Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003129

Physical Location & Seq

Genomic Coordinates Forward (+)

42468394 .. 42473708

Gene Structure 5315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG217600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCCGACGTCGCCACCCTCTCGTGTGCTCGTTGCAGCAAACCCGCCAATCTTCAGTGTCCCAAGTGTGTGGAATTGAAGCTTCCTCGTGAAGATGCCGCTTTCTGCACTCAGGATTGTTTTAAGGCTTCGTGGAGCTCACATAAATCGGTACATTTAAAGGCCAAACAGTCTAATGGGGTGGGAAATACAGAGAACGAAGGCTGGGAATATTGCATGAAGAAAGGACAGGGTCGAACTCCGAAACTTCCTTATTTTGATTGGACTGGGACATTGAGACCATATCCTATATCTAGCAAGCGTGTGGTACCTGCTCATATTGATCTACCTGATTGGGCAGCTGATGGAATCCCAAAAGAGGAACCCAGTAGTGACCTGCAGCGTGTTGTTGAGATCAAAACTCCGGATCAAATTGAGAGGATGCGAGAAACTTGTCGAATAGCAAGAGAGGTTTTGGATGCAGCTGCTCGTGTCATACGACCTGGTGTCACGACTGATGAAATTGATCGGGTGGTCCATGATGCTACTATTGCTGCGGGTGCATATCCATCTCCCCTCAATTATCATTTTTTCCCAAAGTCTTGCTGCACGTCAGTCAATGAAGTAATTTGCCATGGGATTCCTGATGCCAGGAAATTAGAGGATGGTGATATCGTCAACGTTGATGTGACTGTGTATTACAAAGGTGTCCATGGTGATCTCAATGATACATACTTTGTGGGAAACGTTGATGAAGAGTCTCGACGGCTAGTCCAGTGTACTTATGAGTGCTTGGAAAAAGCAATATCCATTGTAAAACCTGGAGTTAGATTTCGTGAAGTTGGAGAAGTCATTAATCGCCATGCTACGATGGCGGGATTTTCTGTGGTAATTTGTAACTTGTATTTGGACTTGCACAGTACTTCCAATTTGAAGAATAACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24 zf-C6H2

Protein Analysis

308

Amino Acids

34.39

Weight (kDa)

6.51

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C6H2	PF15801	10 - 53	2.1e-14	zf-MYND-like zinc finger, mRNA-binding
Peptidase_M24	PF00557	139 - 290	1.6e-38	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45240 AT2G45240
fragaria_vesca	FvH4_7g11350 FvH4_7g11370
malus_domestica	MD02G1206000.v1.1 MD07G1118400.v1.1 MD07G1118600.v1.1
prunus_persica	Prupe.2G141300_v2.0.a1
pyrus_communis	pycom02g16990 pycom07g10610
rosa_chinensis	RchiOBHm_Chr1g0349561 RchiOBHm_Chr1g0349651 RchiOBHm_Chr4g0403521 RchiOBHm_Chr7g0223151
rosa_laevigata	RLG00000028538 RLG00000028542
rosa_multiflora	Rmu_sc0001593.1_g000008 Rmu_sc0002495.1_g000024 Rmu_sc0002495.1_g000038 Rmu_sc0006074.1_g000011 Rmu_sc0012293.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305410 Rroxscaffold_4G00305430
rosa_rugosa	Rorug01G0204500 Rorug05G0164500
rosa_samantha	Rh1AG221900 Rh1AG222400 Rh1BG188000 Rh1BG188300 Rh1CG206700 Rh1CG206800 Rh1CG207100 Rh1DG217400 Rh1DG217600
rosa_wichuraiana	Rw1G018860 Rw1G018910 Rw1G018950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
Acc36I	ACCTGC	2 cut(s)	319, 384
Acc65I	GGTACC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	307
AccIII	TCCGGA	1 cut(s)	403
AciI	CCGC	4 cut(s)	45, 99, 536, 854
AclI	AACGTT	2 cut(s)	660, 726
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	4 cut(s)	153, 309, 760, 901
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	2 cut(s)	79, 913
AhdI	GACNNNNNGTC	2 cut(s)	485, 749
AjiI	CACGTC	1 cut(s)	591
AjnI	CCWGG	3 cut(s)	481, 629, 799
AluBI	AGCT	4 cut(s)	82, 138, 341, 464
AluI	AGCT	4 cut(s)	82, 138, 341, 464
Alw21I	GWGCWC	2 cut(s)	31, 140
Alw26I	GTCTC	2 cut(s)	271, 744
AlwI	GGATC	1 cut(s)	414
Aor13HI	TCCGGA	1 cut(s)	403
AoxI	GGCC	2 cut(s)	3, 162
ApeKI	GCWGC	7 cut(s)	36, 338, 379, 461, 464, 533, 585
AseI	ATTAAT	1 cut(s)	834
Asp718I	GGTACC	1 cut(s)	307
AspS9I	GGNCC	1 cut(s)	514
AsuHPI	GGTGA	2 cut(s)	659, 707
AvaII	GGWCC	1 cut(s)	514
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	140
BauI	CACGAG	3 cut(s)	22, 87, 468
Bbv12I	GWGCWC	2 cut(s)	31, 140
BbvI	GCAGC	7 cut(s)	48, 350, 391, 451, 473, 520, 572
BccI	CCATC	4 cut(s)	338, 556, 638, 844
BceAI	ACGGC	1 cut(s)	761
BciT130I	CCWGG	3 cut(s)	483, 631, 801
BcoDI	GTCTC	2 cut(s)	271, 744
BfaI	CTAG	2 cut(s)	294, 749
BfmI	CTRYAG	1 cut(s)	377
BfuAI	ACCTGC	2 cut(s)	319, 384
BisI	GCNGC	8 cut(s)	37, 99, 339, 380, 462, 465, 534, 586
BlsI	GCNGC	8 cut(s)	38, 100, 340, 381, 463, 466, 535, 587
BmcAI	AGTACT	1 cut(s)	901
Bme1390I	CCNGG	3 cut(s)	483, 631, 801
Bme18I	GGWCC	1 cut(s)	514
BmeRI	GACNNNNNGTC	2 cut(s)	485, 749
BmgBI	CACGTC	1 cut(s)	591
BmgT120I	GGNCC	1 cut(s)	514
BmiI	GGNNCC	2 cut(s)	309, 363
BmrFI	CCNGG	3 cut(s)	483, 631, 801
BmrI	ACTGGG	2 cut(s)	276, 360
BmsI	GCATC	5 cut(s)	85, 411, 448, 511, 616
BmuI	ACTGGG	2 cut(s)	276, 360
BpmI	CTGGAG	1 cut(s)	822
BsaHI	GRCGYC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	2 cut(s)	613, 691
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse1I	ACTGG	3 cut(s)	271, 366, 754
BseAI	TCCGGA	1 cut(s)	403
BseBI	CCWGG	3 cut(s)	483, 631, 801
BseDI	CCNNGG	2 cut(s)	613, 691
BseGI	GGATG	3 cut(s)	426, 463, 649
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	3 cut(s)	271, 366, 754
BseXI	GCAGC	7 cut(s)	48, 350, 391, 451, 473, 520, 572
BseYI	CCCAGC	1 cut(s)	204
BsgI	GTGCAG	2 cut(s)	91, 571
BshFI	GGCC	2 cut(s)	5, 164
BshNI	GGYRCC	1 cut(s)	307
BsiHKAI	GWGCWC	2 cut(s)	31, 140
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	2 cut(s)	45, 283
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	2 cut(s)	271, 744
BsmFI	GGGAC	2 cut(s)	45, 283
BsnI	GGCC	2 cut(s)	5, 164
Bso31I	GGTCTC	1 cut(s)	271
Bsp1286I	GDGCHC	2 cut(s)	31, 140
Bsp13I	TCCGGA	1 cut(s)	403
Bsp143I	GATC	5 cut(s)	322, 393, 406, 505, 697
Bsp19I	CCATGG	2 cut(s)	613, 691
BspACI	CCGC	4 cut(s)	45, 99, 536, 854
BspANI	GGCC	2 cut(s)	5, 164
BspCNI	CTCAG	1 cut(s)	124
BspEI	TCCGGA	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	309, 363
BspMAI	CTGCAG	1 cut(s)	381
BspMI	ACCTGC	2 cut(s)	319, 384
BspPI	GGATC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	271
BsrI	ACTGG	3 cut(s)	271, 366, 754
BssECI	CCNNGG	2 cut(s)	613, 691
BssMI	GATC	5 cut(s)	322, 393, 406, 505, 697
BssNI	GRCGYC	1 cut(s)	9
BssSI	CACGAG	3 cut(s)	22, 87, 468
BssT1I	CCWWGG	2 cut(s)	613, 691
Bst2BI	CACGAG	3 cut(s)	22, 87, 468
Bst2UI	CCWGG	3 cut(s)	483, 631, 801
Bst4CI	ACNGT	3 cut(s)	171, 673, 899
Bst6I	CTCTTC	1 cut(s)	729
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	111
BstDSI	CCRYGG	2 cut(s)	613, 691
BstF5I	GGATG	3 cut(s)	426, 463, 649
BstKTI	GATC	5 cut(s)	325, 396, 409, 508, 700
BstMAI	GTCTC	2 cut(s)	271, 744
BstMBI	GATC	5 cut(s)	322, 393, 406, 505, 697
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 530, 539, 851
BstNI	CCWGG	3 cut(s)	483, 631, 801
BstSCI	CCNGG	3 cut(s)	481, 629, 799
BstSFI	CTRYAG	1 cut(s)	377
BstV1I	GCAGC	7 cut(s)	48, 350, 391, 451, 473, 520, 572
BstXI	CCANNNNNNTGG	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	5, 164
BtgI	CCRYGG	2 cut(s)	613, 691
BtrI	CACGTC	1 cut(s)	591
BtsCI	GGATG	3 cut(s)	426, 463, 649
BtsIMutI	CAGTG	2 cut(s)	62, 761
BveI	ACCTGC	2 cut(s)	319, 384
Cac8I	GCNNGC	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	514
CsiI	ACCWGGT	1 cut(s)	481
Csp6I	GTAC	4 cut(s)	152, 308, 759, 900
CviAII	CATG	5 cut(s)	217, 518, 614, 692, 842
CviJI	RGCY	9 cut(s)	5, 82, 128, 138, 164, 204, 341, 464, 748
CviKI_1	RGCY	9 cut(s)	5, 82, 128, 138, 164, 204, 341, 464, 748
CviQI	GTAC	4 cut(s)	152, 308, 759, 900
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	5 cut(s)	324, 395, 408, 507, 699
DpnII	GATC	5 cut(s)	322, 393, 406, 505, 697
DraI	TTTAAA	1 cut(s)	159
DriI	GACNNNNNGTC	2 cut(s)	485, 749
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	729
Eam1105I	GACNNNNNGTC	2 cut(s)	485, 749
EarI	CTCTTC	1 cut(s)	729
Ecl136II	GAGCTC	1 cut(s)	138
Eco130I	CCWWGG	2 cut(s)	613, 691
Eco24I	GRGCYC	1 cut(s)	140
Eco31I	GGTCTC	1 cut(s)	271
Eco32I	GATATC	1 cut(s)	652
Eco47I	GGWCC	1 cut(s)	514
Eco53kI	GAGCTC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	138
EcoRII	CCWGG	3 cut(s)	481, 629, 799
EcoRV	GATATC	1 cut(s)	652
EcoT14I	CCWWGG	2 cut(s)	613, 691
EcoT38I	GRGCYC	1 cut(s)	140
ErhI	CCWWGG	2 cut(s)	613, 691
FaeI	CATG	5 cut(s)	220, 521, 617, 695, 845
FaqI	GGGAC	2 cut(s)	45, 283
FatI	CATG	5 cut(s)	216, 517, 613, 691, 841
FauI	CCCGC	3 cut(s)	52, 529, 847
Fnu4HI	GCNGC	8 cut(s)	37, 99, 339, 380, 462, 465, 534, 586
FokI	GGATG	3 cut(s)	433, 470, 656
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	8 cut(s)	37, 99, 339, 380, 462, 465, 534, 586
FspBI	CTAG	2 cut(s)	294, 749
GluI	GCNGC	8 cut(s)	37, 99, 339, 380, 462, 465, 534, 586
GsaI	CCCAGC	1 cut(s)	208
GsuI	CTGGAG	1 cut(s)	822
HaeIII	GGCC	2 cut(s)	5, 164
HapII	CCGG	1 cut(s)	404
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	5 cut(s)	220, 521, 617, 695, 845
HincII	GTYRAC	1 cut(s)	658
HindII	GTYRAC	1 cut(s)	658
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	3 cut(s)	348, 619, 737
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	2 cut(s)	659, 707
Hpy166II	GTNNAC	2 cut(s)	658, 759
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	7 cut(s)	89, 113, 404, 490, 623, 741, 815
Hpy8I	GTNNAC	2 cut(s)	658, 759
Hpy99I	CGWCG	3 cut(s)	11, 14, 747
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	3 cut(s)	171, 673, 899
HpyCH4IV	ACGT	4 cut(s)	9, 590, 660, 726
HpyCH4V	TGCA	8 cut(s)	36, 108, 216, 379, 461, 542, 588, 895
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 530, 539, 851
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	4 cut(s)	9, 590, 660, 726
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	5 cut(s)	220, 521, 617, 695, 845
Kpn2I	TCCGGA	1 cut(s)	403
KpnI	GGTACC	1 cut(s)	311
Kzo9I	GATC	5 cut(s)	322, 393, 406, 505, 697
LmnI	GCTCC	1 cut(s)	135
Lsp1109I	GCAGC	7 cut(s)	48, 350, 391, 451, 473, 520, 572
LweI	GCATC	5 cut(s)	85, 411, 448, 511, 616
MabI	ACCWGGT	1 cut(s)	481
MaeI	CTAG	2 cut(s)	294, 749
MaeII	ACGT	4 cut(s)	9, 590, 660, 726
MaeIII	GTNAC	4 cut(s)	371, 487, 667, 875
MalI	GATC	5 cut(s)	324, 395, 408, 507, 699
MboI	GATC	5 cut(s)	322, 393, 406, 505, 697
MboII	GAAGA	5 cut(s)	44, 104, 232, 746, 925
MhlI	GDGCHC	2 cut(s)	31, 140
MluCI	AATT	8 cut(s)	74, 411, 501, 559, 606, 635, 870, 907
MlyI	GAGTC	1 cut(s)	746
MmeI	TCCRAC	1 cut(s)	802
MnlI	CCTC	7 cut(s)	29, 96, 352, 411, 442, 566, 634
MroI	TCCGGA	1 cut(s)	403
MseI	TTAA	3 cut(s)	123, 158, 834
MspA1I	CMGCKG	2 cut(s)	341, 464
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	3 cut(s)	483, 631, 801
MvaI	CCWGG	3 cut(s)	483, 631, 801
MwoI	GCNNNNNNNGC	4 cut(s)	11, 530, 539, 851
NcoI	CCATGG	2 cut(s)	613, 691
NdeII	GATC	5 cut(s)	322, 393, 406, 505, 697
NlaIII	CATG	5 cut(s)	220, 521, 617, 695, 845
NlaIV	GGNNCC	2 cut(s)	309, 363
NmuCI	GTSAC	3 cut(s)	371, 487, 667
PcsI	WCGNNNNNNNCGW	1 cut(s)	475
PfeI	GAWTC	2 cut(s)	348, 619
PflFI	GACNNNGTC	1 cut(s)	231
PkrI	GCNGC	8 cut(s)	38, 100, 340, 381, 463, 466, 535, 587
PleI	GAGTC	1 cut(s)	745
PpsI	GAGTC	1 cut(s)	745
PshBI	ATTAAT	1 cut(s)	834
Psp124BI	GAGCTC	1 cut(s)	140
Psp1406I	AACGTT	2 cut(s)	660, 726
Psp6I	CCWGG	3 cut(s)	481, 629, 799
PspFI	CCCAGC	1 cut(s)	204
PspGI	CCWGG	3 cut(s)	481, 629, 799
PspN4I	GGNNCC	2 cut(s)	309, 363
PspPI	GGNCC	1 cut(s)	514
PstI	CTGCAG	1 cut(s)	381
PsyI	GACNNNGTC	1 cut(s)	231
PvuII	CAGCTG	2 cut(s)	341, 464
RsaI	GTAC	4 cut(s)	153, 309, 760, 901
RsaNI	GTAC	4 cut(s)	152, 308, 759, 900
SacI	GAGCTC	1 cut(s)	140
SaqAI	TTAA	3 cut(s)	123, 158, 834
SatI	GCNGC	8 cut(s)	37, 99, 339, 380, 462, 465, 534, 586
Sau3AI	GATC	5 cut(s)	322, 393, 406, 505, 697
Sau96I	GGNCC	1 cut(s)	514
ScaI	AGTACT	1 cut(s)	901
SchI	GAGTC	1 cut(s)	746
ScrFI	CCNGG	3 cut(s)	483, 631, 801
SduI	GDGCHC	2 cut(s)	31, 140
SexAI	ACCWGGT	1 cut(s)	481
SfaNI	GCATC	5 cut(s)	85, 411, 448, 511, 616
SfcI	CTRYAG	1 cut(s)	377
SinI	GGWCC	1 cut(s)	514
Sse9I	AATT	8 cut(s)	74, 411, 501, 559, 606, 635, 870, 907
SsiI	CCGC	4 cut(s)	45, 99, 536, 854
SspI	AATATT	1 cut(s)	212
SspMI	CTAG	2 cut(s)	294, 749
SstI	GAGCTC	1 cut(s)	140
StyD4I	CCNGG	3 cut(s)	481, 629, 799
StyI	CCWWGG	2 cut(s)	613, 691
TaaI	ACNGT	3 cut(s)	171, 673, 899
TaiI	ACGT	4 cut(s)	12, 593, 663, 729
TaqI	TCGA	3 cut(s)	235, 436, 742
TasI	AATT	8 cut(s)	74, 411, 501, 559, 606, 635, 870, 907
TatI	WGTACW	2 cut(s)	758, 899
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	348, 619
Tru1I	TTAA	3 cut(s)	123, 158, 834
Tru9I	TTAA	3 cut(s)	123, 158, 834
TscAI	CASTG	2 cut(s)	62, 761
TseFI	GTSAC	3 cut(s)	371, 487, 667
TseI	GCWGC	7 cut(s)	36, 338, 379, 461, 464, 533, 585
Tsp45I	GTSAC	3 cut(s)	371, 487, 667
TspDTI	ATGAA	4 cut(s)	233, 513, 615, 747
TspRI	CASTG	2 cut(s)	62, 761
Tth111I	GACNNNGTC	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	514
VspI	ATTAAT	1 cut(s)	834
XspI	CTAG	2 cut(s)	294, 749
ZraI	GACGTC	1 cut(s)	10
ZrmI	AGTACT	1 cut(s)	901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.