTCAGGATTGTTTTAAGGCTTCGTGGAGCTCGCATAAATCGGTACATTTAAAGGCCAAGCAGTCCAATGGGGCGGGAAATCCAGAGAACGAAGGCTGGCAATATTGCTTGAAGAAAGGACAGGGTCGAACTCCGAAACTTCCTTATTTTGATTGGACAGGGACATTGAGACCATATCCTATATCTAGTAAGCGTGTGGTACCTGCTCATATTGATTTACCTGATTGGGCAGCTGATGGAATCCCAAAAGAGGAGCCCAGTAGTGACCTGCAGCGTGTTGTTGAGATCAAAACTCCGGATCAAATTGAGAGGATGCGAGAAACTTGTCGAATTGCAAGAGAGGTTTTGGATGCAGCTGCTCGTGTCATACGACCTGGTATCACGACTGATGAAATTGATCGGGTGGTCCATGATGCTACTATTGCTGCGGGTGGATATCCATCTCCCCTCAATTATCATTTTTTCCCAAAGTCTTGCTGCACGTCAGTCAATGAAGTAATTTGCCATGGGATTCCTGATGCCAGGAAATTAGAGGATGGTGATATCGTCAATGTTGATGTGTCTGTGTTTTACAAGGGTGTCCATGCTGATCTCAATGATACATACTTTGTGGGAAATGTTGATGAAGAGTCTCGACGGCTAGTCCAGTGTACTTATGAGTGCTTGGAAAAAGCAATATCCATTGTAAAACCTGGAGTTAGATTTCGTGAAGTTGGAGAAGTCATTAATCGCCATGCTACGATGGCGGGATTTTCTGTGGCGAAATCATATTGTGGTCATGGTATAGGGGAGCTCTTTCATTGTGCACCAAATATTCCTCACTATGCAAGAAATAAAGCAGTTGGAGTGATGAAAGCTGGACAAACTTTTACGATTGAACCAATGATCAATGCAGGAATTTGGCGTGATCGAATGTGGCCTGACGGGTGGACTGATGTTACCGCAGATGGAAAACGAAGTGCTCAATTTGAGCACACACTTCTGGTGACTGAGACCGGAGTTGAAGTTCTTACAGCACGGTTGCCTTCATCGCCAAAAGTGTACCCTTGGTTAGATGCCTGA

Protein Analysis

403

Amino Acids

44.83

Weight (kDa)

7.14

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C6H2 PF15801 24 - 67 3.1e-14 zf-MYND-like zinc finger, mRNA-binding
Peptidase_M24 PF00557 153 - 381 7.6e-56 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 54
Acc36I ACCTGC 2 cut(s) 361, 426
Acc65I GGTACC 1 cut(s) 349
AccB1I GGYRCC 1 cut(s) 349
AccIII TCCGGA 1 cut(s) 445
AciI CCGC 6 cut(s) 87, 141, 224, 578, 896, 1092
AclWI GGATC 2 cut(s) 12, 456
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 1047
AcuI CTGAAG 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 4 cut(s) 195, 351, 802, 1193
AfiI CCNNNNNNNGG 1 cut(s) 400
AgsI TTSAA 4 cut(s) 121, 262, 1028, 1154
AhdI GACNNNNNGTC 1 cut(s) 791
AjiI CACGTC 1 cut(s) 633
AjnI CCWGG 3 cut(s) 523, 671, 841
AloI GAACNNNNNNTCC 2 cut(s) 1140, 1172
AluBI AGCT 5 cut(s) 180, 383, 506, 943, 1007
AluI AGCT 5 cut(s) 180, 383, 506, 943, 1007
Alw21I GWGCWC 6 cut(s) 73, 182, 945, 958, 1114, 1125
Alw26I GTCTC 3 cut(s) 313, 786, 1136
Alw44I GTGCAC 1 cut(s) 954
AlwI GGATC 2 cut(s) 12, 456
Aor13HI TCCGGA 1 cut(s) 445
AoxI GGCC 3 cut(s) 45, 204, 1067
ApaLI GTGCAC 1 cut(s) 954
ApeKI GCWGC 7 cut(s) 78, 380, 421, 503, 506, 575, 627
ApoI RAATTY 1 cut(s) 1047
AseI ATTAAT 1 cut(s) 876
Asp718I GGTACC 1 cut(s) 349
AspS9I GGNCC 1 cut(s) 556
AsuHPI GGTGA 2 cut(s) 701, 1147
AvaII GGWCC 1 cut(s) 556
AxyI CCTNAGG 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 958
BanI GGYRCC 1 cut(s) 349
BanII GRGCYC 3 cut(s) 182, 408, 945
BauI CACGAG 2 cut(s) 129, 510
Bbv12I GWGCWC 6 cut(s) 73, 182, 945, 958, 1114, 1125
BbvI GCAGC 7 cut(s) 90, 392, 433, 493, 515, 562, 614
BccI CCATC 5 cut(s) 380, 598, 680, 886, 1091
BceAI ACGGC 1 cut(s) 803
BciT130I CCWGG 3 cut(s) 525, 673, 843
BclI TGATCA 1 cut(s) 1035
BcoDI GTCTC 3 cut(s) 313, 786, 1136
BfaI CTAG 2 cut(s) 336, 791
BfmI CTRYAG 1 cut(s) 419
BfuAI ACCTGC 2 cut(s) 361, 426
BisI GCNGC 8 cut(s) 79, 141, 381, 422, 504, 507, 576, 628
BlsI GCNGC 8 cut(s) 80, 142, 382, 423, 505, 508, 577, 629
Bme1390I CCNGG 3 cut(s) 525, 673, 843
Bme18I GGWCC 1 cut(s) 556
BmeRI GACNNNNNGTC 1 cut(s) 791
BmgBI CACGTC 1 cut(s) 633
BmgT120I GGNCC 1 cut(s) 556
BmiI GGNNCC 2 cut(s) 351, 405
BmrFI CCNGG 3 cut(s) 525, 673, 843
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 6 cut(s) 127, 453, 490, 553, 658, 1195
BmuI ACTGGG 1 cut(s) 402
BpmI CTGGAG 1 cut(s) 864
BsaBI GATNNNNATC 1 cut(s) 589
BsaHI GRCGYC 1 cut(s) 51
BsaI GGTCTC 2 cut(s) 313, 1136
BsaJI CCNNGG 2 cut(s) 655, 1196
BsaWI WCCGGW 2 cut(s) 445, 1145
BsaXI ACNNNNNCTCC 2 cut(s) 1140, 1170
Bsc4I CCNNNNNNNGG 1 cut(s) 400
Bse1I ACTGG 2 cut(s) 408, 796
Bse21I CCTNAGG 1 cut(s) 23
Bse8I GATNNNNATC 1 cut(s) 589
BseAI TCCGGA 1 cut(s) 445
BseBI CCWGG 3 cut(s) 525, 673, 843
BseDI CCNNGG 2 cut(s) 655, 1196
BseGI GGATG 3 cut(s) 468, 505, 691
BseJI GATNNNNATC 1 cut(s) 589
BseLI CCNNNNNNNGG 1 cut(s) 400
BseMII CTCAG 3 cut(s) 14, 167, 1131
BseNI ACTGG 2 cut(s) 408, 796
BseRI GAGGAG 1 cut(s) 416
BseSI GKGCMC 1 cut(s) 958
BseXI GCAGC 7 cut(s) 90, 392, 433, 493, 515, 562, 614
BsgI GTGCAG 2 cut(s) 133, 613
BshFI GGCC 3 cut(s) 47, 206, 1069
BshNI GGYRCC 1 cut(s) 349
BsiHKAI GWGCWC 6 cut(s) 73, 182, 945, 958, 1114, 1125
BsiSI CCGG 2 cut(s) 446, 1146
BslFI GGGAC 2 cut(s) 87, 325
BslI CCNNNNNNNGG 1 cut(s) 400
BsmAI GTCTC 3 cut(s) 313, 786, 1136
BsmFI GGGAC 2 cut(s) 87, 325
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 3 cut(s) 47, 206, 1069
Bso31I GGTCTC 2 cut(s) 313, 1136
Bsp1286I GDGCHC 7 cut(s) 73, 182, 408, 945, 958, 1114, 1125
Bsp13I TCCGGA 1 cut(s) 445
Bsp143I GATC 8 cut(s) 4, 39, 435, 448, 547, 739, 1035, 1057
Bsp19I CCATGG 1 cut(s) 655
BspACI CCGC 6 cut(s) 87, 141, 224, 578, 896, 1092
BspANI GGCC 3 cut(s) 47, 206, 1069
BspCNI CTCAG 3 cut(s) 15, 166, 1132
BspEI TCCGGA 1 cut(s) 445
BspLI GGNNCC 2 cut(s) 351, 405
BspMAI CTGCAG 1 cut(s) 423
BspMI ACCTGC 2 cut(s) 361, 426
BspPI GGATC 2 cut(s) 12, 456
BspT107I GGYRCC 1 cut(s) 349
BspTNI GGTCTC 2 cut(s) 313, 1136
BsrI ACTGG 2 cut(s) 408, 796
BssECI CCNNGG 2 cut(s) 655, 1196
BssMI GATC 8 cut(s) 4, 39, 435, 448, 547, 739, 1035, 1057
BssNI GRCGYC 1 cut(s) 51
BssSI CACGAG 2 cut(s) 129, 510
BssT1I CCWWGG 2 cut(s) 655, 1196
Bst2BI CACGAG 2 cut(s) 129, 510
Bst2UI CCWGG 3 cut(s) 525, 673, 843
Bst4CI ACNGT 1 cut(s) 1170
Bst6I CTCTTC 1 cut(s) 771
BstACI GRCGYC 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 182, 248
BstDEI CTNAG 3 cut(s) 23, 153, 1140
BstDSI CCRYGG 1 cut(s) 655
BstF5I GGATG 3 cut(s) 468, 505, 691
BstKTI GATC 8 cut(s) 7, 42, 438, 451, 550, 742, 1038, 1060
BstMAI GTCTC 3 cut(s) 313, 786, 1136
BstMBI GATC 8 cut(s) 4, 39, 435, 448, 547, 739, 1035, 1057
BstMWI GCNNNNNNNGC 5 cut(s) 44, 53, 572, 893, 1180
BstNI CCWGG 3 cut(s) 525, 673, 843
BstSCI CCNGG 3 cut(s) 523, 671, 841
BstSFI CTRYAG 1 cut(s) 419
BstSLI GKGCMC 1 cut(s) 958
BstV1I GCAGC 7 cut(s) 90, 392, 433, 493, 515, 562, 614
BstXI CCANNNNNNTGG 1 cut(s) 112
Bsu36I CCTNAGG 1 cut(s) 23
BsuRI GGCC 3 cut(s) 47, 206, 1069
BtgI CCRYGG 1 cut(s) 655
BtgZI GCGATG 1 cut(s) 1164
BtrI CACGTC 1 cut(s) 633
BtsCI GGATG 3 cut(s) 468, 505, 691
BtsIMutI CAGTG 2 cut(s) 104, 803
BveI ACCTGC 2 cut(s) 361, 426
Cac8I GCNNGC 2 cut(s) 182, 248
Cfr13I GGNCC 1 cut(s) 556
CsiI ACCWGGT 1 cut(s) 523
Csp6I GTAC 4 cut(s) 194, 350, 801, 1192
CviAII CATG 6 cut(s) 43, 560, 656, 734, 884, 929
CviQI GTAC 4 cut(s) 194, 350, 801, 1192
DdeI CTNAG 3 cut(s) 23, 153, 1140
DpnI GATC 8 cut(s) 6, 41, 437, 450, 549, 741, 1037, 1059
DpnII GATC 8 cut(s) 4, 39, 435, 448, 547, 739, 1035, 1057
DraI TTTAAA 1 cut(s) 201
DriI GACNNNNNGTC 1 cut(s) 791
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 771
Eam1105I GACNNNNNGTC 1 cut(s) 791
EarI CTCTTC 1 cut(s) 771
Ecl136II GAGCTC 2 cut(s) 180, 943
Eco130I CCWWGG 2 cut(s) 655, 1196
Eco24I GRGCYC 3 cut(s) 182, 408, 945
Eco31I GGTCTC 2 cut(s) 313, 1136
Eco32I GATATC 2 cut(s) 587, 694
Eco47I GGWCC 1 cut(s) 556
Eco53kI GAGCTC 2 cut(s) 180, 943
Eco57I CTGAAG 1 cut(s) 80
Eco81I CCTNAGG 1 cut(s) 23
EcoICRI GAGCTC 2 cut(s) 180, 943
EcoRII CCWGG 3 cut(s) 523, 671, 841
EcoRV GATATC 2 cut(s) 587, 694
EcoT14I CCWWGG 2 cut(s) 655, 1196
EcoT38I GRGCYC 3 cut(s) 182, 408, 945
ErhI CCWWGG 2 cut(s) 655, 1196
FaeI CATG 6 cut(s) 46, 563, 659, 737, 887, 932
FaqI GGGAC 2 cut(s) 87, 325
FatI CATG 6 cut(s) 42, 559, 655, 733, 883, 928
FauI CCCGC 4 cut(s) 94, 217, 571, 889
FbaI TGATCA 1 cut(s) 1035
Fnu4HI GCNGC 8 cut(s) 79, 141, 381, 422, 504, 507, 576, 628
FokI GGATG 3 cut(s) 475, 512, 698
FriOI GRGCYC 3 cut(s) 182, 408, 945
Fsp4HI GCNGC 8 cut(s) 79, 141, 381, 422, 504, 507, 576, 628
FspBI CTAG 2 cut(s) 336, 791
GluI GCNGC 8 cut(s) 79, 141, 381, 422, 504, 507, 576, 628
GsuI CTGGAG 1 cut(s) 864
HaeIII GGCC 3 cut(s) 47, 206, 1069
HapII CCGG 2 cut(s) 446, 1146
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 6 cut(s) 46, 563, 659, 737, 887, 932
HinfI GANTC 3 cut(s) 390, 661, 779
HpaII CCGG 2 cut(s) 446, 1146
HphI GGTGA 2 cut(s) 701, 1147
Hpy166II GTNNAC 4 cut(s) 801, 956, 1080, 1192
Hpy188I TCNGA 1 cut(s) 285
Hpy188III TCNNGA 8 cut(s) 131, 155, 233, 446, 532, 665, 783, 857
Hpy8I GTNNAC 4 cut(s) 801, 956, 1080, 1192
Hpy99I CGWCG 3 cut(s) 53, 56, 789
HpyAV CCTTC 2 cut(s) 236, 1185
HpyCH4III ACNGT 1 cut(s) 1170
HpyCH4IV ACGT 2 cut(s) 51, 632
HpyCH4V TGCA 9 cut(s) 78, 150, 421, 485, 503, 630, 956, 977, 1043
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 53, 572, 893, 1180
HpyF3I CTNAG 3 cut(s) 23, 153, 1140
HpySE526I ACGT 2 cut(s) 51, 632
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 6 cut(s) 46, 563, 659, 737, 887, 932
Kpn2I TCCGGA 1 cut(s) 445
KpnI GGTACC 1 cut(s) 353
Ksp22I TGATCA 1 cut(s) 1035
Kzo9I GATC 8 cut(s) 4, 39, 435, 448, 547, 739, 1035, 1057
LmnI GCTCC 3 cut(s) 177, 403, 940
Lsp1109I GCAGC 7 cut(s) 90, 392, 433, 493, 515, 562, 614
LweI GCATC 6 cut(s) 127, 453, 490, 553, 658, 1195
MabI ACCWGGT 1 cut(s) 523
MaeI CTAG 2 cut(s) 336, 791
MaeII ACGT 2 cut(s) 51, 632
MaeIII GTNAC 3 cut(s) 413, 1087, 1135
MalI GATC 8 cut(s) 6, 41, 437, 450, 549, 741, 1037, 1059
MboI GATC 8 cut(s) 4, 39, 435, 448, 547, 739, 1035, 1057
MboII GAAGA 4 cut(s) 86, 146, 274, 788
MhlI GDGCHC 7 cut(s) 73, 182, 408, 945, 958, 1114, 1125
MluCI AATT 9 cut(s) 116, 453, 480, 543, 601, 648, 677, 1047, 1115
MlyI GAGTC 1 cut(s) 788
MmeI TCCRAC 2 cut(s) 844, 973
MnlI CCTC 8 cut(s) 18, 138, 394, 453, 484, 608, 676, 978
MroI TCCGGA 1 cut(s) 445
MseI TTAA 3 cut(s) 165, 200, 876
MspA1I CMGCKG 2 cut(s) 383, 506
MspI CCGG 2 cut(s) 446, 1146
MspR9I CCNGG 3 cut(s) 525, 673, 843
Mva1269I GAATGC 1 cut(s) 40
MvaI CCWGG 3 cut(s) 525, 673, 843
MwoI GCNNNNNNNGC 5 cut(s) 44, 53, 572, 893, 1180
NcoI CCATGG 1 cut(s) 655
NdeII GATC 8 cut(s) 4, 39, 435, 448, 547, 739, 1035, 1057
NlaIII CATG 6 cut(s) 46, 563, 659, 737, 887, 932
NlaIV GGNNCC 2 cut(s) 351, 405
NmuCI GTSAC 2 cut(s) 413, 1135
PcsI WCGNNNNNNNCGW 1 cut(s) 517
PctI GAATGC 1 cut(s) 40
PfeI GAWTC 2 cut(s) 390, 661
PflFI GACNNNGTC 1 cut(s) 273
PkrI GCNGC 8 cut(s) 80, 142, 382, 423, 505, 508, 577, 629
PleI GAGTC 1 cut(s) 787
PpsI GAGTC 1 cut(s) 787
PshBI ATTAAT 1 cut(s) 876
Psp124BI GAGCTC 2 cut(s) 182, 945
Psp6I CCWGG 3 cut(s) 523, 671, 841
PspGI CCWGG 3 cut(s) 523, 671, 841
PspN4I GGNNCC 2 cut(s) 351, 405
PspPI GGNCC 1 cut(s) 556
PstI CTGCAG 1 cut(s) 423
PsyI GACNNNGTC 1 cut(s) 273
PvuII CAGCTG 2 cut(s) 383, 506
RsaI GTAC 4 cut(s) 195, 351, 802, 1193
RsaNI GTAC 4 cut(s) 194, 350, 801, 1192
SacI GAGCTC 2 cut(s) 182, 945
SaqAI TTAA 3 cut(s) 165, 200, 876
SatI GCNGC 8 cut(s) 79, 141, 381, 422, 504, 507, 576, 628
Sau3AI GATC 8 cut(s) 4, 39, 435, 448, 547, 739, 1035, 1057
Sau96I GGNCC 1 cut(s) 556
SchI GAGTC 1 cut(s) 788
ScrFI CCNGG 3 cut(s) 525, 673, 843
SduI GDGCHC 7 cut(s) 73, 182, 408, 945, 958, 1114, 1125
SexAI ACCWGGT 1 cut(s) 523
SfaNI GCATC 6 cut(s) 127, 453, 490, 553, 658, 1195
SfcI CTRYAG 1 cut(s) 419
SinI GGWCC 1 cut(s) 556
Sse9I AATT 9 cut(s) 116, 453, 480, 543, 601, 648, 677, 1047, 1115
SsiI CCGC 6 cut(s) 87, 141, 224, 578, 896, 1092
SspI AATATT 2 cut(s) 254, 964
SspMI CTAG 2 cut(s) 336, 791
SstI GAGCTC 2 cut(s) 182, 945
StyD4I CCNGG 3 cut(s) 523, 671, 841
StyI CCWWGG 2 cut(s) 655, 1196
TaaI ACNGT 1 cut(s) 1170
TaiI ACGT 2 cut(s) 54, 635
TaqI TCGA 4 cut(s) 277, 478, 784, 1060
TasI AATT 9 cut(s) 116, 453, 480, 543, 601, 648, 677, 1047, 1115
TatI WGTACW 1 cut(s) 800
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 2 cut(s) 390, 661
Tru1I TTAA 3 cut(s) 165, 200, 876
Tru9I TTAA 3 cut(s) 165, 200, 876
TscAI CASTG 2 cut(s) 104, 803
TseFI GTSAC 2 cut(s) 413, 1135
TseI GCWGC 7 cut(s) 78, 380, 421, 503, 506, 575, 627
Tsp45I GTSAC 2 cut(s) 413, 1135
TspDTI ATGAA 6 cut(s) 555, 657, 789, 938, 1016, 1167
TspRI CASTG 2 cut(s) 104, 803
Tth111I GACNNNGTC 1 cut(s) 273
VneI GTGCAC 1 cut(s) 954
VpaK11BI GGWCC 1 cut(s) 556
VspI ATTAAT 1 cut(s) 876
XapI RAATTY 1 cut(s) 1047
XspI CTAG 2 cut(s) 336, 791
ZraI GACGTC 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.