Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003129

Physical Location & Seq

Genomic Coordinates Forward (+)

15219766 .. 15220989

Gene Structure 1224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0164500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGTCAAATAATGGTGAGCAGATCCTATCTTCAATTCCCAGCTGGTTGTTTAACCTTACCAGCCTCATAAAACTGAATCTAAGTCGGACTTCTTTCGGTGGTTCCATTAATTGGGAATTGGCAAGCTTCAAAGATCTGGAAGACCTCGACTTATCTAGTAGTAGCTTTGAAGGTCATATTCCCAAACTCATGGGGAATTCCACCAAGCTAAAGATCTTAAATCTTTCACACAGCAAATTTGTGGGTGCAATTCCAGAGTGTTTCCTTGGTAGTTCTGGCTGTACAAATGATAAACTAGAGCTCCTAGATCTGTCTTTTAATATGTTGGAAAGCAAATTGCCTGTTTCCTTGGGGATGCTGCATAATTTGCAGTATCTGAACCTTCAGTCCAACTCTTTTTGGGGAAAAATTCCAGAGTCTATAGGAAACTTGTCATCCTTGGAAACTCTAAACCTTAATTCAAACTCTTTTTGGGGCACAATTCCAGATTCTATAGGAAACTTGTCATCCTTGAAAACTCTAAACCTCAAGTATAATCAAATGAATGGGTCCGTTCCTGAAAGTCTGGGACAACTTTCTCAGCTAGTTCAGCTAGATCTATCTGAGAATTCCTGGGCAGGTAGTCTATTGGAATCCCATTTCAAAAATCTCACCAGCTTAGAGTCTTTTGCAGTAACCACAGATCAACCTATGTCTCTCATTTTCAATTTGTCTTATGAGTGGGTTGCTCCTTTCAAGCTCTACACAATGGACATTAGGAATAGTAGCATAGGTCCTTCATTTCCTGCTTGGCTTCAGTCCCAAACTGAACTATTGGCTGTCACCCTTTCAAATACCAACATCTCAGATTCCATACCAGAGGAATGGTTCTTGAAGTTGTCTTCCCAAATCGAATACTTGGATTTATCTTATAACCAAATCCGCGGAAGGCTTCCATTGCTACTGAAATGTCCAAATCTAAATCATATAGATTTGAGTCATAACCAATTTGAAGGTCCAGTTCCATTTTTTTCCCCTAATGTCTCCATGCCCAATCTCGAAAGCAATTTACTTTCGGGGACAATTCCCTCGAATTTGGACCAGATGATGCCCAACTTGAGAGAATTGTATCTCTCTGAGAATAAAGTGAATGGTACTATTCCAGCCTCTATGTGCAACATGACAAACTTGGCAATTCTTACATTGAGGAGAAATCAGTTGTCTGGAGAATTCCCTCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24 zf-C6H2

Protein Analysis

407

Amino Acids

45.23

Weight (kDa)

4.91

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	111 - 269	4.8e-17	Leucine-rich repeat region
LRR_8	PF13855	146 - 203	8.5e-10	Leucine rich repeat
LRR_4	PF12799	296 - 329	4.1e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	345 - 400	1e-05	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45240 AT2G45240
fragaria_vesca	FvH4_7g11350 FvH4_7g11370
malus_domestica	MD02G1206000.v1.1 MD07G1118400.v1.1 MD07G1118600.v1.1
prunus_persica	Prupe.2G141300_v2.0.a1
pyrus_communis	pycom02g16990 pycom07g10610
rosa_chinensis	RchiOBHm_Chr1g0349561 RchiOBHm_Chr1g0349651 RchiOBHm_Chr4g0403521 RchiOBHm_Chr7g0223151
rosa_laevigata	RLG00000028538 RLG00000028542
rosa_multiflora	Rmu_sc0001593.1_g000008 Rmu_sc0002495.1_g000024 Rmu_sc0002495.1_g000038 Rmu_sc0006074.1_g000011 Rmu_sc0012293.1_g000003
rosa_roxburghii	Rroxscaffold_4G00305410 Rroxscaffold_4G00305430
rosa_rugosa	Rorug01G0204500 Rorug05G0164500
rosa_samantha	Rh1AG221900 Rh1AG222400 Rh1BG188000 Rh1BG188300 Rh1CG206700 Rh1CG206800 Rh1CG207100 Rh1DG217400 Rh1DG217600
rosa_wichuraiana	Rw1G018860 Rw1G018910 Rw1G018950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	912
Acc36I	ACCTGC	1 cut(s)	608
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccII	CGCG	1 cut(s)	924
AciI	CCGC	2 cut(s)	922, 924
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	6 cut(s)	196, 236, 408, 607, 1072, 1208
AcuI	CTGAAG	2 cut(s)	368, 779
AfaI	GTAC	2 cut(s)	283, 1135
AfiI	CCNNNNNNNGG	1 cut(s)	111
AjnI	CCWGG	1 cut(s)	611
AloI	GAACNNNNNNTCC	2 cut(s)	371, 403
AluBI	AGCT	9 cut(s)	42, 126, 165, 208, 301, 583, 592, 657, 739
AluI	AGCT	9 cut(s)	42, 126, 165, 208, 301, 583, 592, 657, 739
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	2 cut(s)	699, 1027
AlwI	GGATC	1 cut(s)	16
AlwNI	CAGNNNCTG	1 cut(s)	376
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	6 cut(s)	196, 236, 408, 607, 1072, 1208
AseI	ATTAAT	1 cut(s)	108
AspS9I	GGNCC	4 cut(s)	549, 773, 995, 1078
AsuHPI	GGTGA	3 cut(s)	26, 643, 814
AvaII	GGWCC	4 cut(s)	549, 773, 995, 1078
BaeGI	GKGCMC	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	303
BbsI	GAAGAC	2 cut(s)	147, 873
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	345
BciT130I	CCWGG	1 cut(s)	613
BcoDI	GTCTC	2 cut(s)	699, 1027
BfaI	CTAG	5 cut(s)	156, 296, 305, 584, 593
BfmI	CTRYAG	2 cut(s)	420, 492
BfuAI	ACCTGC	1 cut(s)	608
BglII	AGATCT	4 cut(s)	133, 213, 307, 595
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
Bme1390I	CCNGG	1 cut(s)	613
Bme18I	GGWCC	4 cut(s)	549, 773, 995, 1078
BmgT120I	GGNCC	4 cut(s)	549, 773, 995, 1078
BmiI	GGNNCC	2 cut(s)	103, 550
BmrFI	CCNGG	1 cut(s)	613
BmsI	GCATC	2 cut(s)	345, 1077
BpiI	GAAGAC	2 cut(s)	147, 873
BpmI	CTGGAG	1 cut(s)	1224
BpuEI	CTTGAG	3 cut(s)	512, 1117, 1200
BsaJI	CCNNGG	5 cut(s)	265, 348, 438, 612, 922
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	998
Bse3DI	GCAATG	1 cut(s)	935
BseBI	CCWGG	1 cut(s)	613
BseDI	CCNNGG	5 cut(s)	265, 348, 438, 612, 922
BseGI	GGATG	3 cut(s)	360, 434, 506
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	935
BseMII	CTCAG	4 cut(s)	593, 594, 858, 1107
BseNI	ACTGG	1 cut(s)	998
BseRI	GAGGAG	1 cut(s)	1201
BseSI	GKGCMC	1 cut(s)	479
BseXI	GCAGC	1 cut(s)	345
BseYI	CCCAGC	1 cut(s)	38
Bsh1236I	CGCG	1 cut(s)	924
BsiHKAI	GWGCWC	1 cut(s)	303
BslFI	GGGAC	3 cut(s)	582, 784, 1072
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	2 cut(s)	699, 1027
BsmFI	GGGAC	3 cut(s)	582, 784, 1072
Bsp1286I	GDGCHC	2 cut(s)	303, 479
Bsp1407I	TGTACA	1 cut(s)	281
Bsp143I	GATC	6 cut(s)	21, 133, 213, 307, 595, 682
BspACI	CCGC	2 cut(s)	922, 924
BspCNI	CTCAG	4 cut(s)	592, 595, 857, 1108
BspFNI	CGCG	1 cut(s)	924
BspLI	GGNNCC	2 cut(s)	103, 550
BspMI	ACCTGC	1 cut(s)	608
BspPI	GGATC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	935
BsrGI	TGTACA	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	998
BssECI	CCNNGG	5 cut(s)	265, 348, 438, 612, 922
BssMI	GATC	6 cut(s)	21, 133, 213, 307, 595, 682
BssT1I	CCWWGG	3 cut(s)	265, 348, 438
Bst2UI	CCWGG	1 cut(s)	613
BstAPI	GCANNNNNTGC	1 cut(s)	367
BstAUI	TGTACA	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	6 cut(s)	80, 579, 603, 658, 844, 1116
BstDSI	CCRYGG	1 cut(s)	922
BstF5I	GGATG	3 cut(s)	360, 434, 506
BstFNI	CGCG	1 cut(s)	924
BstKTI	GATC	6 cut(s)	24, 136, 216, 310, 598, 685
BstMAI	GTCTC	2 cut(s)	699, 1027
BstMBI	GATC	6 cut(s)	21, 133, 213, 307, 595, 682
BstMWI	GCNNNNNNNGC	3 cut(s)	367, 589, 937
BstNI	CCWGG	1 cut(s)	613
BstSCI	CCNGG	1 cut(s)	611
BstSFI	CTRYAG	2 cut(s)	420, 492
BstSLI	GKGCMC	1 cut(s)	479
BstUI	CGCG	1 cut(s)	924
BstV1I	GCAGC	1 cut(s)	345
BstV2I	GAAGAC	2 cut(s)	147, 873
BstX2I	RGATCY	5 cut(s)	21, 133, 213, 307, 595
BstXI	CCANNNNNNTGG	2 cut(s)	190, 864
BstYI	RGATCY	5 cut(s)	21, 133, 213, 307, 595
BtgI	CCRYGG	1 cut(s)	922
BtsCI	GGATG	3 cut(s)	360, 434, 506
BveI	ACCTGC	1 cut(s)	608
Cac8I	GCNNGC	1 cut(s)	124
CaiI	CAGNNNCTG	1 cut(s)	376
Cfr13I	GGNCC	4 cut(s)	549, 773, 995, 1078
Cfr42I	CCGCGG	1 cut(s)	925
Csp6I	GTAC	2 cut(s)	282, 1134
CviAII	CATG	3 cut(s)	190, 1027, 1159
CviQI	GTAC	2 cut(s)	282, 1134
DdeI	CTNAG	6 cut(s)	80, 579, 603, 658, 844, 1116
DpnI	GATC	6 cut(s)	23, 135, 215, 309, 597, 684
DpnII	GATC	6 cut(s)	21, 133, 213, 307, 595, 682
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	3 cut(s)	265, 348, 438
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	4 cut(s)	549, 773, 995, 1078
Eco53kI	GAGCTC	1 cut(s)	301
Eco57I	CTGAAG	2 cut(s)	368, 779
EcoICRI	GAGCTC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	773
EcoRI	GAATTC	3 cut(s)	196, 607, 1208
EcoRII	CCWGG	1 cut(s)	611
EcoT14I	CCWWGG	3 cut(s)	265, 348, 438
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	3 cut(s)	265, 348, 438
FaeI	CATG	3 cut(s)	193, 1030, 1162
FalI	AAGNNNNNCTT	2 cut(s)	73, 105
FaqI	GGGAC	3 cut(s)	582, 784, 1072
FatI	CATG	3 cut(s)	189, 1026, 1158
Fnu4HI	GCNGC	1 cut(s)	359
FokI	GGATG	3 cut(s)	367, 421, 493
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	1 cut(s)	359
FspBI	CTAG	5 cut(s)	156, 296, 305, 584, 593
GluI	GCNGC	1 cut(s)	359
GsaI	CCCAGC	1 cut(s)	42
GsuI	CTGGAG	1 cut(s)	1224
Hin1II	CATG	3 cut(s)	193, 1030, 1162
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	7 cut(s)	76, 416, 488, 632, 662, 848, 976
HphI	GGTGA	3 cut(s)	26, 643, 814
Hpy188I	TCNGA	5 cut(s)	87, 378, 604, 847, 1117
Hpy188III	TCNNGA	8 cut(s)	137, 254, 413, 485, 557, 871, 1037, 1203
HpyAV	CCTTC	5 cut(s)	164, 392, 786, 921, 986
HpyCH4V	TGCA	5 cut(s)	248, 361, 370, 671, 1155
HpyF10VI	GCNNNNNNNGC	3 cut(s)	367, 589, 937
HpyF3I	CTNAG	6 cut(s)	80, 579, 603, 658, 844, 1116
Hsp92II	CATG	3 cut(s)	193, 1030, 1162
KspI	CCGCGG	1 cut(s)	925
Kzo9I	GATC	6 cut(s)	21, 133, 213, 307, 595, 682
LmnI	GCTCC	2 cut(s)	306, 733
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	2 cut(s)	345, 1077
MaeI	CTAG	5 cut(s)	156, 296, 305, 584, 593
MaeIII	GTNAC	2 cut(s)	673, 820
MalI	GATC	6 cut(s)	23, 135, 215, 309, 597, 684
MboI	GATC	6 cut(s)	21, 133, 213, 307, 595, 682
MboII	GAAGA	3 cut(s)	21, 152, 873
MflI	RGATCY	5 cut(s)	21, 133, 213, 307, 595
MhlI	GDGCHC	2 cut(s)	303, 479
MlyI	GAGTC	3 cut(s)	425, 671, 985
MmeI	TCCRAC	3 cut(s)	65, 306, 414
MnlI	CCTC	8 cut(s)	74, 155, 536, 853, 1078, 1156, 1179, 1224
MseI	TTAA	5 cut(s)	51, 108, 218, 318, 456
MspA1I	CMGCKG	2 cut(s)	42, 924
MspR9I	CCNGG	1 cut(s)	613
MvaI	CCWGG	1 cut(s)	613
MvnI	CGCG	1 cut(s)	924
MwoI	GCNNNNNNNGC	3 cut(s)	367, 589, 937
NdeII	GATC	6 cut(s)	21, 133, 213, 307, 595, 682
NlaIII	CATG	3 cut(s)	193, 1030, 1162
NlaIV	GGNNCC	2 cut(s)	103, 550
NmuCI	GTSAC	1 cut(s)	820
PfeI	GAWTC	4 cut(s)	76, 488, 632, 848
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	360
PleI	GAGTC	3 cut(s)	424, 670, 984
PpsI	GAGTC	3 cut(s)	424, 670, 984
PpuMI	RGGWCCY	1 cut(s)	773
PshBI	ATTAAT	1 cut(s)	108
PsiI	TTATAA	1 cut(s)	912
Psp124BI	GAGCTC	1 cut(s)	303
Psp5II	RGGWCCY	1 cut(s)	773
Psp6I	CCWGG	1 cut(s)	611
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	611
PspN4I	GGNNCC	2 cut(s)	103, 550
PspPI	GGNCC	4 cut(s)	549, 773, 995, 1078
PspPPI	RGGWCCY	1 cut(s)	773
PstNI	CAGNNNCTG	1 cut(s)	376
PsuI	RGATCY	5 cut(s)	21, 133, 213, 307, 595
PvuII	CAGCTG	1 cut(s)	42
RsaI	GTAC	2 cut(s)	283, 1135
RsaNI	GTAC	2 cut(s)	282, 1134
SacI	GAGCTC	1 cut(s)	303
SacII	CCGCGG	1 cut(s)	925
SaqAI	TTAA	5 cut(s)	51, 108, 218, 318, 456
SatI	GCNGC	1 cut(s)	359
Sau3AI	GATC	6 cut(s)	21, 133, 213, 307, 595, 682
Sau96I	GGNCC	4 cut(s)	549, 773, 995, 1078
SchI	GAGTC	3 cut(s)	425, 671, 985
ScrFI	CCNGG	1 cut(s)	613
SduI	GDGCHC	2 cut(s)	303, 479
SfaNI	GCATC	2 cut(s)	345, 1077
SfcI	CTRYAG	2 cut(s)	420, 492
Sfr303I	CCGCGG	1 cut(s)	925
SgrBI	CCGCGG	1 cut(s)	925
SinI	GGWCC	4 cut(s)	549, 773, 995, 1078
SmlI	CTYRAG	3 cut(s)	527, 1096, 1215
SmoI	CTYRAG	3 cut(s)	527, 1096, 1215
SsiI	CCGC	2 cut(s)	922, 924
SspMI	CTAG	5 cut(s)	156, 296, 305, 584, 593
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	611
StyI	CCWWGG	3 cut(s)	265, 348, 438
TaqI	TCGA	4 cut(s)	147, 891, 1038, 1070
TatI	WGTACW	1 cut(s)	281
TfiI	GAWTC	4 cut(s)	76, 488, 632, 848
Tru1I	TTAA	5 cut(s)	51, 108, 218, 318, 456
Tru9I	TTAA	5 cut(s)	51, 108, 218, 318, 456
TseFI	GTSAC	1 cut(s)	820
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	820
TspDTI	ATGAA	2 cut(s)	557, 768
TspGWI	ACGGA	1 cut(s)	541
Van91I	CCANNNNNTGG	1 cut(s)	111
VpaK11BI	GGWCC	4 cut(s)	549, 773, 995, 1078
VspI	ATTAAT	1 cut(s)	108
XapI	RAATTY	6 cut(s)	196, 236, 408, 607, 1072, 1208
XspI	CTAG	5 cut(s)	156, 296, 305, 584, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.