Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002871

Physical Location & Seq

Genomic Coordinates Forward (+)

45097079 .. 45099289

Gene Structure 2211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57770

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTATCATTTCCTCCTTTTTGTTGGTTCTTGGTATATAACTATATATTGCTCTGCTGGTTTTCTAGGCTTTTATACTTTCATTTTCTTGTTGAGCCTTGCTGTTTCCTGCGCCCAAATGAGCAAAGCTTATTCACCCCCAAAGAGAAGAGGTAGCCAAGCCAACTCTGTGATGGGTTCTTGCAGCAGAAGAAGAGAGAATGAAGACTCTAAATTTCCAGGCTTTTACAAGTGTGTTGATTACTCTGTTCTTCAAAAAGGGAAGCTTAAAATCCCCCAAGATTTTTCTGAGAAGTTTGAAGTAAAGGTACCTCATCAGTGCCATCTTCAAACTTTTTCTGGATCTTGGCGTGTTGATTTGAAGAGGATTAGTGGAGAGTTCTTCTTCAAAAAGGGTTGGAGGGAATTTGTAGTTGGAAATCGTTTGAACCTCGGTGAATATGTTGTCTTTCATTACTTTGGACATGCAAAGTTCGATGTTGAGATATATGGACACAATCGCTGCAGTAAGAAAAGTGACAGGCTTCATGACGTTACAATTGTTGACTCTGATTCTGATTGTGAACCGCAAAACACTGAAATTAGCTTGGAGTCTGAAATTGAGTGTGCTAGCGAATTGGGTCGTCGAACACATTTTTCAAGGAGAGGTAGAGCTAGTAACCGAGCCACCATAAGCCGTTCTGGAAATCCTTGCTTCAGTGTCCAGATGTGCCAAACTCATGTGACCAAGGGACCATTGCTCACACCAAGGAGCTTCATGAGGAACATCTACAAGCCAAAGAAAGTGGAGCTTCAAGTTGGAAACATGTCCTGGGATGTGAACTGGATCCATCTTTATCAGAGTTCTAGTAGGTTCAGTGGAGGTTGGCTACAGTTTGTGAAACAGAATGGGTTGCAAGAGGGAGATATCTGTGACTTTGAGCTGATTTCAAAGACATTTGAGGTTGCAGTGATGAAGGTTTCGATTAGGAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

325

Amino Acids

37.47

Weight (kDa)

9.29

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	81 - 162	1.1e-11	B3 DNA binding domain
B3	PF02362	234 - 318	2.3e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002871)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12870 FvH4_7g12880
rosa_chinensis	RchiOBHm_Chr1g0351951 RchiOBHm_Chr2g0089651 RchiOBHm_Chr2g0123231 RchiOBHm_Chr4g0439191
rosa_laevigata	RLG00000006289 RLG00000016048 RLG00000028372
rosa_multiflora	Rmu_sc0000665.1_g000025 Rmu_sc0002236.1_g000010 Rmu_sc0007728.1_g000009
rosa_roxburghii	Rroxscaffold_2G00151690 Rroxscaffold_4G00303430 Rroxscaffold_5G00380180
rosa_rugosa	Rorug01G0223100 Rorug02G0002200 Rorug02G0002300 Rorug02G0002400 Rorug04G0316500.1 Rorug04G0316600 Rorug04G0316700 Rorug04G0316800 Rorug04G0316800 Rorug04G0316900
rosa_samantha	Rh1AG237100 Rh1BG207300 Rh1CG221500 Rh1DG234300 Rh2AG047700 Rh2BG046300 Rh2CG048300 Rh2DG047700 Rh4AG367400 Rh4BG379000 Rh4CG393400 Rh4DG373600
rosa_wichuraiana	Rw1G020620 Rw2G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	307
AciI	CCGC	1 cut(s)	566
AclWI	GGATC	3 cut(s)	349, 820, 833
AcsI	RAATTY	2 cut(s)	212, 404
AcuI	CTGAAG	1 cut(s)	679
AfaI	GTAC	1 cut(s)	309
AflIII	ACRYGT	1 cut(s)	804
AgsI	TTSAA	9 cut(s)	254, 299, 329, 361, 388, 427, 639, 794, 930
AjnI	CCWGG	2 cut(s)	217, 809
AjuI	GAANNNNNNNTTGG	2 cut(s)	396, 428
AluBI	AGCT	7 cut(s)	128, 265, 585, 653, 753, 790, 922
AluI	AGCT	7 cut(s)	128, 265, 585, 653, 753, 790, 922
AlwI	GGATC	3 cut(s)	349, 820, 833
ApeKI	GCWGC	2 cut(s)	183, 501
ApoI	RAATTY	2 cut(s)	212, 404
Asp718I	GGTACC	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	731
AsuHPI	GGTGA	2 cut(s)	126, 446
AsuNHI	GCTAGC	1 cut(s)	608
AvaII	GGWCC	1 cut(s)	731
BamHI	GGATCC	1 cut(s)	825
BanI	GGYRCC	1 cut(s)	307
BarI	GAAGNNNNNNTAC	2 cut(s)	291, 323
BbsI	GAAGAC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	195, 488
BccI	CCATC	3 cut(s)	166, 330, 837
BceAI	ACGGC	1 cut(s)	660
BciT130I	CCWGG	2 cut(s)	219, 811
BfaI	CTAG	4 cut(s)	65, 609, 654, 846
BfmI	CTRYAG	2 cut(s)	502, 869
BisI	GCNGC	2 cut(s)	184, 502
BlsI	GCNGC	2 cut(s)	185, 503
Bme1390I	CCNGG	2 cut(s)	219, 811
Bme18I	GGWCC	1 cut(s)	731
BmgT120I	GGNCC	1 cut(s)	731
BmiI	GGNNCC	3 cut(s)	309, 732, 827
BmrFI	CCNGG	2 cut(s)	219, 811
BmtI	GCTAGC	1 cut(s)	612
BpiI	GAAGAC	1 cut(s)	210
BsaJI	CCNNGG	4 cut(s)	430, 726, 746, 810
Bse1I	ACTGG	1 cut(s)	827
Bse3DI	GCAATG	1 cut(s)	734
BseBI	CCWGG	2 cut(s)	219, 811
BseDI	CCNNGG	4 cut(s)	430, 726, 746, 810
BseGI	GGATG	1 cut(s)	820
BseMI	GCAATG	1 cut(s)	734
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	827
BseXI	GCAGC	2 cut(s)	195, 488
BshNI	GGYRCC	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	744
BsmFI	GGGAC	1 cut(s)	744
Bsp143I	GATC	2 cut(s)	341, 825
BspACI	CCGC	1 cut(s)	566
BspCNI	CTCAG	1 cut(s)	280
BspHI	TCATGA	2 cut(s)	526, 756
BspLI	GGNNCC	3 cut(s)	309, 732, 827
BspMAI	CTGCAG	1 cut(s)	506
BspOI	GCTAGC	1 cut(s)	612
BspPI	GGATC	3 cut(s)	349, 820, 833
BspT107I	GGYRCC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	734
BsrI	ACTGG	1 cut(s)	827
BssECI	CCNNGG	4 cut(s)	430, 726, 746, 810
BssMI	GATC	2 cut(s)	341, 825
BssT1I	CCWWGG	2 cut(s)	726, 746
Bst2UI	CCWGG	2 cut(s)	219, 811
Bst4CI	ACNGT	1 cut(s)	873
Bst6I	CTCTTC	3 cut(s)	142, 187, 356
BstC8I	GCNNGC	1 cut(s)	610
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	820
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	2 cut(s)	344, 828
BstMBI	GATC	2 cut(s)	341, 825
BstNI	CCWGG	2 cut(s)	219, 811
BstNSI	RCATGY	2 cut(s)	467, 808
BstSCI	CCNGG	2 cut(s)	217, 809
BstSFI	CTRYAG	2 cut(s)	502, 869
BstV1I	GCAGC	2 cut(s)	195, 488
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	2 cut(s)	341, 825
BstYI	RGATCY	2 cut(s)	341, 825
BtsCI	GGATG	1 cut(s)	820
BtsI	GCAGTG	1 cut(s)	954
BtsIMutI	CAGTG	5 cut(s)	323, 573, 703, 862, 954
Cac8I	GCNNGC	1 cut(s)	610
CciI	TCATGA	2 cut(s)	526, 756
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	731
Csp6I	GTAC	1 cut(s)	308
CspCI	CAANNNNNGTGG	2 cut(s)	765, 800
CviAII	CATG	5 cut(s)	464, 527, 719, 757, 805
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	2 cut(s)	343, 827
DpnII	GATC	2 cut(s)	341, 825
Eam1104I	CTCTTC	3 cut(s)	142, 187, 356
EarI	CTCTTC	3 cut(s)	142, 187, 356
Eco130I	CCWWGG	2 cut(s)	726, 746
Eco32I	GATATC	1 cut(s)	907
Eco47I	GGWCC	1 cut(s)	731
Eco57I	CTGAAG	1 cut(s)	679
EcoRII	CCWGG	2 cut(s)	217, 809
EcoRV	GATATC	1 cut(s)	907
EcoT14I	CCWWGG	2 cut(s)	726, 746
ErhI	CCWWGG	2 cut(s)	726, 746
FaeI	CATG	5 cut(s)	467, 530, 722, 760, 808
FalI	AAGNNNNNCTT	4 cut(s)	249, 281, 774, 806
FaqI	GGGAC	1 cut(s)	744
FatI	CATG	5 cut(s)	463, 526, 718, 756, 804
Fnu4HI	GCNGC	2 cut(s)	184, 502
FokI	GGATG	1 cut(s)	827
Fsp4HI	GCNGC	2 cut(s)	184, 502
FspBI	CTAG	4 cut(s)	65, 609, 654, 846
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	2 cut(s)	184, 502
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	5 cut(s)	467, 530, 722, 760, 808
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HindIII	AAGCTT	2 cut(s)	126, 263
HinfI	GANTC	4 cut(s)	206, 545, 551, 590
HphI	GGTGA	2 cut(s)	126, 446
Hpy166II	GTNNAC	3 cut(s)	544, 563, 820
Hpy188I	TCNGA	5 cut(s)	289, 550, 556, 595, 840
Hpy188III	TCNNGA	5 cut(s)	339, 527, 681, 703, 757
Hpy8I	GTNNAC	3 cut(s)	544, 563, 820
Hpy99I	CGWCG	1 cut(s)	627
HpyAV	CCTTC	1 cut(s)	949
HpyCH4III	ACNGT	1 cut(s)	873
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	5 cut(s)	183, 467, 504, 895, 947
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	5 cut(s)	467, 530, 722, 760, 808
HspAI	GCGC	1 cut(s)	111
KpnI	GGTACC	1 cut(s)	311
Kzo9I	GATC	2 cut(s)	341, 825
LmnI	GCTCC	2 cut(s)	750, 787
Lsp1109I	GCAGC	2 cut(s)	195, 488
MaeI	CTAG	4 cut(s)	65, 609, 654, 846
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	5 cut(s)	515, 532, 656, 721, 911
MalI	GATC	2 cut(s)	343, 827
MboI	GATC	2 cut(s)	341, 825
MboII	GAAGA	9 cut(s)	159, 201, 204, 215, 242, 317, 373, 373, 376
MfeI	CAATTG	1 cut(s)	537
MflI	RGATCY	2 cut(s)	341, 825
MluCI	AATT	6 cut(s)	212, 404, 537, 579, 597, 614
MlyI	GAGTC	3 cut(s)	200, 539, 599
MmeI	TCCRAC	3 cut(s)	377, 394, 778
MseI	TTAA	1 cut(s)	267
MspR9I	CCNGG	2 cut(s)	219, 811
MunI	CAATTG	1 cut(s)	537
MvaI	CCWGG	2 cut(s)	219, 811
NdeII	GATC	2 cut(s)	341, 825
NheI	GCTAGC	1 cut(s)	608
NlaIII	CATG	5 cut(s)	467, 530, 722, 760, 808
NlaIV	GGNNCC	3 cut(s)	309, 732, 827
NmuCI	GTSAC	3 cut(s)	515, 721, 911
NspI	RCATGY	2 cut(s)	467, 808
PagI	TCATGA	2 cut(s)	526, 756
PciI	ACATGT	1 cut(s)	804
PfeI	GAWTC	1 cut(s)	551
PkrI	GCNGC	2 cut(s)	185, 503
PleI	GAGTC	3 cut(s)	200, 539, 598
PpsI	GAGTC	3 cut(s)	200, 539, 598
PscI	ACATGT	1 cut(s)	804
Psp6I	CCWGG	2 cut(s)	217, 809
PspGI	CCWGG	2 cut(s)	217, 809
PspN4I	GGNNCC	3 cut(s)	309, 732, 827
PspPI	GGNCC	1 cut(s)	731
PstI	CTGCAG	1 cut(s)	506
PsuI	RGATCY	2 cut(s)	341, 825
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	2 cut(s)	184, 502
Sau3AI	GATC	2 cut(s)	341, 825
Sau96I	GGNCC	1 cut(s)	731
SchI	GAGTC	3 cut(s)	200, 539, 599
ScrFI	CCNGG	2 cut(s)	219, 811
SfcI	CTRYAG	2 cut(s)	502, 869
SinI	GGWCC	1 cut(s)	731
Sse9I	AATT	6 cut(s)	212, 404, 537, 579, 597, 614
SsiI	CCGC	1 cut(s)	566
SspMI	CTAG	4 cut(s)	65, 609, 654, 846
StyD4I	CCNGG	2 cut(s)	217, 809
StyI	CCWWGG	2 cut(s)	726, 746
TaaI	ACNGT	1 cut(s)	873
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	3 cut(s)	474, 625, 962
TasI	AATT	6 cut(s)	212, 404, 537, 579, 597, 614
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	5 cut(s)	323, 580, 703, 862, 954
TseFI	GTSAC	3 cut(s)	515, 721, 911
TseI	GCWGC	2 cut(s)	183, 501
Tsp45I	GTSAC	3 cut(s)	515, 721, 911
TspDTI	ATGAA	6 cut(s)	70, 216, 440, 515, 745, 968
TspRI	CASTG	5 cut(s)	323, 580, 703, 862, 954
VpaK11BI	GGWCC	1 cut(s)	731
XapI	RAATTY	2 cut(s)	212, 404
XceI	RCATGY	2 cut(s)	467, 808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XspI	CTAG	4 cut(s)	65, 609, 654, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.