Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002871

Physical Location & Seq

Genomic Coordinates Forward (+)

60325841 .. 60328224

Gene Structure 2384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAATTACTGGCTTTATAGTAGCAAAGCTTCTTCCAACCCCAAAAGAAAAGCTGGCAAAGCCAACTCTCTGATGGGTTCTTGCAGCAGAAGAAGAGAGGATGAAGACTCTGAATTTCCAGGCTTCTACAAGTGTGTTGATTATTCTGTTCTTCTAAAGGGGAAGCTTAAAATCCCCAGAGACTTTTGCGAGAACTTTAAAGGAAAGATGCCTCAGCAGTGCCGTCTTCAGACTCTTTCTGGAACTTGGCATGTTGATGTGAAAAATATTAGCGGAGAGTTCTTCTTGAAAAAGGGCTGGAAGGAATTTGTTGTGGGAAATCGTTTGAAACTAGGAGAATGTGTAGTCTTTGATTACATTGGACATGCAAAGTTCTATGTTGAGATCTATGGACGCAATCACTGCAGCAAGAGTTCAAAGGCAATGAGAAGTGAGAGGCTTCTTGATGTTGACTCTGATGATCATAATGTTGTTTTTGTTGACTCGGATTCTGATTCTGATTCAGTTTCAGGCTTCTTGGAGTCTGAAACTGAGTGTCCTAGGAAATCAGGTTATGGAAAAAAATTGTCAAGGAGAGGTAGAGCTGGTAACTCAGCCACCATAAGATGTTTTGGTAACCCTTGCTTCAGTGTTAAGATGTGCCAAACTCATGTGACCAAGGGACCACTGCTCACACCAAGGAGCTTCATGAGGAACATACATAAGCCAAAGAAAGTCAAGCTTCAAGTTGGAGACATGGCCTGGGATGTGAACTGGATCCATCCTTACCAGCAATCTAGCAGGTTCAGTGGAGGTTGGCTACACTTTGCTAGCCAGAACAAGTTGCAAGAGGGAGATTTCTGTGACTTTGAGCTGATTTCAAAGACAATTGAGGTTGCAGTGATGAAGGTTTCTATTAGGAAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

302

Amino Acids

34.5

Weight (kDa)

9.4

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	49 - 132	8.6e-15	B3 DNA binding domain
B3	PF02362	215 - 290	8.5e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002871)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12870 FvH4_7g12880
rosa_chinensis	RchiOBHm_Chr1g0351951 RchiOBHm_Chr2g0089651 RchiOBHm_Chr2g0123231 RchiOBHm_Chr4g0439191
rosa_laevigata	RLG00000006289 RLG00000016048 RLG00000028372
rosa_multiflora	Rmu_sc0000665.1_g000025 Rmu_sc0002236.1_g000010 Rmu_sc0007728.1_g000009
rosa_roxburghii	Rroxscaffold_2G00151690 Rroxscaffold_4G00303430 Rroxscaffold_5G00380180
rosa_rugosa	Rorug01G0223100 Rorug02G0002200 Rorug02G0002300 Rorug02G0002400 Rorug04G0316500.1 Rorug04G0316600 Rorug04G0316700 Rorug04G0316800 Rorug04G0316800 Rorug04G0316900
rosa_samantha	Rh1AG237100 Rh1BG207300 Rh1CG221500 Rh1DG234300 Rh2AG047700 Rh2BG046300 Rh2CG048300 Rh2DG047700 Rh4AG367400 Rh4BG379000 Rh4CG393400 Rh4DG373600
rosa_wichuraiana	Rw1G020620 Rw2G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	771
AciI	CCGC	1 cut(s)	273
AclWI	GGATC	2 cut(s)	751, 764
AcsI	RAATTY	2 cut(s)	113, 305
AcuI	CTGAAG	2 cut(s)	212, 610
AgsI	TTSAA	5 cut(s)	289, 328, 417, 725, 861
AjnI	CCWGG	2 cut(s)	118, 740
AluBI	AGCT	7 cut(s)	29, 53, 166, 584, 684, 721, 853
AluI	AGCT	7 cut(s)	29, 53, 166, 584, 684, 721, 853
Alw26I	GTCTC	2 cut(s)	174, 726
AlwI	GGATC	2 cut(s)	751, 764
AoxI	GGCC	1 cut(s)	738
ApeKI	GCWGC	2 cut(s)	84, 405
ApoI	RAATTY	2 cut(s)	113, 305
AspA2I	CCTAGG	1 cut(s)	539
AspS9I	GGNCC	1 cut(s)	662
AsuNHI	GCTAGC	1 cut(s)	809
AvaII	GGWCC	1 cut(s)	662
AvrII	CCTAGG	1 cut(s)	539
BamHI	GGATCC	1 cut(s)	756
BarI	GAAGNNNNNNTAC	2 cut(s)	13, 45
BbsI	GAAGAC	2 cut(s)	111, 218
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	96, 417
BccI	CCATC	2 cut(s)	67, 768
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	2 cut(s)	120, 742
BclI	TGATCA	1 cut(s)	460
BcoDI	GTCTC	2 cut(s)	174, 726
BfaI	CTAG	4 cut(s)	332, 540, 777, 810
BfmI	CTRYAG	1 cut(s)	403
BfuAI	ACCTGC	1 cut(s)	771
BglII	AGATCT	1 cut(s)	384
BisI	GCNGC	2 cut(s)	85, 406
BlnI	CCTAGG	1 cut(s)	539
BlsI	GCNGC	2 cut(s)	86, 407
Bme1390I	CCNGG	2 cut(s)	120, 742
Bme18I	GGWCC	1 cut(s)	662
BmgT120I	GGNCC	1 cut(s)	662
BmiI	GGNNCC	2 cut(s)	663, 758
BmrFI	CCNGG	2 cut(s)	120, 742
BmsI	GCATC	1 cut(s)	198
BmtI	GCTAGC	1 cut(s)	813
BpiI	GAAGAC	2 cut(s)	111, 218
Bpu10I	CCTNAGC	1 cut(s)	213
BsaJI	CCNNGG	4 cut(s)	539, 657, 677, 741
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bse1I	ACTGG	2 cut(s)	14, 758
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	2 cut(s)	120, 742
BseDI	CCNNGG	4 cut(s)	539, 657, 677, 741
BseGI	GGATG	3 cut(s)	106, 751, 760
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	3 cut(s)	227, 522, 606
BseNI	ACTGG	2 cut(s)	14, 758
BseXI	GCAGC	2 cut(s)	96, 417
BshFI	GGCC	1 cut(s)	740
BslFI	GGGAC	1 cut(s)	675
BsmAI	GTCTC	2 cut(s)	174, 726
BsmFI	GGGAC	1 cut(s)	675
BsnI	GGCC	1 cut(s)	740
Bsp143I	GATC	3 cut(s)	384, 460, 756
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	1 cut(s)	740
BspCNI	CTCAG	3 cut(s)	226, 523, 605
BspHI	TCATGA	1 cut(s)	687
BspLI	GGNNCC	2 cut(s)	663, 758
BspMAI	CTGCAG	1 cut(s)	407
BspMI	ACCTGC	1 cut(s)	771
BspOI	GCTAGC	1 cut(s)	813
BspPI	GGATC	2 cut(s)	751, 764
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	2 cut(s)	14, 758
BssECI	CCNNGG	4 cut(s)	539, 657, 677, 741
BssMI	GATC	3 cut(s)	384, 460, 756
BssT1I	CCWWGG	3 cut(s)	539, 657, 677
Bst2UI	CCWGG	2 cut(s)	120, 742
Bst6I	CTCTTC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	402
BstC8I	GCNNGC	2 cut(s)	55, 811
BstDEI	CTNAG	3 cut(s)	213, 531, 592
BstEII	GGTNACC	1 cut(s)	614
BstF5I	GGATG	3 cut(s)	106, 751, 760
BstKTI	GATC	3 cut(s)	387, 463, 759
BstMAI	GTCTC	2 cut(s)	174, 726
BstMBI	GATC	3 cut(s)	384, 460, 756
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 402
BstNI	CCWGG	2 cut(s)	120, 742
BstNSI	RCATGY	2 cut(s)	254, 368
BstPI	GGTNACC	1 cut(s)	614
BstSCI	CCNGG	2 cut(s)	118, 740
BstSFI	CTRYAG	1 cut(s)	403
BstV1I	GCAGC	2 cut(s)	96, 417
BstV2I	GAAGAC	2 cut(s)	111, 218
BstX2I	RGATCY	2 cut(s)	384, 756
BstYI	RGATCY	2 cut(s)	384, 756
BsuRI	GGCC	1 cut(s)	740
BtsCI	GGATG	3 cut(s)	106, 751, 760
BtsI	GCAGTG	4 cut(s)	224, 400, 665, 885
BtsIMutI	CAGTG	6 cut(s)	224, 400, 634, 665, 793, 885
BveI	ACCTGC	1 cut(s)	771
Cac8I	GCNNGC	2 cut(s)	55, 811
CciI	TCATGA	1 cut(s)	687
Cfr13I	GGNCC	1 cut(s)	662
CseI	GACGC	1 cut(s)	402
CviAII	CATG	5 cut(s)	251, 365, 650, 688, 736
DdeI	CTNAG	3 cut(s)	213, 531, 592
DpnI	GATC	3 cut(s)	386, 462, 758
DpnII	GATC	3 cut(s)	384, 460, 756
DraI	TTTAAA	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco130I	CCWWGG	3 cut(s)	539, 657, 677
Eco47I	GGWCC	1 cut(s)	662
Eco57I	CTGAAG	2 cut(s)	212, 610
Eco91I	GGTNACC	1 cut(s)	614
EcoO65I	GGTNACC	1 cut(s)	614
EcoRII	CCWGG	2 cut(s)	118, 740
EcoT14I	CCWWGG	3 cut(s)	539, 657, 677
ErhI	CCWWGG	3 cut(s)	539, 657, 677
FaeI	CATG	5 cut(s)	254, 368, 653, 691, 739
FalI	AAGNNNNNCTT	2 cut(s)	705, 737
FaqI	GGGAC	1 cut(s)	675
FatI	CATG	5 cut(s)	250, 364, 649, 687, 735
FbaI	TGATCA	1 cut(s)	460
Fnu4HI	GCNGC	2 cut(s)	85, 406
FokI	GGATG	3 cut(s)	113, 747, 758
Fsp4HI	GCNGC	2 cut(s)	85, 406
FspBI	CTAG	4 cut(s)	332, 540, 777, 810
GluI	GCNGC	2 cut(s)	85, 406
HaeIII	GGCC	1 cut(s)	740
HgaI	GACGC	1 cut(s)	402
Hin1II	CATG	5 cut(s)	254, 368, 653, 691, 739
HincII	GTYRAC	2 cut(s)	451, 481
HindII	GTYRAC	2 cut(s)	451, 481
HindIII	AAGCTT	3 cut(s)	27, 164, 719
HinfI	GANTC	8 cut(s)	107, 232, 452, 482, 488, 494, 500, 521
Hpy166II	GTNNAC	3 cut(s)	451, 481, 751
Hpy188I	TCNGA	8 cut(s)	72, 112, 231, 457, 487, 493, 499, 526
Hpy188III	TCNNGA	4 cut(s)	240, 286, 443, 688
Hpy8I	GTNNAC	3 cut(s)	451, 481, 751
HpyAV	CCTTC	2 cut(s)	295, 880
HpyCH4V	TGCA	5 cut(s)	84, 368, 405, 826, 878
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 402
HpyF3I	CTNAG	3 cut(s)	213, 531, 592
Hsp92II	CATG	5 cut(s)	254, 368, 653, 691, 739
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	3 cut(s)	384, 460, 756
LmnI	GCTCC	1 cut(s)	681
Lsp1109I	GCAGC	2 cut(s)	96, 417
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	4 cut(s)	332, 540, 777, 810
MaeIII	GTNAC	4 cut(s)	587, 614, 652, 842
MalI	GATC	3 cut(s)	386, 462, 758
MboI	GATC	3 cut(s)	384, 460, 756
MboII	GAAGA	7 cut(s)	24, 102, 105, 116, 143, 218, 274
MfeI	CAATTG	1 cut(s)	867
MflI	RGATCY	2 cut(s)	384, 756
MluCI	AATT	5 cut(s)	4, 113, 305, 563, 867
MlyI	GAGTC	5 cut(s)	101, 226, 446, 476, 530
MmeI	TCCRAC	2 cut(s)	60, 709
MnlI	CCTC	8 cut(s)	91, 222, 429, 569, 684, 785, 823, 865
MseI	TTAA	3 cut(s)	168, 198, 633
MslI	CAYNNNNRTG	1 cut(s)	255
MspR9I	CCNGG	2 cut(s)	120, 742
MunI	CAATTG	1 cut(s)	867
MvaI	CCWGG	2 cut(s)	120, 742
MwoI	GCNNNNNNNGC	2 cut(s)	59, 402
NdeII	GATC	3 cut(s)	384, 460, 756
NheI	GCTAGC	1 cut(s)	809
NlaIII	CATG	5 cut(s)	254, 368, 653, 691, 739
NlaIV	GGNNCC	2 cut(s)	663, 758
NmuCI	GTSAC	2 cut(s)	652, 842
NspI	RCATGY	2 cut(s)	254, 368
PagI	TCATGA	1 cut(s)	687
PfeI	GAWTC	3 cut(s)	488, 494, 500
PkrI	GCNGC	2 cut(s)	86, 407
PleI	GAGTC	5 cut(s)	101, 226, 446, 476, 529
PpsI	GAGTC	5 cut(s)	101, 226, 446, 476, 529
Psp6I	CCWGG	2 cut(s)	118, 740
PspEI	GGTNACC	1 cut(s)	614
PspGI	CCWGG	2 cut(s)	118, 740
PspN4I	GGNNCC	2 cut(s)	663, 758
PspPI	GGNCC	1 cut(s)	662
PstI	CTGCAG	1 cut(s)	407
PsuI	RGATCY	2 cut(s)	384, 756
RseI	CAYNNNNRTG	1 cut(s)	255
SaqAI	TTAA	3 cut(s)	168, 198, 633
SatI	GCNGC	2 cut(s)	85, 406
Sau3AI	GATC	3 cut(s)	384, 460, 756
Sau96I	GGNCC	1 cut(s)	662
SchI	GAGTC	5 cut(s)	101, 226, 446, 476, 530
ScrFI	CCNGG	2 cut(s)	120, 742
SfaNI	GCATC	1 cut(s)	198
SfcI	CTRYAG	1 cut(s)	403
SinI	GGWCC	1 cut(s)	662
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	5 cut(s)	4, 113, 305, 563, 867
SsiI	CCGC	1 cut(s)	273
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	4 cut(s)	332, 540, 777, 810
StyD4I	CCNGG	2 cut(s)	118, 740
StyI	CCWWGG	3 cut(s)	539, 657, 677
TasI	AATT	5 cut(s)	4, 113, 305, 563, 867
TfiI	GAWTC	3 cut(s)	488, 494, 500
Tru1I	TTAA	3 cut(s)	168, 198, 633
Tru9I	TTAA	3 cut(s)	168, 198, 633
TscAI	CASTG	6 cut(s)	224, 407, 634, 672, 793, 885
TseFI	GTSAC	2 cut(s)	652, 842
TseI	GCWGC	2 cut(s)	84, 405
Tsp45I	GTSAC	2 cut(s)	652, 842
TspDTI	ATGAA	4 cut(s)	17, 117, 676, 899
TspRI	CASTG	6 cut(s)	224, 407, 634, 672, 793, 885
VpaK11BI	GGWCC	1 cut(s)	662
XapI	RAATTY	2 cut(s)	113, 305
XceI	RCATGY	2 cut(s)	254, 368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XmaJI	CCTAGG	1 cut(s)	539
XspI	CTAG	4 cut(s)	332, 540, 777, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.