Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002871

Physical Location & Seq

Genomic Coordinates Forward (+)

44676942 .. 44678818

Gene Structure 1877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG237100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAGCACAGCTTATTCACCCCCAAAGAGAAGAGGTAGCCAAGCCAACTCTGTGATGGGTTCTTGCAGCCGAAGAAGAGAGGATGCAGACTCTGAATTTCCAGGCTTCTACAAGTGTGTTGATTACTCTGTTCTTCAAAAAGGGAAGCTTAAAATCCCCCAAGAGTTTTGTGAGAAGTTTGAAGTAAAGGTACCTCATCAGTGCCAACTTCAAACTTTTTCTGGATCTTGGCGTGTTGATTTGAAGAGGATTAGTGGAGAGTTCTTCTTCAAAAAGGGTTGGAGGGAATTTGTAGTTGGAAATCGTTTGAACCTTGGTGAATATGTTGTCTTTCATTACTTTGGACATGCAAAGTTCGATGTTGAGATATATGGACACAATCGCTGCAGCAAGAAAAGTGACAGGCTTCATGATGTTACAACTGTTGACTCTGATTCTGATTGTGAACAGCAAAACACTGAAATTAGCTTGGAGTCTGAAATTGAGTGTGCTAGGAAATTGGGTCGTCGAACACATTTTTCAAGGAGAGCTGGAGCTCGTAACCTAGCCACCATAAGCCGTTCTGGAAATCCTTGCTTCAGTGTCCAGATGTGCCAAACTCATGTGACCAAGGGACCATTGCTCACACCAAGGAGCTTCATGAGGAACATCTACAAGCCAAAGAAAGTCGAGCTTCAAGTTGGAAACATGTCCTGGGATGTGAACTGGATCCATCTTTACCAGAGATCTAGTAGGTTCAGTGGAGGTTGGCTACAGTTTGTGAAACAGAATGGGTTGCAAGAGGGAGATATCTGTGAGTTTGAGCTGATTTCAAAGACATTTGAGGTTGCAGTGATGAAGGTTTCGATTAGGAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

286

Amino Acids

33.04

Weight (kDa)

9.39

Isoelectric Point (pI)

53.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	42 - 123	7.6e-13	B3 DNA binding domain
B3	PF02362	195 - 279	1.1e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002871)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12870 FvH4_7g12880
rosa_chinensis	RchiOBHm_Chr1g0351951 RchiOBHm_Chr2g0089651 RchiOBHm_Chr2g0123231 RchiOBHm_Chr4g0439191
rosa_laevigata	RLG00000006289 RLG00000016048 RLG00000028372
rosa_multiflora	Rmu_sc0000665.1_g000025 Rmu_sc0002236.1_g000010 Rmu_sc0007728.1_g000009
rosa_roxburghii	Rroxscaffold_2G00151690 Rroxscaffold_4G00303430 Rroxscaffold_5G00380180
rosa_rugosa	Rorug01G0223100 Rorug02G0002200 Rorug02G0002300 Rorug02G0002400 Rorug04G0316500.1 Rorug04G0316600 Rorug04G0316700 Rorug04G0316800 Rorug04G0316800 Rorug04G0316900
rosa_samantha	Rh1AG237100 Rh1BG207300 Rh1CG221500 Rh1DG234300 Rh2AG047700 Rh2BG046300 Rh2CG048300 Rh2DG047700 Rh4AG367400 Rh4BG379000 Rh4CG393400 Rh4DG373600
rosa_wichuraiana	Rw1G020620 Rw2G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	190
AccB1I	GGYRCC	1 cut(s)	190
AclWI	GGATC	3 cut(s)	232, 703, 716
AcsI	RAATTY	2 cut(s)	95, 287
AcuI	CTGAAG	1 cut(s)	562
AfaI	GTAC	1 cut(s)	192
AflIII	ACRYGT	1 cut(s)	687
AgsI	TTSAA	9 cut(s)	137, 182, 212, 244, 271, 310, 522, 677, 813
AjnI	CCWGG	2 cut(s)	100, 692
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	8 cut(s)	11, 148, 468, 530, 536, 636, 673, 805
AluI	AGCT	8 cut(s)	11, 148, 468, 530, 536, 636, 673, 805
Alw21I	GWGCWC	2 cut(s)	8, 538
AlwI	GGATC	3 cut(s)	232, 703, 716
AlwNI	CAGNNNCTG	1 cut(s)	92
ApeKI	GCWGC	3 cut(s)	66, 384, 387
ApoI	RAATTY	2 cut(s)	95, 287
Asp718I	GGTACC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	614
AsuHPI	GGTGA	2 cut(s)	9, 329
AvaII	GGWCC	1 cut(s)	614
BamHI	GGATCC	1 cut(s)	708
BanI	GGYRCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	538
BarI	GAAGNNNNNNTAC	2 cut(s)	174, 206
Bbv12I	GWGCWC	2 cut(s)	8, 538
BbvI	GCAGC	3 cut(s)	78, 371, 399
BccI	CCATC	2 cut(s)	49, 720
BceAI	ACGGC	1 cut(s)	543
BciT130I	CCWGG	2 cut(s)	102, 694
BfaI	CTAG	3 cut(s)	492, 545, 729
BfmI	CTRYAG	2 cut(s)	385, 752
BglII	AGATCT	1 cut(s)	725
BisI	GCNGC	3 cut(s)	67, 385, 388
BlsI	GCNGC	3 cut(s)	68, 386, 389
Bme1390I	CCNGG	2 cut(s)	102, 694
Bme18I	GGWCC	1 cut(s)	614
BmgT120I	GGNCC	1 cut(s)	614
BmiI	GGNNCC	3 cut(s)	192, 615, 710
BmrFI	CCNGG	2 cut(s)	102, 694
BmsI	GCATC	1 cut(s)	73
BpmI	CTGGAG	1 cut(s)	552
BsaJI	CCNNGG	4 cut(s)	313, 609, 629, 693
Bse1I	ACTGG	1 cut(s)	710
Bse3DI	GCAATG	1 cut(s)	617
BseBI	CCWGG	2 cut(s)	102, 694
BseDI	CCNNGG	4 cut(s)	313, 609, 629, 693
BseGI	GGATG	2 cut(s)	88, 703
BseMI	GCAATG	1 cut(s)	617
BseNI	ACTGG	1 cut(s)	710
BseXI	GCAGC	3 cut(s)	78, 371, 399
BshNI	GGYRCC	1 cut(s)	190
BsiHKAI	GWGCWC	2 cut(s)	8, 538
BslFI	GGGAC	1 cut(s)	627
BsmFI	GGGAC	1 cut(s)	627
Bsp1286I	GDGCHC	2 cut(s)	8, 538
Bsp143I	GATC	3 cut(s)	224, 708, 725
BspHI	TCATGA	2 cut(s)	409, 639
BspLI	GGNNCC	3 cut(s)	192, 615, 710
BspMAI	CTGCAG	1 cut(s)	389
BspPI	GGATC	3 cut(s)	232, 703, 716
BspT107I	GGYRCC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	617
BsrI	ACTGG	1 cut(s)	710
BssECI	CCNNGG	4 cut(s)	313, 609, 629, 693
BssMI	GATC	3 cut(s)	224, 708, 725
BssT1I	CCWWGG	3 cut(s)	313, 609, 629
Bst2UI	CCWGG	2 cut(s)	102, 694
Bst4CI	ACNGT	2 cut(s)	424, 756
Bst6I	CTCTTC	3 cut(s)	25, 70, 239
BstF5I	GGATG	2 cut(s)	88, 703
BstKTI	GATC	3 cut(s)	227, 711, 728
BstMBI	GATC	3 cut(s)	224, 708, 725
BstNI	CCWGG	2 cut(s)	102, 694
BstNSI	RCATGY	2 cut(s)	350, 691
BstSCI	CCNGG	2 cut(s)	100, 692
BstSFI	CTRYAG	2 cut(s)	385, 752
BstV1I	GCAGC	3 cut(s)	78, 371, 399
BstX2I	RGATCY	3 cut(s)	224, 708, 725
BstYI	RGATCY	3 cut(s)	224, 708, 725
BtsCI	GGATG	2 cut(s)	88, 703
BtsI	GCAGTG	1 cut(s)	837
BtsIMutI	CAGTG	5 cut(s)	206, 456, 586, 745, 837
CaiI	CAGNNNCTG	1 cut(s)	92
CciI	TCATGA	2 cut(s)	409, 639
Cfr13I	GGNCC	1 cut(s)	614
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	5 cut(s)	347, 410, 602, 640, 688
CviQI	GTAC	1 cut(s)	191
DpnI	GATC	3 cut(s)	226, 710, 727
DpnII	GATC	3 cut(s)	224, 708, 725
Eam1104I	CTCTTC	3 cut(s)	25, 70, 239
EarI	CTCTTC	3 cut(s)	25, 70, 239
Ecl136II	GAGCTC	1 cut(s)	536
Eco130I	CCWWGG	3 cut(s)	313, 609, 629
Eco24I	GRGCYC	1 cut(s)	538
Eco32I	GATATC	1 cut(s)	790
Eco47I	GGWCC	1 cut(s)	614
Eco53kI	GAGCTC	1 cut(s)	536
Eco57I	CTGAAG	1 cut(s)	562
EcoICRI	GAGCTC	1 cut(s)	536
EcoRII	CCWGG	2 cut(s)	100, 692
EcoRV	GATATC	1 cut(s)	790
EcoT14I	CCWWGG	3 cut(s)	313, 609, 629
EcoT38I	GRGCYC	1 cut(s)	538
ErhI	CCWWGG	3 cut(s)	313, 609, 629
FaeI	CATG	5 cut(s)	350, 413, 605, 643, 691
FaiI	YATR	9 cut(s)	324, 348, 370, 372, 411, 554, 603, 641, 689
FalI	AAGNNNNNCTT	4 cut(s)	132, 164, 657, 689
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	5 cut(s)	346, 409, 601, 639, 687
Fnu4HI	GCNGC	3 cut(s)	67, 385, 388
FokI	GGATG	2 cut(s)	95, 710
FriOI	GRGCYC	1 cut(s)	538
Fsp4HI	GCNGC	3 cut(s)	67, 385, 388
FspBI	CTAG	3 cut(s)	492, 545, 729
GluI	GCNGC	3 cut(s)	67, 385, 388
GsuI	CTGGAG	1 cut(s)	552
Hin1II	CATG	5 cut(s)	350, 413, 605, 643, 691
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	4 cut(s)	89, 428, 434, 473
HphI	GGTGA	2 cut(s)	9, 329
Hpy166II	GTNNAC	3 cut(s)	427, 446, 703
Hpy188I	TCNGA	4 cut(s)	94, 433, 439, 478
Hpy188III	TCNNGA	5 cut(s)	222, 410, 564, 586, 640
Hpy8I	GTNNAC	3 cut(s)	427, 446, 703
Hpy99I	CGWCG	1 cut(s)	510
HpyAV	CCTTC	1 cut(s)	832
HpyCH4III	ACNGT	2 cut(s)	424, 756
HpyCH4V	TGCA	6 cut(s)	66, 86, 350, 387, 778, 830
Hsp92II	CATG	5 cut(s)	350, 413, 605, 643, 691
KpnI	GGTACC	1 cut(s)	194
Kzo9I	GATC	3 cut(s)	224, 708, 725
LmnI	GCTCC	2 cut(s)	533, 633
Lsp1109I	GCAGC	3 cut(s)	78, 371, 399
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	3 cut(s)	492, 545, 729
MaeIII	GTNAC	4 cut(s)	398, 415, 539, 604
MalI	GATC	3 cut(s)	226, 710, 727
MboI	GATC	3 cut(s)	224, 708, 725
MboII	GAAGA	7 cut(s)	42, 84, 87, 125, 256, 256, 259
MflI	RGATCY	3 cut(s)	224, 708, 725
MhlI	GDGCHC	2 cut(s)	8, 538
MluCI	AATT	5 cut(s)	95, 287, 462, 480, 497
MlyI	GAGTC	3 cut(s)	83, 422, 482
MmeI	TCCRAC	3 cut(s)	260, 277, 661
MnlI	CCTC	9 cut(s)	26, 73, 204, 240, 276, 636, 737, 775, 817
MseI	TTAA	1 cut(s)	150
MspR9I	CCNGG	2 cut(s)	102, 694
MvaI	CCWGG	2 cut(s)	102, 694
NdeII	GATC	3 cut(s)	224, 708, 725
NlaIII	CATG	5 cut(s)	350, 413, 605, 643, 691
NlaIV	GGNNCC	3 cut(s)	192, 615, 710
NmuCI	GTSAC	2 cut(s)	398, 604
NspI	RCATGY	2 cut(s)	350, 691
PagI	TCATGA	2 cut(s)	409, 639
PciI	ACATGT	1 cut(s)	687
PfeI	GAWTC	1 cut(s)	434
PkrI	GCNGC	3 cut(s)	68, 386, 389
PleI	GAGTC	3 cut(s)	83, 422, 481
PpsI	GAGTC	3 cut(s)	83, 422, 481
PscI	ACATGT	1 cut(s)	687
Psp124BI	GAGCTC	1 cut(s)	538
Psp6I	CCWGG	2 cut(s)	100, 692
PspGI	CCWGG	2 cut(s)	100, 692
PspN4I	GGNNCC	3 cut(s)	192, 615, 710
PspPI	GGNCC	1 cut(s)	614
PstI	CTGCAG	1 cut(s)	389
PstNI	CAGNNNCTG	1 cut(s)	92
PsuI	RGATCY	3 cut(s)	224, 708, 725
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SacI	GAGCTC	1 cut(s)	538
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	3 cut(s)	67, 385, 388
Sau3AI	GATC	3 cut(s)	224, 708, 725
Sau96I	GGNCC	1 cut(s)	614
SchI	GAGTC	3 cut(s)	83, 422, 482
ScrFI	CCNGG	2 cut(s)	102, 694
SduI	GDGCHC	2 cut(s)	8, 538
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	2 cut(s)	385, 752
SinI	GGWCC	1 cut(s)	614
Sse9I	AATT	5 cut(s)	95, 287, 462, 480, 497
SspMI	CTAG	3 cut(s)	492, 545, 729
SstI	GAGCTC	1 cut(s)	538
StyD4I	CCNGG	2 cut(s)	100, 692
StyI	CCWWGG	3 cut(s)	313, 609, 629
TaaI	ACNGT	2 cut(s)	424, 756
TaqI	TCGA	4 cut(s)	357, 508, 669, 845
TasI	AATT	5 cut(s)	95, 287, 462, 480, 497
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	5 cut(s)	206, 463, 586, 745, 837
TseFI	GTSAC	2 cut(s)	398, 604
TseI	GCWGC	3 cut(s)	66, 384, 387
Tsp45I	GTSAC	2 cut(s)	398, 604
TspDTI	ATGAA	4 cut(s)	323, 398, 628, 851
TspRI	CASTG	5 cut(s)	206, 463, 586, 745, 837
VpaK11BI	GGWCC	1 cut(s)	614
XapI	RAATTY	2 cut(s)	95, 287
XceI	RCATGY	2 cut(s)	350, 691
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XspI	CTAG	3 cut(s)	492, 545, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.