FvH4_7g12870

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002871
Physical Location & Seq
Forward (+)
11629964 .. 11630950
987 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12870.t1

Sequence Viewer

Length: 510 bp
ATGGTGTATATATATCATTTTTTTTTATTCAAACCCGAAGTAAAAGGTAGCAAACCCAAAACTGTGATCGGTTCTTGCAGCAGAAGAAGAAAGGATGAAGACACTCATTGTCCAGGTTTCTACAAGTGTTTGGATGAGTCTGTTCTTCACAGTGGGAAGCTTCAAATCCCCCGAGAGTTCTGCTGGAATTCTGATGGAGTGGTGCCTCAGCAGTGCCGTCTTGAGACGATGTCTGGAAGTTGGAATGTGGATGTGAAAAGGATTGGGAGAGAAATCTTCTTGGAAGAGGGTTGGGAAGAATTTGTTGTTGGAAACTCTTTGAAGCTAGGTGAATATGTGACTCTGCATTACTATGGACATGCCAAGTTCTTTGTTGAAATCTATGGACACAATCACTGTGAAAGGTCAAAGGCCAGCAAAACTGACAGGTTTCTTGAAGATGAAGATGAAGATGATGTTATTATTATTGACTCTGATTCTGATTCAGATGATGTTCTCATGTGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

170

Amino Acids

19.76

Weight (kDa)

5.14

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 44 - 129 3.6e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 202
AcsI RAATTY 2 cut(s) 187, 299
AgsI TTSAA 5 cut(s) 31, 164, 322, 377, 437
AjnI CCWGG 1 cut(s) 112
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AluBI AGCT 2 cut(s) 160, 325
AluI AGCT 2 cut(s) 160, 325
Alw26I GTCTC 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 171
AoxI GGCC 1 cut(s) 411
ApeKI GCWGC 1 cut(s) 78
ApoI RAATTY 2 cut(s) 187, 299
AsuHPI GGTGA 1 cut(s) 341
AvaI CYCGRG 1 cut(s) 171
BanI GGYRCC 1 cut(s) 202
BbsI GAAGAC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 90
BccI CCATC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 201
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BciT130I CCWGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 1 cut(s) 326
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 171
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 114
BseGI GGATG 3 cut(s) 100, 139, 256
BseMII CTCAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 90
BshFI GGCC 1 cut(s) 413
BshNI GGYRCC 1 cut(s) 202
BsiHKCI CYCGRG 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 218
BsmBI CGTCTC 1 cut(s) 218
BsnI GGCC 1 cut(s) 413
BsoBI CYCGRG 1 cut(s) 171
Bsp143I GATC 1 cut(s) 66
BspANI GGCC 1 cut(s) 413
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 202
BssMI GATC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 3 cut(s) 64, 152, 398
Bst6I CTCTTC 1 cut(s) 279
BstC8I GCNNGC 1 cut(s) 415
BstDEI CTNAG 1 cut(s) 207
BstF5I GGATG 3 cut(s) 100, 139, 256
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 1 cut(s) 66
BstNI CCWGG 1 cut(s) 114
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 413
BtsCI GGATG 3 cut(s) 100, 139, 256
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 3 cut(s) 157, 218, 394
Cac8I GCNNGC 1 cut(s) 415
CviAII CATG 2 cut(s) 359, 499
CviJI RGCY 3 cut(s) 160, 325, 413
CviKI_1 RGCY 3 cut(s) 160, 325, 413
DdeI CTNAG 1 cut(s) 207
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 171
EcoRI GAATTC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 112
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 2 cut(s) 362, 502
FaiI YATR 8 cut(s) 9, 11, 13, 336, 354, 360, 384, 500
FatI CATG 2 cut(s) 358, 498
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 3 cut(s) 107, 146, 263
Fsp4HI GCNGC 1 cut(s) 79
FspBI CTAG 1 cut(s) 326
GluI GCNGC 1 cut(s) 79
HaeIII GGCC 1 cut(s) 413
Hin1II CATG 2 cut(s) 362, 502
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 5 cut(s) 137, 340, 470, 476, 482
HphI GGTGA 1 cut(s) 341
Hpy188I TCNGA 5 cut(s) 193, 475, 481, 487, 509
Hpy188III TCNNGA 3 cut(s) 221, 234, 434
HpyCH4III ACNGT 3 cut(s) 64, 152, 398
HpyCH4V TGCA 2 cut(s) 78, 346
HpyF3I CTNAG 1 cut(s) 207
Hsp92II CATG 2 cut(s) 362, 502
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 6 cut(s) 99, 126, 169, 219, 412, 427
Lsp1109I GCAGC 1 cut(s) 90
MaeI CTAG 1 cut(s) 326
MaeIII GTNAC 1 cut(s) 337
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MluCI AATT 2 cut(s) 187, 299
MlyI GAGTC 3 cut(s) 146, 334, 464
MmeI TCCRAC 2 cut(s) 221, 289
MnlI CCTC 2 cut(s) 216, 280
MslI CAYNNNNRTG 1 cut(s) 351
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
NdeII GATC 1 cut(s) 66
NlaIII CATG 2 cut(s) 362, 502
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 337
NspI RCATGY 1 cut(s) 362
PfeI GAWTC 2 cut(s) 476, 482
PflFI GACNNNGTC 1 cut(s) 229
PkrI GCNGC 1 cut(s) 80
PleI GAGTC 3 cut(s) 145, 334, 464
PpsI GAGTC 3 cut(s) 145, 334, 464
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 204
PsyI GACNNNGTC 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 351
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 1 cut(s) 66
SchI GAGTC 3 cut(s) 146, 334, 464
ScrFI CCNGG 1 cut(s) 114
SetI ASST 7 cut(s) 49, 118, 162, 327, 331, 407, 431
SmiMI CAYNNNNRTG 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 2 cut(s) 187, 299
SspMI CTAG 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 3 cut(s) 64, 152, 398
TasI AATT 2 cut(s) 187, 299
TfiI GAWTC 2 cut(s) 476, 482
TscAI CASTG 3 cut(s) 157, 218, 401
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 3 cut(s) 111, 456, 462
TspRI CASTG 3 cut(s) 157, 218, 401
Tth111I GACNNNGTC 1 cut(s) 229
XapI RAATTY 2 cut(s) 187, 299
XceI RCATGY 1 cut(s) 362
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.