Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002871

Physical Location & Seq

Genomic Coordinates Reverse (-)

6033763 .. 6035698

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006289

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGGTTCTTCCAGCAGAAGAAGAGAGGATGAAGACTCTGAATTTCCAGGCTTCTACAAGTGTGTTGATTATTCTGTTCTCCTAAAGGGGAAGCTTAAATCTGCACTCACTTTGTTGTATGCAGGGAAATCAGGTTATGGAAAAAAATTGTCAAGGAGAGGTAGAGCTGGTAACTCAGCCACCATAAGAAGCTCTGGTAATCCTTGCTTCAGTGTTAAGATGTGCCAAACTCATGTGACCAAGGGACCACTGCTCACACCAAGGAGTTTCATGAGGAACATACATAAGCCAAAGAAAGTCAAGCTTCAAGTTGGAGACATGGCCTGGGATGTGAACTGGATTCATCCTTACCAGCAATCTAGTAGGTTCAGTGGAGGTTGGGTACACTTTGCTAGCCAGAACAGGTTGCAAGAGGGAGATTTCTGTGACTTTGAGCTGATTTCAAAGACAATTGAGGTTGCAGTGATGAAGGTTTCTATTAGGAAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

164

Amino Acids

18.43

Weight (kDa)

9.98

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	76 - 151	1.8e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002871)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12870 FvH4_7g12880
rosa_chinensis	RchiOBHm_Chr1g0351951 RchiOBHm_Chr2g0089651 RchiOBHm_Chr2g0123231 RchiOBHm_Chr4g0439191
rosa_laevigata	RLG00000006289 RLG00000016048 RLG00000028372
rosa_multiflora	Rmu_sc0000665.1_g000025 Rmu_sc0002236.1_g000010 Rmu_sc0007728.1_g000009
rosa_roxburghii	Rroxscaffold_2G00151690 Rroxscaffold_4G00303430 Rroxscaffold_5G00380180
rosa_rugosa	Rorug01G0223100 Rorug02G0002200 Rorug02G0002300 Rorug02G0002400 Rorug04G0316500.1 Rorug04G0316600 Rorug04G0316700 Rorug04G0316800 Rorug04G0316800 Rorug04G0316900
rosa_samantha	Rh1AG237100 Rh1BG207300 Rh1CG221500 Rh1DG234300 Rh2AG047700 Rh2BG046300 Rh2CG048300 Rh2DG047700 Rh4AG367400 Rh4BG379000 Rh4CG393400 Rh4DG373600
rosa_wichuraiana	Rw1G020620 Rw2G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	193
AfaI	GTAC	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	308, 444
AjnI	CCWGG	2 cut(s)	46, 323
AluBI	AGCT	5 cut(s)	94, 167, 192, 304, 436
AluI	AGCT	5 cut(s)	94, 167, 192, 304, 436
Alw26I	GTCTC	1 cut(s)	309
AoxI	GGCC	1 cut(s)	321
ApoI	RAATTY	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	245
AsuNHI	GCTAGC	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	39
BciT130I	CCWGG	2 cut(s)	48, 325
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	2 cut(s)	360, 393
Bme1390I	CCNGG	2 cut(s)	48, 325
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	2 cut(s)	48, 325
BmtI	GCTAGC	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	240, 260, 324
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bse1I	ACTGG	1 cut(s)	341
BseBI	CCWGG	2 cut(s)	48, 325
BseDI	CCNNGG	3 cut(s)	240, 260, 324
BseGI	GGATG	3 cut(s)	34, 334, 343
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	341
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	258
BsmAI	GTCTC	1 cut(s)	309
BsmFI	GGGAC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	188
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	246
BspOI	GCTAGC	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	3 cut(s)	240, 260, 324
BssT1I	CCWWGG	2 cut(s)	240, 260
Bst2UI	CCWGG	2 cut(s)	48, 325
Bst6I	CTCTTC	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	394
BstDEI	CTNAG	1 cut(s)	175
BstF5I	GGATG	3 cut(s)	34, 334, 343
BstMAI	GTCTC	1 cut(s)	309
BstNI	CCWGG	2 cut(s)	48, 325
BstSCI	CCNGG	2 cut(s)	46, 323
BstV2I	GAAGAC	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	323
BtsCI	GGATG	3 cut(s)	34, 334, 343
BtsI	GCAGTG	2 cut(s)	248, 468
BtsIMutI	CAGTG	4 cut(s)	217, 248, 376, 468
Cac8I	GCNNGC	1 cut(s)	394
CciI	TCATGA	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	383
CviAII	CATG	3 cut(s)	233, 271, 319
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco130I	CCWWGG	2 cut(s)	240, 260
Eco47I	GGWCC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	46, 323
EcoT14I	CCWWGG	2 cut(s)	240, 260
ErhI	CCWWGG	2 cut(s)	240, 260
FaeI	CATG	3 cut(s)	236, 274, 322
FaiI	YATR	8 cut(s)	120, 138, 185, 234, 272, 281, 285, 320
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	3 cut(s)	232, 270, 318
FokI	GGATG	3 cut(s)	41, 330, 341
FspBI	CTAG	2 cut(s)	360, 393
HaeIII	GGCC	1 cut(s)	323
Hin1II	CATG	3 cut(s)	236, 274, 322
HindIII	AAGCTT	2 cut(s)	92, 302
HinfI	GANTC	2 cut(s)	35, 340
Hpy166II	GTNNAC	2 cut(s)	334, 385
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	2 cut(s)	334, 385
HpyAV	CCTTC	1 cut(s)	463
HpyCH4V	TGCA	4 cut(s)	104, 122, 409, 461
HpyF3I	CTNAG	1 cut(s)	175
Hsp92II	CATG	3 cut(s)	236, 274, 322
MaeI	CTAG	2 cut(s)	360, 393
MaeIII	GTNAC	3 cut(s)	170, 235, 425
MboII	GAAGA	3 cut(s)	30, 33, 44
MfeI	CAATTG	1 cut(s)	450
MluCI	AATT	3 cut(s)	41, 146, 450
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	6 cut(s)	19, 152, 267, 368, 406, 448
MseI	TTAA	2 cut(s)	96, 216
MspR9I	CCNGG	2 cut(s)	48, 325
MunI	CAATTG	1 cut(s)	450
MvaI	CCWGG	2 cut(s)	48, 325
NheI	GCTAGC	1 cut(s)	392
NlaIII	CATG	3 cut(s)	236, 274, 322
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	2 cut(s)	235, 425
PagI	TCATGA	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	340
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	46, 323
PspGI	CCWGG	2 cut(s)	46, 323
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	1 cut(s)	245
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
SaqAI	TTAA	2 cut(s)	96, 216
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	48, 325
SinI	GGWCC	1 cut(s)	245
Sse9I	AATT	3 cut(s)	41, 146, 450
SspMI	CTAG	2 cut(s)	360, 393
StyD4I	CCNGG	2 cut(s)	46, 323
StyI	CCWWGG	2 cut(s)	240, 260
TasI	AATT	3 cut(s)	41, 146, 450
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	2 cut(s)	96, 216
Tru9I	TTAA	2 cut(s)	96, 216
TscAI	CASTG	4 cut(s)	217, 255, 376, 468
TseFI	GTSAC	2 cut(s)	235, 425
Tsp45I	GTSAC	2 cut(s)	235, 425
TspDTI	ATGAA	4 cut(s)	45, 259, 332, 482
TspRI	CASTG	4 cut(s)	217, 255, 376, 468
VpaK11BI	GGWCC	1 cut(s)	245
XapI	RAATTY	1 cut(s)	41
XspI	CTAG	2 cut(s)	360, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.